Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0064700.5

Overview

Field Value
Gene ID LotjaGi4g1v0064700
Transcript ID LotjaGi4g1v0064700.5
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT5G45970.1 RAC-like 2; Swiss-Prot: sp|Q41254|RAC9_GOSHI Rac-like GTP-binding protein RAC9; TrEMBL-Plants: tr|A0A0B2RGP4|A0A0B2RGP4_GLYSO Rac-like GTP-binding protein 7; Found in the gene: LotjaGi4g1v0064700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8092473..8098964) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGTATGTTCCAATTAGCATACTTATTGGTCATGGAAGGTTCAATTGTACATATATATACAGG GTTTAAAATTGTGGTTGCCATTGCCACTGTGTCGCAGAATTGCAGACAAGTGGAGGGTGATGCGGTTGCAATTCCGGTCT CTAGAACCGTTACGTTGCGGCTGCAATCGCAGTTGCGGACGAAAATTTGAAACCCTGCATATATCTATGAACTGGAATCA TGGTTTCAGGAGCTAGTTTTGAAGCTAATGCTCTTTCTTTTGCTATGGTTTTCTCTTTGTTAGGATTATGTTCCAACAGT GTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAGTTAATCTTGGTCTATGGGACACTGCAGGTTTGTTAA TCTTCTTTCTGAGGGCTATGTTTCACATTCACTTTAAATGCCAAATTTTGATGAATGAAAATATTGTGTTTGCTTTGTAT AATTTGTGTGGTTACAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTGTTTTTGCTGT GCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGGTTTTTTAACTATCTGCCCCAAATCCTCTTGTT CAGTTACTGTAATTTGGTTTTCAGTTGAATTGTGATGTGAAATCCTTAAAACATATGTATTTGTTGGATTCTTGACAAAC AGTGGATACCTGAGCTGAGACATTATGCTCCAAATGTGCCTATTGTGCTGGTGGGAACAAAACTAGGTATGATAATTCCA TCAAAGTAGCATAGCAAAATTCATCATAATTTGTCAGTAATGATAGTCTTCTTCATATTCCTCTCTCTCTCTCTAGCTAT TCAACTCTACTTCTGTACAATTGTGAAACTTCCATAATTAAACATTAACTAGAGATCTAGCTAAATAAGTCCTTATAAAG GGGAGGGAAACCAGGGCAACGCTCACCAAAGTTTAAAACTGTGGTCGCGGTTGTGGTTGTAGTTAAATTGCGGGATTACA GACAAATGCGGGTGAATGCGGCTGCAATTGCAGTCACGATTGTGGGTGTCAAGAATAATTGGCTTGATGCCTTCTCTGAT TCTATTCTCTTCTATATATAATACAATTACATTTACAAGCAATAATGACTAATTAACCCTAATTCCTAATTTGCACAACC TAAATTAGGAAGTCTAATTCTGTACATTCAAATAGGAATATTCTTGATTCTATTTCCTAATTTCTCAAACATAAAATAGG AAACAATCATTAATTGCAGATATCCTCATTGACATCCCCCCTCAAATTGATGCGGTTTGTCAAGAAGCATCAATTTGCTA AGAAGAAACTGGTGACGGGCACGAGGAACCGCTTTAGTGAAGATATCTGCAAGCTGAAGCTGCGAGGAGACATGAGGAAG AGAGATAACATGATCATCAAGAGCCTCACGAATGGAGTGACAATCCACTTCAATATGCTTAGTGCGCTCATGAAAAACTG