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LotjaGi4g1v0075200.1

Overview

Field Value
Gene ID LotjaGi4g1v0075200
Transcript ID LotjaGi4g1v0075200.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TAIR: AT4G34030.1 3-methylcrotonyl-CoA carboxylase; Swiss-Prot: sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; TrEMBL-Plants: tr|G7JL66|G7JL66_MEDTR Methylcrotonyl-CoA carboxylase beta chain, putative; Found in the gene: LotjaGi4g1v0075200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:9651523..9657002) extracted from Lotus japonicus Gifu genome v1.2.

TATTAATAGAGTCATCATCACTTTCATTCTCATCTGAATTGTCATACCTTTGCTTATTCCTCTTCTTGCTCTTGTTCCCT TTCCTTTTATTGTTATTTCTTTGTTTATGATCTTCTTCTTCCTCCTCTTAAAATTCACAATAGATATATGACTGCCTTGA AGAATTAGTAAAATTATTTCTTCCCTTCTTCCTACGTGAATCGTCTATTTCATTATTTGATGATTTCTTTGATGTGGAAT CAGATTTTTCCCTAGGTTTAATTTGTAAGCAGAAAATTTCATAAAGCAATTATATGAAATTAGAACACCAACACTTACTT GTTGAAGACATGATTTTGGAGAAGAATGATTGTTGTTCTTGATTCAGTTTTCCTACAACGTTGAACGACCAGATCTTTCT TTGTATCCCACATTCCCTTTCACAAAGCTCAATGGGGCAAGTTGTGGAGCAGATAGTTTTCTTATGTCGTGATTACAGAG AGGACCTAGCCAAACCTATTATAACCTAGTCCCTACCCATCATGGCCCAAGAATTACGACCTACACTAATCAGATTATAG GTAGGAATCACTTAATAAAAAGAAGTCAATGCACCCGTAAGAACTATGAATTAACCTGTTTTTACAAACAAAATAACAAT TAATTGCATCCCACACATTGTTAGATAAATCTATATCACCCATTATATCACTTAATTGTCCTCTAATTCTTATCATACTT CATTCCACTTATAAGCTAAGTATTCACAAAACTTAATTCAATAAATTATTTCTCCCAAGAGCAGAATTTTACTGATTGTT AGCTCGTGTCCTAAACACAAAAGACGTGGCGAGGTTATCCAATGTCATAATCATCACATTTTTTTATCTTCATCGGATAG ACACAGTTAGCTGGACACTATCATGTGTTCGTTCAATGATGACATTATTAATTGTCGTGTCCGCAAACACAGGTAGAAAA ATCAACACTGAATAGCAAAACCACATAGGATAAACAATGATCGGGTTAATCGGAAGAAAAGCAAGCTGGGCATCCTCCAA TTTGGTAGGAAGAAGAGGCTTTTGCTTGGGAATCCTTCCTCATAGCAATGGTGGTGCCACTGCCATGGAAGATTTGCTTT CCCAGCTCCAATCTCACGTCCATAAAGCTCTTGCTGGTGGAGGAGCTGAAGCAGTGAAGAGGAACACAAGTAGGAATAAA CTTCTACCGAGAGAAAGAATCGATCGCCTTCTTGATCCTGGTTCTTCCTTCCTCGAGCTTTCACAGGTTTGCATATAAAT ATATAGGTGCCCATGTGGTTTAATTTACTTTTTGTGTTCAGGATTGATTTGGGTTTGTGGAAAGTTTGTGACTTTAGTGT GTTTGGTTACACATTGGGAGCTTCAGAATCAACTCTCATAGAGTGAAATCAATTCTGGATGACAATATTGTGGAAGTGAT TTCGTTCAGAATTGATTTCAGCTCCAAAATAGAAGCTAGAGAGAGTGACTTTTGCATTAGACATAATCAATTCTGAGATT TTACAACTGAATTTTATAAGATTACCCTACAAAAATCATTTTTTTCACAAATGTATTGAAATATAAATCACAACATTTTA GCTCATTTATCCTGTGCAATTTTTCTAGAATCAATTTTGCTGACACTGATCCAAACAAACACACATAATAGCTTCTGCGT TGAACATAGTCAACTACGAGATTTCATAACCGGATTGCACAACATTAAAATAACCACTTTTTTCAAAGATGTATCCAAAC