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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0066900 |
| Transcript ID | LotjaGi4g1v0066900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formin-like protein; TAIR: AT2G43800.1 Actin-binding FH2 (formin homology 2) family protein; Swiss-Prot: sp|O22824|FH2_ARATH Formin-like protein 2; TrEMBL-Plants: tr|A0A0L9TN14|A0A0L9TN14_PHAAN Formin-like protein; Found in the gene: LotjaGi4g1v0066900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8358679..8363610) extracted from Lotus japonicus Gifu genome v1.2.
ACGTATTTCTCTATATTTTCATATTTGGATCCATATTAACTTCAACAGTAATCCAAATAATCAGCACCCTTTCACAAATC ATCACCCTTCCCAGCTCCTCAATAGTCAATAATAACTTTTACACTCCAACATGACAGGGCTATCTACCTAGCCTGAGCAT GGTTTCAGAACTTTTAACAGCAACCACCAACATAAAAACAAAACAACCACAGAGAGTAAAAAACTAAAAACAATCACAAC AAAGTTGCATTCATGTTTGAACTAACACTCTTCCTACCATTCCTCTCTTCTCCCTTTCCCACCAGTCTCACACTTATTTC AGTTTCATCACTCTCTCACCACCATTTCTATCAAACTTTCAATACTCTTATTACACTGACATAACATATCATCATGTGCA GTGTCTTAAACACCATACTATTACTACTGTTGTCAGTTCTTTTGTGTGCTTCCTCCACCTCCACCTCCACCGCTCAACAC CGCCACAACCGCCGTGTCCTCCACCAGCCTCTGTTTCCTACAGTCTCTGCTCCTCCTCCAACACAACCACCAGCTTCCTC TCCTGAAACCCAACCAAAACGACAAAAGCAACAACCCAAGCTCCCATTTTCTTCAACCTCTTCCTCTTCTCCACCACCAA AGTCTTTCTTCCCTTCCTACCAAACGCCATCGCTCCCTCCTCCGCCACCTCTCATCGCCACATTCCCGGCCAACATCTCC TCCCTCCTCCTCCCCAGACCAAACTCCCACCGCCACCGCCACGCCGCCTCCGTCGCCGCTGCGGTCACCATCTCTCTCCT CTCTTTAGCTCTCATCTCCGCCGCAGCTGTCTTCGCCCACCGCCGCTGGAAACTCGCCGCCTCCTCCTCAACTCATGATG ACGACAAGGCCTCGAGATCCGACAGCCTCCGCCTCTTCCCGCCGAACGCCGCCGCGCGGAAGCCACGCGGGAAAATGAGC CCGAGGTCGGAGATGCTCTACCTCGGCACGGTGGCCAGCTCAGAAGGTACTGCTGACTCGAGCAGCTGCAATGGGGATTT TCGGCCACCGTATCGGAGACTGAATGACTCGCCGGAGCTTAATCCTCTGCCTCCCCTGCCTCGTTACAACCACAGAGCAT GGACCAGTGGAGAACACGATGAAGAAGAGAAGAAGGAGAAGAGTGAAGAGGAAAACGAAGATGAACAGTTCTTTTCTCCA AAAGGGTCTTCTTCTGATTCTGGAAACAGAGAACAGAGTCCTCCTCTTTCACCACCTCACGTTCTTGCTGCATCAAGCTC TCGTTCCTTGAAAGCCATTGATAGATTCTGCAGAAGCTTCACTTCAAGAACACCATCTTACCCTCGTTCCAATTCTCTCT CTAGTTCCATTTCTCCTTCTCCTTCTCTGAATTTGAGCCCCTCAAGTGTCAAATCTCTAACACCCCATCACAACCCTGCA