GATTAGTAGCAATCTGAATAGCGCTTGTGTTGTCAGCATGGAGAGGCGTAACATTGATTTGAGGGAATCCGAGTTCAGCC AATAAACCACGAAGCCAAGTTATTTCAGAGCAAGCAGTGGACATAGCTCGATATTCAGACTCAGTGGATGACTTGGAAAC GCGGGCTTGCTTTTTGCTCTTCCAAGAAATTAAGGCCGGACCAAGGAACATGCACCAACCGGACACCGACCTTCGTGTAT CAGCACAACCTGCCCAATCAGCATCACTATAGGCAAGCAAAGTAAGAGATGTACTGGCCGGAAAAAATAATCCTCGATAA GACGTTCCTTTCAAATAGCGAATGATGCGACGAACAGCAGCCAAGTGAAGATGACGAGGAGTGTGCATGAATTGACTAAC TTGTTGCACTGCAAAGGAAATATCTGGACGTGTAATAGTCAAATAGTTAAGACTTCCCACCAATTGACGATACAATAAAG GATCAGGCAAAAGATCACCCTCATCACGATGATATTTGACATTAACTTCAAGAGGAGTATCCACAGGGACAACAGATTGA AGACCAGCCAAAGAAACTAAGTCCTCAGTATACTTGTGCTGATTGAGAAAAATACCTTTGGAGTCAGAATGAACCTCAAG CCCCAAGAAATAGTGAAGATACCCAAGATCCTTCATGTGAAAGGAAGCTTGAAGCTGCTGTTTAAGTAGTTGTATGGACG CTTGATCAGAGCCAGTAATGATCATGTCATCAACATAAATGAGAAGAAGAACAATACCAGCGGACGTGTGATGAATGAAT AAGGAGGAATCATATTGGCTCTGAGAAAAAGAGAATCCAAGAAGGGTAGACCGAAATTTCTCAAACCATGCCCGAGGAGC CTGCCGCAAGCCATATAAAGAACGCTTGACTTTGCACACGCCTTCAGAGGAAGAAAACAAGCCTGGAGGAGGTTTCATAA AAATATCTTCTGCTAAATCACCATGAAGAAATGCATTCTTCACATCCATTTGATATAGGGACCAACCTTTAGAGGCAGCA ATAGAAAGGATTGTGCGGACAGTGGTCATCTTTGCCACAGGTGCAAAGGTCTCATCATAATCCACCCCGTATTCTTGTTT GTTACCCAAAGCAACCAACCGGGCCTTATAACGATTGAGAGAACCATCAGAATTTAACTTCACAGAGTACACCCATTTGC AACCAATGGGTTTAACACCAAGAGGGCAAGGGACTATGTCCCAAGTGAAATTCTCCTGAAGTGCTTGTAGCTCATCTTGC ATGGCCTTTACCCAACGCATGTCCTTAACAGCCTGCGAATAACATGTGGGAATAGGTATACTAGATAAAGTAGCAGTAAG AGAAGTAGGCTCCCATCCATACCTATTAGGTGTTCGATGCAGGCGAGTGGATCGACGCAGGGTAACTGGTGCTGGTTCAG GCGGAGGATCAGCATCGGGAGGGGGCAAAGTAGGAGGTCGTCTAGTATACACCTGTCCAGGTTTAAAACGTTCTATAGGA CGAGGAACATCAGCAAAGGTATGAAGAGGAACAAAACTGTTAGAATCAGAAGGAAAACATGGAAAATAATATTGATAATC AAAGAAAACCACATTTCTAGAAATGCGCATGCGTTGAGCAATGACATCATAACACAAAAATCCCTTTTGATTAGGAGAAT AACCCATAAAGGCACACTGCACAGATTGCGCGCCGAGTTTATGACGCTCTAGAGGTGGCAAGTGCACAAAGCAGACACAC CCAAACGTGTGAAGGTCATCATAACTTGGCTGTGTGTTATAGAGACGAAAGAAAGGAGAATCAAAAGCCAAAACCTGAGA TGGGAGGCGGTTGATCAAGTATACAGCCGCAGACAAAGCTTCAACCCAGAATTGAGAAGGAACAGAGGCTTGAAGCAGTA ATGTTCGGGTAACATCAAGCAAGTGCCGATTTTTGCGTTCTGCAACGCCATTTTGCTGCGGCGTATATGGACAAGAACAT TGTGAAAGAATCCCCTTCTGCCGCAAGTACTCTTGAAAGTTGTGAGAGATATATTCCCCACCAGAATCAGTACGCAAAAC