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LotjaGi4g1v0064700.7

Overview

Field Value
Gene ID LotjaGi4g1v0064700
Transcript ID LotjaGi4g1v0064700.7
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT5G45970.1 RAC-like 2; Swiss-Prot: sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2; TrEMBL-Plants: tr|A0A1J7FYY7|A0A1J7FYY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0064700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8097889..8098964) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGTATGTTCCAATTAGCATACTTATTGGTCATGGAAGGTTCAATTGTACATATATATACAGG GTTTAAAATTGTGGTTGCCATTGCCACTGTGTCGCAGAATTGCAGACAAGTGGAGGGTGATGCGGTTGCAATTCCGGTCT CTAGAACCGTTACGTTGCGGCTGCAATCGCAGTTGCGGACGAAAATTTGAAACCCTGCATATATCTATGAACTGGAATCA TGGTTTCAGGAGCTAGTTTTGAAGCTAATGCTCTTTCTTTTGCTATGGTTTTCTCTTTGTTAGGATTATGTTCCAACAGT GTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAGTTAATCTTGGTCTATGGGACACTGCAGGTTTGTTAA TCTTCTTTCTGAGGGCTATGTTTCACATTCACTTTAAATGCCAAATTTTGATGAATGAAAATATTGTGTTTGCTTTGTAT AATTTGTGTGGTTACAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTGTTTTTGCTGT GCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGGTTTTTTAACTATCTGCCCCAAATCCTCTTGTT CAGTTACTGTAATTTGGTTTTCAGTTGAATTGTGATGTGAAATCCTTAAAACATATGTATTTGTTGGATTCTTGACAAAC AGTGGATACCTGAGCTGAGACATTATGCTCCAAATGTGCCTATTGTGCTGGTGGGAACAAAACTAGGTATGATAATTCCA TCAAAGTAGCATAGCAAAATTCATCATAATTTGTCAGTAATGATAGTCTTCTTCATATTCCTCTCTCTCTCTCTAGCTAT TCAACTCTACTTCTGTACAATTGTGAAACTTCCATAATTAAACATTAACTAGAGATCTAGCTAAATAAGTCCTTATAAAG GGGAGGGAAACCAGGGCAACGCTCACCAAAGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0064700.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGATTATGTTCCAACAGTGTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAG TTAATCTTGGTCTATGGGACACTGCAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTG TTTTTGCTGTGCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGTGGATACCTGAGCTGAGACATTA TGCTCCAAATGTGCCTATTGTGCTGGTGGGAACAAAACTAGGTATGATAATTCCATCAAAAGATCTAGCTAAATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0064700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLCFSLISKASYENISKKWIPELRHYAPNVPIVLVGTKLGMIIPSKDLAK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51420
1 131 131 20.231
IPR003578
PANTHER
PTHR24072
1 121 121 1.9E-84 –
PANTHER
PTHR24072:SF308
1 121 121 1.9E-84 –
Gene3D
G3DSA:3.40.50.300
3 128 126 2.0E-47 –
SMART
SM00173
4 126 123 9.3E-9 –
SUPERFAMILY
SSF52540
6 120 115 6.1E-42
IPR027417
PRINTS
PR00449
7 28 22 3.1E-28 –
TIGRFAM
TIGR00231
7 120 114 1.4E-31
IPR005225
SMART
SM00175
7 127 121 2.1E-10 –
Pfam
PF00071
8 120 113 1.1E-41
IPR001806
SMART
SM00174
9 131 123 2.6E-66 –
PRINTS
PR00449
30 46 17 3.1E-28 –
PRINTS
PR00449
47 69 23 3.1E-28 –
PRINTS
PR00449
109 122 14 3.1E-28 –
Coils
Coil
126 131 6 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0064700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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