TCCCCATCTTTCTCTTCTTCTCCTTCTTTTCAGACCACCAAACTGCCTCCTCCTCCGCCGCCACCGCCACCTCCGCTGCC TCGGTTCTGGGAGGCTCCTGTGGTGACTAGTTTTGCTGAACCTTCTCAAAATGTGAATAAGAATGAAACTGAAGAGGCCC AAAAGCCTAAGTTGAAAGCTTTACATTGGGATAAAGTTAAAGCCAGCTCAGATAGGGTCATGGTTTGGGATCGGTTGAGA CCCAGTTCTTTCCAGTAAGACACAAACATACTATTCAAGTTTCATCATTTCAAAAACATGTTTGTCAACATCGTATAGCT TTTGTATTTTGTTATGTACATGTTGTGTGGGGATTCTCTTGTTTTGTGTATTTTATTTTTGTTATGTTGTGTATTGTGTG GGAAGCTTAATGATTTCATTGAGCTGAGGTGCAGGTTGAATGAGGACATGATTGAGACACTCTTTATGGTGAATAATTCC AATGGGAATTCGGGTTTGGGTGTTAGAGATAGCACTGCTTGGCGTCATGCGCTTCATTCTACTCCGGTGGTGCCACCAGA GAATAGGGCGCTTGACCCTAAGAAGTCTCAGAACATAGCAATTTTGCTCCGGGCACTAAATGTGACTATTGATGAAGTGT GTGAAGCTCTCAGAGAAGGTGAGGATGAGTTGCTATCTCCATTTTGTCTTATTTCCATGGACAATTCTAAGGACACTTGA ATTATTGTTTTATTATTGTTTATTATACACTTCCCTTGCATATGGTTGTGCCATTACTCATTAGGATTTTATATCAAATT GACATGGCGTTACACTATCATTATGTATTCATGTGCCTGGGGTACTATTGTTATGTTGGCCCGCATGAGAAATAAATAGA AATAATTTCCCTTGCTTTCCATGCATTTGTCGTGGACCTAAAGATTGCGAATTTCACTATCATTCCATTCAATAGATGCA ACTAAGGTGTTCCTCAACCTCTATCCATATTTTCTATTACTGTTTTTCATAGTCATTCGTTTCCTTACTTCGCAGCATCG AATTCCTCTTACTCTATGGGTGGTCTGTATTGTAGCATCCTATCATCCGGCGAAGATCTTTTGTTCCCATTTGGTGTTCT TTTCCCTGTCTCACCAATCTAATTGTGTCATGTAGGCATGAGTATGACAATTATAACCTTACATGAATAGACATGATGCA ATTTGATTGGTGGGACAGGGAAGAGGACACCAAATAGGGACAAAGGATTCCAGCCCCTTATCATCCCTTGTCAAACAAAT TATGCGCTATTGTTCCTTGTTGAATAATGATGTTTAATCTTCTTCTTCTCCTTGTAAAGTGCCTTTATTTTTTTGACATA TTAAACCTTGTTGTCTATAGGCAGTTGTGATACATTGGGAACAGAACTTCTAGAAAGTTTATTAAAGATGGCTCCAACCA AAGAAGAAGAATCTAAGCTGAAGGAGTTTCGAGATGAATCACCCTTCAAGTTTGGCCCGGCTGAGAAATTTCTTAAAGTC ATGCTTGATATACCTTTTGCATTCAAGAGAGTGGATGCCATGCTTTACATTGCTAATTTTGATTCAGAATTAGAGTACCT TAAGAAGTCCTTTGAAACTCTAGAGGTACATATTCTTCTTCCATCTCAATTGATTTTATGCTTATAATACAGAGTGACCT TCAAGTATCAATCAAGCTTAGTTTTAGCAAATATTAAGTTTCCTATAGTTAACTTGGGAGGACATAGGGTGTAGCAAGTT AACTGCTATTGGTTCTGGAAAGGCGCTTTATGTATCTATCTTCTGTAGATATAAAATTATTACAACAGATAATTACTTGG TCATGTTGAAATGGGAGTTATATAGGTTATAATCTATACCTTCAAATCAAAGGAAAGAAGATATCCTTCTCTTGAATATA GTAGTTAGCAAACCATCAAGTCATTTTACCTCAGCCAAATGTGGCTTTTCTTCTAAGACACTGAAATTGCAGACAGAAAT TTGTTTAGTTCTCAACGCTAGTGAAATATAGTAAAAAAATTAGACATATACTTGAAATTTAAGTTTCGATGGAGCTTTGT