CTTGATACCTGTGTCAAACTGAGTCTCTATATATGCCAAAAACTGTTTAAACATACAAAAGACATCAGATTTAGAGCGGA GAAAATAGATCCATGTAAACCGGCTATAGTCATCAATAAAGGTTACAAAGTATTTATACTTTGCATGAGACAAGACCGGT GACATACCCCAAACATCACTATGAATAAGATCAAAACATTTAGTGGCACGATGAGCTATAGAGGGAAAGGGAAGAGTCTT GCTTTTAGCAAGTTTGCACACAGAACAATCAAATGCAGAAGTAGGAATAACAATTTTATTACTCAACAATCCAGATTTCA ATAAATGAGCTAAAACAACTGAGTTTGGGTGACCCAATTTTCTATGCCAGTCCTCATACTTATTTGGGACACCATTACAA GCAAAAGACAAAATATTCGACAGAGAAAACTGGAGAGGAAATAGTCTGCCCACTTTAGGCCCCCTCGCGATCACTTTCCC CGACGCCTGATCCTGCACAGAACAACCATCACGAGAGAAATTAACATTACAATTGTTATCGACCAATTGTCCAACGGAAA TCAAATTGGAAACAAGCCCTGGGGAAACAAACACATCTCGAAAGGAGGAATTGATGTCTCCAACAGCAGAAATAGAAAGA ATATTACCATCAGCAATTTGGATATTTTGGGTGCCATGATAAGTGTGAACATTGTGCAATTTTTCAAGGGAACCAGTCAT GTGGTTAGAGGCCCCAGAATCAACAAACCAAGGTTGAGATGTAGGTTTGGACTTACCTTGAAGGCCCAAGGCAGAAAGAG CTGCGAGTACCATTTGTTGTACGGCCTCGGGAGTCAAGGAAGCAGCACTAGAAGTTGTAGGAGCAGAAGTCTGGTCCAGA GAAGTTGTAGTGGCGTGTAAGGCATGCAACGGCTTCCGCGGGGGTCGAGTTGGGCAATCTGCGAGGATGTGACCCTGTTG CTTACAATAGTTGCAAAATTTCTTACTGCAATTCCGAGCAAGATGACCAAATTGCTTGCAAGAAAAGCATTGAACTTGGC GCATATCACGACCTTTGCCTTTACTTTGGGCAGCGTAGGCAACAGAGACAGGATCAGCAACAAAGTCACCACGGGATAAG GTCAGAAGACGCTGCTCTTCTCGAAGTAATTCTGCAAGACACACGTCCAAGGAAGGGGCTGGATTCCTGTTCAGCAAAGC AGCACGCACAGCTTCAAATTCAGGTCGAAGCTTCATGAGAAATTGGTCCCGTTGGCTAATCTGATAAACTTTTTGGACAG CAGTGAGTGAATCTTTAGAAACATCAGCGTGTAAGATTGCTGAATGATCAGCCCAAAGAGTAAGGAACCCGGAGTAATAG TCCTGAATAGAGAGATTTCCCTGACGATAGTTAGCAATGTCGAGCTCCAACTGGAACCGTTTGGCAACATTGTCCTGATT GTAAATACGCTTCAGATAGTCCCACATATCTTTAGCAGTAGAGAAAGCACGTAAGTTGTTGATCATGTGAGGTTCAACAG AAGCCAGAATCCAGGTTATAACTTGGGCGTCCTTTGTTTGCCACGCCGCCAATGTCGTTTTCTCTGCCGGAGCAGTGGAC TGAGCTACATGATCGTCCCAAAGGCCTTTCCCTTTCACGAACATTTGGAACTGAAACTCCCAAGCGCCATAATTTTTGCC CGTAAAGCGGACACAGAAGTTTTCAAAAGTCTTTTCGGAAGCCATGAGGAGCAAAGCAAACTGACCAGAAACAAGATAGC ACAAAAAAAACAGCAACGTTCCAGAAACAGAACAGCAAGAAAAGAAACAGAGCAGCGAACCAGGAATAAAAGCAACGAAC CAGGATGGGCTACAGCAGCACAACACGAACCAGAATCAGAGCAACGAACCAGAGAGCCAAGATGAACCACGAAGGAGGCA CGATGTTGATACGGATAGAAGAAGCAAGAGCGTGTCGCTCTTAGCACACAAGGAAACGGCACAAGAGAAGTGAGAAGACT CGTGATACCATGTCAAGAATAATTGGCTTGATGCCTTCTCTGATTCTATTCTCTTCTATATATAATACAATTACATTTAC AAGCAATAAGGACTAATTAACCCTAATTCCTAATTTGCACAACCTAAATTAGGAAGTCTAATTCTGTACATTCAAATAGG