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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0068500 |
| Transcript ID | LotjaGi4g1v0068500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|A0A072V1S9|A0A072V1S9_MEDTR T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0068500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8630155..8631753) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCATCAATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGCAAGGAAGACATCCGGCA TGCCAACATCCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATCT CCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCC AAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCACCACCGTCGTCGTTATCGCTGGCGC ACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCCA TCAAAGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGTGACTCCCTCGTCAAATCCGCCAGC ACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCTCTCGCTGTCGACGCCGTCCTCACAGTCAT CGATCCCGCCCAGCCTGAAATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCG AGCTCGTCACGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATT GCCGTGATCCAGTTCCAGATTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGA TAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGA TTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAA GATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGC CGAGAAGTTGGGCTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGG ACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGAT GCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAG GCAGCTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCA TTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGT GAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGT AAGCACGAGTGCTATCACCTTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
CDS sequence (LotjaGi4g1v0068500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGCAAGGAAGACATCCGGCATGCCAACAT CCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATCTCCACCTCCT CCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCCAAGATGCTC GTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCACCACCGTCGTCGTTATCGCTGGCGCACTCCTCGA GCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCCATCAAAGCCG TCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGTGACTCCCTCGTCAAATCCGCCAGCACCTCCCTC AACAGCAAGGTCGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGAT TTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGA GGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAGA GATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAAGATGTGGAAAGGGATGAGAT TGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGGGCTATGCTG ATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAACT GTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTG CTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGGTGCCTGGGCAA AGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAG AATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCAA TGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTGCTATCACCT TGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
Protein sequence (LotjaGi4g1v0068500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPHRSSKTESYVDNKRKEDIRHANILAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKML VELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSASTSL NSKVVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILR DAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTTT VLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAE NAGLNPIAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 168 | 160 | 3.8E-240 | – | |
| PANTHER | 9 | 168 | 160 | 3.8E-240 | – | |
| Gene3D | 15 | 161 | 147 | 1.3E-34 | ||
| CDD | 15 | 471 | 457 | 0.0 | ||
| SUPERFAMILY | 16 | 470 | 455 | 2.22E-83 | ||
| Pfam | 33 | 168 | 136 | 2.0E-46 | ||
| PRINTS | 35 | 51 | 17 | 4.7E-19 | ||
| ProSitePatterns | 38 | 50 | 13 | - | ||
| PRINTS | 57 | 75 | 19 | 4.7E-19 | ||
| PRINTS | 87 | 106 | 20 | 4.7E-19 | ||
| ProSitePatterns | 87 | 95 | 9 | - | ||
| Gene3D | 162 | 312 | 151 | 1.0E-70 | ||
| SUPERFAMILY | 166 | 325 | 160 | 8.89E-42 | ||
| PANTHER | 168 | 470 | 303 | 3.8E-240 | – | |
| PANTHER | 168 | 470 | 303 | 3.8E-240 | – | |
| Pfam | 172 | 470 | 299 | 8.2E-88 | ||
| Gene3D | 313 | 472 | 160 | 5.4E-51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0068500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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