AAACACATAACACCAAATAAGCCTAAAACAGACTGGTATTGTTCATTTTTCCATAAGAAAACAAATTTGAAACTATTGTG CTATTGCAATTTGTACGAATGTACATGCAGTTTTCATATTTCATCCTTTTGCACAGGTGGCTTGTGAGGAATTAAAGAAT AGCAGAATGTTTCTGAAGATACTTGAAGCAGTTCTGAGAACAGGAAATCGTATGAATGTTGGCACCAATCGTGGTGATGC ACACGCATTCAAACTGGACACTCTTCTGAAGTTAGTTGATATTAAGGGAACTGATGGAAAGACCAGCCTCTTGCATTTTG TTGTGCAGGAAATTGTCAGAACCGAGGGTTCTCATATCCCCGGTTCTAATCATCAACACGACCCCGCCGACAAAAACATT CAGCAATACACTCTTCAAGAGGAAGTAGACTTTAGGAAGCATGGACTGCAAATTGTTTCTGGATTGAGCGGGGAGCTTAC CAATGTTAAAAAAGCAGCTGCTATGGACTCAGACACGCTAAGAAGTGATGTTGCAAAACTTGCCAGAGGAATAGAAAAAG TGGTGCAAGTTGTAAAGTTAAATGAAGAGTCACCTCTGAAAGAAGCTAACCAGAAATTTTCCGAGGCAATGAAAGGTTTC TTGGAGAGAGGAGAGGAAGAGATTTTAGCAATCCAGGCGCAAGAGAGAAATGCTATCTCTTCTGTAAAGGAGATAACTCA GTATTTCCATGGAAATTCAGCAAAGGAAGAAGCTCATCCATTTAGAATCTTTATGGTTGTGAGGGATTTCCTTTCAATAC TAGATGGTGTTTGCAAGGAAGTTGGGAAAGTAAATGAGAGGACTTTAGTTGGTTCTCGTCAACATGTAATGCCTGCAAAC CATGCACTGCCTGCAATGTTCCCTGAGATTATTGGGAAGCACCATTCTTATTCCTCAGAATCTGAGTAGCAGCAGTTTGA ATTAGTGTTTACATGTTTGGTAATTGATGGGGTCAGATTTTTACAACCCAAACATTATCATGTGAGGTGATATTTTCACT GAAATCCAAGTGAGCTCAAGCCAAGCTTGCCCTCTGATGATGAGAAGTTCATGCTAGCATAGCACTTGTTTTTGTGCCTA AATATCTCTGTATATGTTTTACTGCTTATATATATAATAAGTTGAGTACCATTTTACCCTCCTTTTCTGTGCTTGGTGGA ATGGTTCTCTGTATTGTATTTATAAATGATCCATGAAAGAAATTTTAGAGTTTTCTGATCTTCAGTGTAAATTGAGAATT TGACTTGTCTGCAGTTATGTGCATTGTTTTGTTGTCAAATTTGTGAGTCAACTCGCAGACTTGGATGAGTTTGCTAGTCC ACCTAGCAAATTAAGATGACTCGTTTGTAAACTCGTTTTTTCTTGCCTGGAG
CDS sequence (LotjaGi4g1v0066900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAGTGTCTTAAACACCATACTATTACTACTGTTGTCAGTTCTTTTGTGTGCTTCCTCCACCTCCACCTCCACCGC TCAACACCGCCACAACCGCCGTGTCCTCCACCAGCCTCTGTTTCCTACAGTCTCTGCTCCTCCTCCAACACAACCACCAG CTTCCTCTCCTGAAACCCAACCAAAACGACAAAAGCAACAACCCAAGCTCCCATTTTCTTCAACCTCTTCCTCTTCTCCA CCACCAAAGTCTTTCTTCCCTTCCTACCAAACGCCATCGCTCCCTCCTCCGCCACCTCTCATCGCCACATTCCCGGCCAA CATCTCCTCCCTCCTCCTCCCCAGACCAAACTCCCACCGCCACCGCCACGCCGCCTCCGTCGCCGCTGCGGTCACCATCT CTCTCCTCTCTTTAGCTCTCATCTCCGCCGCAGCTGTCTTCGCCCACCGCCGCTGGAAACTCGCCGCCTCCTCCTCAACT CATGATGACGACAAGGCCTCGAGATCCGACAGCCTCCGCCTCTTCCCGCCGAACGCCGCCGCGCGGAAGCCACGCGGGAA