ATAAATCATTTCACTTTTAACTCACTTTACCTATAGTCAAGTTTGCCAAAATCAATTGTGATATCCCTGATTCTAACACG TACTTAGTCATGTGAAGTGACTACTTGCAATGAGTAATGGTTTAAGGGTTGGAAATGGGAATTATGAGAAATGGGTTATG TGTTTTACCAAAGAAAGGTTTTAACTTTAGATTGGTAAAGCTTGCAGGACATGAGTTGTATGAAGAACCCTTGCCTTCTG GTGGAGTTGTCACTGGGATAGGTCCTGTGCATGGGCGACTTTGTATGTTTGTGGCCAATGATCCCACTGTTAAGGGAGGG ACCTATTATCCTATTACTGTTAAGAAGCATCTCAGAGCACAGGAGATTGCTTCTCAGTGCAAATTGCCCTGCGTGTATCT TGTTGACAGTGGAGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCAGACAGGGAGAACTTCGGTAGAATATTCTATA ATCAAGCTCTAATGTCTGCTGAAGGGATTCCGCAGATTGCGTTGGTTTTAGGTTCTTGCACGGCTGGGGGTGCATACATA CCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGACCTCCTCTTGTTAAGGTCAG CTCCAGCCACTCTGATATTCCAAAATGCTATTGTGTGTGATAGTCTCTGTCTATTTGTTTGTTCTTCTTTGTTTTTTTAC GTTGAGAAGTTCCACATTGACTAGAGATATGGCCAAAATAGTCCTTATAAAGGGTAGAACAACTTTCACTTCTAAGGTAG CTTTTGGGATAGTGTTAGGCCTGACCCAAATTTTAAGTTGTATATCTTTTAACCATAGTTCACATTAATCAAATGATTTT ATAGGCTGCTACTGGAGAAGAAGTCTCTGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACATCAGGTGTTTCAG ACTATTTTGCTCAAGGTATTTTCTCCACCACTTATCTGAATGGATAGAGCATGTGATAGCTGCTGTAGTCTTATTGGTTT CTATTATTGATATTATACATTTTTTGCTTCTCTGTAGATGAATTTCATGCACTTGCACTTGGGAGGAACATCATTAAGAA TTTGCACATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATTTAAGCTATGAATATAAAGAGCCTCTATATGATG TCAACGAACTTCGTTCTATAGCCCCCACTGATCTTAAGAAGCAGTTTGATGTCCGATCAGTTATTGCTCGTATTGTGGAT GGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTGTGAGGGCATATTCACCTTACTGTCTACATGCTTAATCATT ATATTTATATCTATGTGTTGCTATGAAACTTCACTTTTGCTTTTCTCTCTAGGTGCTAGTACCCTTGATGAGTTGTCACA CATTTATTGGTTGTTAGTTTTCACAATAAATATTTGGAGTCCACCAAGTATATGCAGCAACCAAGAAATGTTTGACAAGT TCTAAATGTACTGGTAGCCTGGAAAAGAAGTACTTTAATGATTACATGCGTGTATGATATATCCTTATTCAACATATATG CAGACTCTCGTAACAGGTTTTGCTAGAATTTATGGACAGCCTGTAGGAATTATTGGAAACAATGGGATTTTATTCAACGA ATCTGCTCTGAAAGGGGCCCATTTCATTGAAATATGTACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTG GATTCATGGTATGAATTTAAACTTTTTCTTCAGTTACTGTGATTATGATAGTTTGTTTTATTATTCTGAGTAGAATGGTT CCCTTCTCCTTCAGAACATCACTGGGTTCGCAGTATGAATAATATCATTATATTTTAGTGTTTATTAGTTGCGAGATGCT GAATTGTCTAGTATTGTCCATGATGAGTGATGACATGAATAAATGATCTACATGATTGATGGGGGGAATCAGGAAATAGT AACGAGAGTTTGAGAATCATCATCTGTAATTTGATAAAACCATAATGATGTGTAGATTTAGACAATCCAGCTGGATTATT GACACTGTAAGACAAGTCAATGCACATGAGATCTCAAACTTCAGTTTGATCTATCTCCTTGACCTTTTTTAGCCATGATC CATATTCTTATATTAATTATAGAAGCTGAAGAGATACATTTGCTATTAGCTTGTCTCTCATTTTTTCCAGGTCAAGAATG