AATATTCTTGATTCTATTTCCTAATTTCTCAAACATAAAATAGGAAACAATCATTAATTGCAGATATCCTCATTGACAGT GGGAACTAAAAACCCTTAATGTTTGCGGCTGCAATTGTAGTTTGTGGCATGACAGAAAATAGAGGAAATAAGACCAAGTT ACATATTTGAGATCATCAATATGTCTAATGTTTAAACAGTTTCATATGTGAAATCTTCCATTTCGTGCAAAGTTTCAGTT GGTCATTGCTTATAAAACAAGCAATGCTTATAAATCATAACTTTTGCTAATGAACTTCAAGGCTAACAGTAGTTTTTTTT TAAATCTTATGTATGTACAGATTTGCGAGACGACAAGCAATTTCTGATTGATCATCCTGGAGCCACAAGAATAACAACTG CTCAGGTAAGTCCACAACAAATTTAAAATAAAACAAAAAAATAAAAGATGCTTATGATTTAACAATGATTGTGTTAAGCA GGGTGAAGAGTTAAAGAAGCTGATTGGTGCAGTCACTTATATTGAGTGCAGCTCTAAAACTCAGCAGGTAAATTATAACC ATTTCATTGGACTCAGCATCTTTTAGCCATATTTTGTAGCAAACTCAAACTCTAGATTAAGATGTAGTTAAAGGAACTTG TGATCTCTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0064700.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGATTATGTTCCAACAGTGTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAG TTAATCTTGGTCTATGGGACACTGCAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTG TTTTTGCTGTGCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGTGGATACCTGAGCTGAGACATTA TGCTCCAAATGTGCCTATTGTGCTGGGTGAAGAGTTAAAGAAGCTGATTGGTGCAGTCACTTATATTGAGTGCAGCTCTA AAACTCAGCAGGTAAATTATAACCATTTCATTGGACTCAGCATCTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0064700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLCFSLISKASYENISKKWIPELRHYAPNVPIVLGEELKKLIGAVTYIECSSKTQQVNYNHFIGLSIF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51420
1 149 149 18.644
IPR003578
PANTHER
PTHR24072:SF292
1 115 115 1.2E-88 –
PANTHER
PTHR24072
1 115 115 1.2E-88 –
SMART
SM00173
4 147 144 3.2E-11 –
SUPERFAMILY
SSF52540
6 137 132 6.15E-42
IPR027417
PRINTS
PR00449
7 28 22 1.6E-22 –
TIGRFAM
TIGR00231
7 115 109 3.4E-29
IPR005225
SMART
SM00175
7 142 136 1.1E-11 –
Gene3D
G3DSA:3.40.50.300
7 145 139 5.5E-45 –
Pfam
PF00071
8 115 108 2.6E-38
IPR001806
SMART
SM00174
9 144 136 2.4E-76 –
PRINTS
PR00449
30 46 17 1.6E-22 –
PRINTS
PR00449
47 69 23 1.6E-22 –
PANTHER
PTHR24072:SF292
116 138 23 1.2E-88 –
PANTHER
PTHR24072
116 138 23 1.2E-88 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0064700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…