AATGAGCCCGAGGTCGGAGATGCTCTACCTCGGCACGGTGGCCAGCTCAGAAGGTACTGCTGACTCGAGCAGCTGCAATG GGGATTTTCGGCCACCGTATCGGAGACTGAATGACTCGCCGGAGCTTAATCCTCTGCCTCCCCTGCCTCGTTACAACCAC AGAGCATGGACCAGTGGAGAACACGATGAAGAAGAGAAGAAGGAGAAGAGTGAAGAGGAAAACGAAGATGAACAGTTCTT TTCTCCAAAAGGGTCTTCTTCTGATTCTGGAAACAGAGAACAGAGTCCTCCTCTTTCACCACCTCACGTTCTTGCTGCAT CAAGCTCTCGTTCCTTGAAAGCCATTGATAGATTCTGCAGAAGCTTCACTTCAAGAACACCATCTTACCCTCGTTCCAAT TCTCTCTCTAGTTCCATTTCTCCTTCTCCTTCTCTGAATTTGAGCCCCTCAAGTGTCAAATCTCTAACACCCCATCACAA CCCTGCATCCCCATCTTTCTCTTCTTCTCCTTCTTTTCAGACCACCAAACTGCCTCCTCCTCCGCCGCCACCGCCACCTC CGCTGCCTCGGTTCTGGGAGGCTCCTGTGGTGACTAGTTTTGCTGAACCTTCTCAAAATGTGAATAAGAATGAAACTGAA GAGGCCCAAAAGCCTAAGTTGAAAGCTTTACATTGGGATAAAGTTAAAGCCAGCTCAGATAGGGTCATGGTTTGGGATCG GTTGAGACCCAGTTCTTTCCAGTTGAATGAGGACATGATTGAGACACTCTTTATGGTGAATAATTCCAATGGGAATTCGG GTTTGGGTGTTAGAGATAGCACTGCTTGGCGTCATGCGCTTCATTCTACTCCGGTGGTGCCACCAGAGAATAGGGCGCTT GACCCTAAGAAGTCTCAGAACATAGCAATTTTGCTCCGGGCACTAAATGTGACTATTGATGAAGTGTGTGAAGCTCTCAG AGAAGGCAGTTGTGATACATTGGGAACAGAACTTCTAGAAAGTTTATTAAAGATGGCTCCAACCAAAGAAGAAGAATCTA AGCTGAAGGAGTTTCGAGATGAATCACCCTTCAAGTTTGGCCCGGCTGAGAAATTTCTTAAAGTCATGCTTGATATACCT TTTGCATTCAAGAGAGTGGATGCCATGCTTTACATTGCTAATTTTGATTCAGAATTAGAGTACCTTAAGAAGTCCTTTGA AACTCTAGAGGTGGCTTGTGAGGAATTAAAGAATAGCAGAATGTTTCTGAAGATACTTGAAGCAGTTCTGAGAACAGGAA ATCGTATGAATGTTGGCACCAATCGTGGTGATGCACACGCATTCAAACTGGACACTCTTCTGAAGTTAGTTGATATTAAG GGAACTGATGGAAAGACCAGCCTCTTGCATTTTGTTGTGCAGGAAATTGTCAGAACCGAGGGTTCTCATATCCCCGGTTC TAATCATCAACACGACCCCGCCGACAAAAACATTCAGCAATACACTCTTCAAGAGGAAGTAGACTTTAGGAAGCATGGAC TGCAAATTGTTTCTGGATTGAGCGGGGAGCTTACCAATGTTAAAAAAGCAGCTGCTATGGACTCAGACACGCTAAGAAGT GATGTTGCAAAACTTGCCAGAGGAATAGAAAAAGTGGTGCAAGTTGTAAAGTTAAATGAAGAGTCACCTCTGAAAGAAGC TAACCAGAAATTTTCCGAGGCAATGAAAGGTTTCTTGGAGAGAGGAGAGGAAGAGATTTTAGCAATCCAGGCGCAAGAGA GAAATGCTATCTCTTCTGTAAAGGAGATAACTCAGTATTTCCATGGAAATTCAGCAAAGGAAGAAGCTCATCCATTTAGA ATCTTTATGGTTGTGAGGGATTTCCTTTCAATACTAGATGGTGTTTGCAAGGAAGTTGGGAAAGTAAATGAGAGGACTTT AGTTGGTTCTCGTCAACATGTAATGCCTGCAAACCATGCACTGCCTGCAATGTTCCCTGAGATTATTGGGAAGCACCATT CTTATTCCTCAGAATCTGAGTAG