GTTAAATTATTCAAATATGACACTGAAAAACTATCCCATTAGTAGTTTGCTGAAGAATGAGACTGTAATTTGTGTCTATT TGGTAGGTGGGCTCAAGATCTGAGGCAAATGGCATAGCAAAATCTGGTGCGAAAATGGTGATGGCAGTTTCTTGCGCAAA GGTTTGTCAATTCTCACCTATTTATAAAACTGTTTACAATTGTGCTTATATGGCGTCTGCACCATGTCTTTTTGGGGGGT GGGGGGTTGGAGCTGTTAAGTCAATTTAAACGAAAGAAAATAGAAGGTATAGTAGAATGAAAGAGGTTGTAATATGTTTA TAAAGGTGAATCTCAACTCATGCAAGATATTCTCGAAAATAAATTTTTTTGCTTCAAATAAATATCTGCAGGTACCTAAA ATCACCATAATTGTCGGCGGAAGCTTCGGTGCAGGAAACTATGCAATGTGTGGCCGTGCCTACAGTCCCAATTTCATGTT CCTTTGGCCTAATGCCAGAATATCTGTGATGGGTGGTGCTCAGGTAAGTGTATCTCTCTACAAATTATTGCCATTTCTGA ACAGCTCTCGACACCGTCATTGTTCTGAACTTTTTGAGATGCATATCATGTTTTATGCGTGTGTCCTCCATTTGAAATCA AACTTGATTTTTGAATATTTGATTGATCATTAGTTGAAATTCATCTGGGTTTTGTGGATTTTACATATATTCCTGTGGAA TGTGATCATCAGGCTGCTGGGGTACTGTCTCAAATAGAGAAAACCAACAAGAAAAAGCAAGGAATTCAGGTAAAATATGA TTGAGGAAATATTGTTTAGTTTACTTGCTTATAACAAATTCATGGCTTTCTCATTTGCCTTTTTTGTGTCTTGATGTGCA TTATACTTGTAATGCAGTGGAGCAAGGAAGAAGAAGAAAAGTTCAAAACAAAAGTAGTGGAGGCTTATGAGGTAGAAGGA AGTCCTTATTACTCAACAGCGAGGCTTTGGGATGATGGAATCATAGATCCAGCGGATACAAGAAAAGTGATTGGTCTGAG CATATCTGCTTCCTTGAACCGCGCCATAGAAGATACCAAATTTGGTGTGTTTAGAATGTGATTGCTGTGTGCACTAGAAC TGGCGGCTATCCTCCAGTGTGACATAGATTTGTTACTTCTGTAATTAAAAGGAAACAAACACTACCTGAAAAGGGGAACA AGTGAAAAGTAATTTATGTCAATGTGTAACAGCCAGATTTGTTTAGAATAAAAAGTTCAATCGCACTTTTAGTCCCTCAT CTCTATCGCGACTGTAAGATTAAAGTGATTTTGTTATAGAATTTATTAACATGTTACAATTAGGTTCTTTCAGTAGTGTT CCATTCAAATTTTAGCTGAATTTTCTCATATATGGCCTTGAATATCTTGATAACAATACACATAAAAAGTTCTAAGTTTG TAATATCTAGTTTTTATCTGCATCTATTTCTTGTTGCACC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0075200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCGGGTTAATCGGAAGAAAAGCAAGCTGGGCATCCTCCAATTTGGTAGGAAGAAGAGGCTTTTGCTTGGGAATCCT TCCTCATAGCAATGGTGGTGCCACTGCCATGGAAGATTTGCTTTCCCAGCTCCAATCTCACGTCCATAAAGCTCTTGCTG GTGGAGGAGCTGAAGCAGTGAAGAGGAACACAAGTAGGAATAAACTTCTACCGAGAGAAAGAATCGATCGCCTTCTTGAT CCTGGTTCTTCCTTCCTCGAGCTTTCACAGCTTGCAGGACATGAGTTGTATGAAGAACCCTTGCCTTCTGGTGGAGTTGT CACTGGGATAGGTCCTGTGCATGGGCGACTTTGTATGTTTGTGGCCAATGATCCCACTGTTAAGGGAGGGACCTATTATC CTATTACTGTTAAGAAGCATCTCAGAGCACAGGAGATTGCTTCTCAGTGCAAATTGCCCTGCGTGTATCTTGTTGACAGT GGAGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCAGACAGGGAGAACTTCGGTAGAATATTCTATAATCAAGCTCT AATGTCTGCTGAAGGGATTCCGCAGATTGCGTTGGTTTTAGGTTCTTGCACGGCTGGGGGTGCATACATACCTGCTATGG CTGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGACCTCCTCTTGTTAAGGCTGCTACTGGAGAA GAAGTCTCTGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACATCAGGTGTTTCAGACTATTTTGCTCAAGATGA ATTTCATGCACTTGCACTTGGGAGGAACATCATTAAGAATTTGCACATGGCTGGGAAAGATGTCTTGGCAAATGGATTGC AAAATTTAAGCTATGAATATAAAGAGCCTCTATATGATGTCAACGAACTTCGTTCTATAGCCCCCACTGATCTTAAGAAG CAGTTTGATGTCCGATCAGTTATTGCTCGTATTGTGGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTAC TCTCGTAACAGGTTTTGCTAGAATTTATGGACAGCCTGTAGGAATTATTGGAAACAATGGGATTTTATTCAACGAATCTG CTCTGAAAGGGGCCCATTTCATTGAAATATGTACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTC ATGGTGGGCTCAAGATCTGAGGCAAATGGCATAGCAAAATCTGGTGCGAAAATGGTGATGGCAGTTTCTTGCGCAAAGGT ACCTAAAATCACCATAATTGTCGGCGGAAGCTTCGGTGCAGGAAACTATGCAATGTGTGGCCGTGCCTACAGTCCCAATT TCATGTTCCTTTGGCCTAATGCCAGAATATCTGTGATGGGTGGTGCTCAGGCTGCTGGGGTACTGTCTCAAATAGAGAAA ACCAACAAGAAAAAGCAAGGAATTCAGTGGAGCAAGGAAGAAGAAGAAAAGTTCAAAACAAAAGTAGTGGAGGCTTATGA GGTAGAAGGAAGTCCTTATTACTCAACAGCGAGGCTTTGGGATGATGGAATCATAGATCCAGCGGATACAAGAAAAGTGA TTGGTCTGAGCATATCTGCTTCCTTGAACCGCGCCATAGAAGATACCAAATTTGGTGTGTTTAGAATGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0075200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGLIGRKASWASSNLVGRRGFCLGILPHSNGGATAMEDLLSQLQSHVHKALAGGGAEAVKRNTSRNKLLPRERIDRLLD PGSSFLELSQLAGHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIASQCKLPCVYLVDS GGAFLPKQADVFPDRENFGRIFYNQALMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGE EVSAEDLGGATVHCKTSGVSDYFAQDEFHALALGRNIIKNLHMAGKDVLANGLQNLSYEYKEPLYDVNELRSIAPTDLKK QFDVRSVIARIVDGSEFDEFKKLYGTTLVTGFARIYGQPVGIIGNNGILFNESALKGAHFIEICTQRNIPLVFLQNITGF MVGSRSEANGIAKSGAKMVMAVSCAKVPKITIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQIEK TNKKKQGIQWSKEEEEKFKTKVVEAYEVEGSPYYSTARLWDDGIIDPADTRKVIGLSISASLNRAIEDTKFGVFRM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.90.226.10
29 287 259 6.0E-94 –
PANTHER
PTHR22855:SF13
34 556 523 3.6E-290 –
PANTHER
PTHR22855
34 556 523 3.6E-290 –
ProSiteProfiles
PS50980
37 293 257 55.472
IPR011762
SUPERFAMILY
SSF52096
38 279 242 9.96E-69
IPR029045
Pfam
PF01039
63 547 485 2.2E-160
IPR034733
Gene3D
G3DSA:3.90.226.10
295 556 262 2.3E-103 –
SUPERFAMILY
SSF52096
298 556 259 1.29E-82
IPR029045
ProSiteProfiles
PS50989
302 548 247 51.271
IPR011763

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016874
Molecular function Ligase activity Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0075200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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