Protein sequence (LotjaGi4g1v0066900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSVLNTILLLLLSVLLCASSTSTSTAQHRHNRRVLHQPLFPTVSAPPPTQPPASSPETQPKRQKQQPKLPFSSTSSSSP PPKSFFPSYQTPSLPPPPPLIATFPANISSLLLPRPNSHRHRHAASVAAAVTISLLSLALISAAAVFAHRRWKLAASSST HDDDKASRSDSLRLFPPNAAARKPRGKMSPRSEMLYLGTVASSEGTADSSSCNGDFRPPYRRLNDSPELNPLPPLPRYNH RAWTSGEHDEEEKKEKSEEENEDEQFFSPKGSSSDSGNREQSPPLSPPHVLAASSSRSLKAIDRFCRSFTSRTPSYPRSN SLSSSISPSPSLNLSPSSVKSLTPHHNPASPSFSSSPSFQTTKLPPPPPPPPPPLPRFWEAPVVTSFAEPSQNVNKNETE EAQKPKLKALHWDKVKASSDRVMVWDRLRPSSFQLNEDMIETLFMVNNSNGNSGLGVRDSTAWRHALHSTPVVPPENRAL DPKKSQNIAILLRALNVTIDEVCEALREGSCDTLGTELLESLLKMAPTKEEESKLKEFRDESPFKFGPAEKFLKVMLDIP FAFKRVDAMLYIANFDSELEYLKKSFETLEVACEELKNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLVDIK GTDGKTSLLHFVVQEIVRTEGSHIPGSNHQHDPADKNIQQYTLQEEVDFRKHGLQIVSGLSGELTNVKKAAAMDSDTLRS DVAKLARGIEKVVQVVKLNEESPLKEANQKFSEAMKGFLERGEEEILAIQAQERNAISSVKEITQYFHGNSAKEEAHPFR IFMVVRDFLSILDGVCKEVGKVNERTLVGSRQHVMPANHALPAMFPEIIGKHHSYSSESE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 14 | 860 | 847 | 0.0 | – | |
| PANTHER | 14 | 860 | 847 | 0.0 | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 123 | 96 | - | – | |
| MobiDBLite | 40 | 92 | 53 | - | – | |
| MobiDBLite | 42 | 56 | 15 | - | – | |
| MobiDBLite | 57 | 84 | 28 | - | – | |
| Phobius | 124 | 148 | 25 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 149 | 860 | 712 | - | – | |
| MobiDBLite | 155 | 296 | 142 | - | – | |
| MobiDBLite | 155 | 170 | 16 | - | – | |
| MobiDBLite | 242 | 266 | 25 | - | – | |
| MobiDBLite | 267 | 293 | 27 | - | – | |
| MobiDBLite | 310 | 360 | 51 | - | – | |
| MobiDBLite | 310 | 379 | 70 | - | – | |
| MobiDBLite | 361 | 379 | 19 | - | – | |
| SUPERFAMILY | 365 | 825 | 461 | 9.81E-98 | – | |
| SMART | 397 | 827 | 431 | 1.3E-132 | ||
| ProSiteProfiles | 397 | 838 | 442 | 52.341 | ||
| Pfam | 400 | 812 | 413 | 4.6E-115 | ||
| Gene3D | 474 | 833 | 360 | 5.2E-86 | ||
| Coils | 579 | 599 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0066900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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