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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078700 |
| Transcript ID | LotjaGi4g1v0078700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G01860.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5XET4|PP142_ARATH Pentatricopeptide repeat-containing protein At2g01860; TrEMBL-Plants: tr|I1KM40|I1KM40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10272298..10274431) extracted from Lotus japonicus Gifu genome v1.2.
CTTATGCGTGTCTCTCTCGTTCAGTGAGTTGAATGACTCTGAAGATAAAATAACAAGTTGCTCATTGAGGCTTCACCGCC TTCACCAATTTCATTCCCTTTCCACTCATGCTCGACGGAACACAAGGTACACTCACCCTCTCCACTTATTTCACTGTTTT CTAGGATTTTTCTTCATTCCTAATTTTTCTCACACTCTGTTAAAGTTATCTATTTGAATAATGCAGACCACTTGTTTGAT GAAAGTCCTCCTCGGACACTAAAATACTCAGTGACAATTCTCTGTGCAGATTCTCAGTGACAATGCAACTACCACATTTT TAACACCTAATAATGGACTGTGCAGTGTCATTTTCTAGTGTGTACTTCGTTCCGTTGCGAAGAACCGCTTTCGCAGCACA TTCAAATAGGAGAAGAAGAACACCACCACCACCACCACCGAAGCACCTTCGATATCCACGTCGTTCCAAGCCACCTCCTG AGTTTGGTGTCAATCAGTTCCTGAGGAAGCCTGATACCGCCCCTAAACCTACGCAGCAAGAACGTATTGATTTCGTTGAA GTAGAGGAAGAAAATGCTGATGTTGTTTGGGAATCAGATGAGATTGAAGCCATTGCATCGCTTTTTCAAGGTAGAATACC GCAAAAGCCTGGAAAGTTAGACCGAGAAAGGCCTCTTCCTCTTCCAGTTCCGCATAGGCTTCGACCGTTGGGATTACCGA CACCAAAAACACTAGTGAAGTTGACAGCTCCAGCTGTAGTTTCTGCTCGAGCTTCTATGGCTAAGAAGTTGTTTAAAAGC CCGAGTTTCCTGGTTGGGTTAGCCAGAGAGATTGGTAGGCTTAATCCAGAGGAAGATGTATCTATAGTTCTTGGAAAGTC GGTGCATATCCTGCGGAAGGGGTCTTTATCGCTGACTATAAAAGAATTAGGCCAGATGGGGTGCCCTGAGAGAGCTCTAC AGACATTCTGTTGGGCTCAAAATCAACCTCATCTCTTCCCAGATGATTGGATTCTGGCCTCAACTGTTGAGGTCTTGGCC AGGAATCATGAGTTGAAAGTTCCATTCAACATGGACAAGTTTACTGGTGTGGCGAGTCGTAACGTGTTGGAGGCAATGAT AAGAGGTTTTATAAAAGGAGGAAACCTTAGACTTGCGTGGAAGGTGCTAGTAACAGCCAGAAGGGAAAAAAGATTGTTGG ATCCCAGCATTTACGCAAAGCTAATATTGGAGCTTGGAAAGAACCCTGATAGATACAGACATGTGGAGCCCTTGTTAGAT GAACTTGGAGGACGAGATGAATTGAATTTAAGCCAGCAAGATTGTACTGCTGTAATGAAAGTCTGCACTAGGATGGGAAA ATTTGAGGTAGTTGAGAGCCTTTTTAGTTGGTTCAAGCAGTCCGGGTGTCAACCAAGTGTAGTTATGTTCACTGCTGTAA TTCACAGCCGCTACACAGAGAAGAAATACAGGGAAGCATTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGCCTCTTT AACCTTCCAGTTTATCGTGTTGTAATAAAGCTGTTTGTTGCTCTAAAAGACCTATCTAGAGCCATGAGATATTTTTCAAA ACTTAAAGAAGCGGGATTTTCTCCCACTTACGGTTTATACAAAGACATGCTTGAAATTTACATGGCCTCTGGGAGGATAG CAAAGTGCAAAGAGATCTGCAAGGAGGCTGAGGTAGCAGGTTTCAAACTGGATAAATATCTAGTGTCACTTGATTCCATA AGTAAAACACTGTAGAGTCTTAGAATCCTCCAAGCATTATCATTTTTTGCATTCTGAATCCCGATTGATAATTTAGCGTC TACTATTCCATTTGTACATTGTCAAACATAATGAATTCCTTGACATTTATATGATTATAAGAGAATATGCAGCTGGACCT GGGATTGTAGAGGCATCAGACATCCCTGCAGCTAAGCTAGTGTGGAAGAGAAGTGACAAAAAAATCAGTTACTTCCAACT ATAGGACAATAGAATCTGTTTTGTTTGAGAAAGTGTTTTCTATTTTCACTTGATGCTTTTAATATTAATTATAAAAAATG CCATTTTATCCTTACTTCCCCCCTATTTTAAAAGATTTTAATGGCAGGCTATGT
CDS sequence (LotjaGi4g1v0078700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGTGCAGTGTCATTTTCTAGTGTGTACTTCGTTCCGTTGCGAAGAACCGCTTTCGCAGCACATTCAAATAGGAG AAGAAGAACACCACCACCACCACCACCGAAGCACCTTCGATATCCACGTCGTTCCAAGCCACCTCCTGAGTTTGGTGTCA ATCAGTTCCTGAGGAAGCCTGATACCGCCCCTAAACCTACGCAGCAAGAACGTATTGATTTCGTTGAAGTAGAGGAAGAA AATGCTGATGTTGTTTGGGAATCAGATGAGATTGAAGCCATTGCATCGCTTTTTCAAGGTAGAATACCGCAAAAGCCTGG AAAGTTAGACCGAGAAAGGCCTCTTCCTCTTCCAGTTCCGCATAGGCTTCGACCGTTGGGATTACCGACACCAAAAACAC TAGTGAAGTTGACAGCTCCAGCTGTAGTTTCTGCTCGAGCTTCTATGGCTAAGAAGTTGTTTAAAAGCCCGAGTTTCCTG GTTGGGTTAGCCAGAGAGATTGGTAGGCTTAATCCAGAGGAAGATGTATCTATAGTTCTTGGAAAGTCGGTGCATATCCT GCGGAAGGGGTCTTTATCGCTGACTATAAAAGAATTAGGCCAGATGGGGTGCCCTGAGAGAGCTCTACAGACATTCTGTT GGGCTCAAAATCAACCTCATCTCTTCCCAGATGATTGGATTCTGGCCTCAACTGTTGAGGTCTTGGCCAGGAATCATGAG TTGAAAGTTCCATTCAACATGGACAAGTTTACTGGTGTGGCGAGTCGTAACGTGTTGGAGGCAATGATAAGAGGTTTTAT AAAAGGAGGAAACCTTAGACTTGCGTGGAAGGTGCTAGTAACAGCCAGAAGGGAAAAAAGATTGTTGGATCCCAGCATTT ACGCAAAGCTAATATTGGAGCTTGGAAAGAACCCTGATAGATACAGACATGTGGAGCCCTTGTTAGATGAACTTGGAGGA CGAGATGAATTGAATTTAAGCCAGCAAGATTGTACTGCTGTAATGAAAGTCTGCACTAGGATGGGAAAATTTGAGGTAGT TGAGAGCCTTTTTAGTTGGTTCAAGCAGTCCGGGTGTCAACCAAGTGTAGTTATGTTCACTGCTGTAATTCACAGCCGCT ACACAGAGAAGAAATACAGGGAAGCATTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGCCTCTTTAACCTTCCAGTT TATCGTGTTGTAATAAAGCTGTTTGTTGCTCTAAAAGACCTATCTAGAGCCATGAGATATTTTTCAAAACTTAAAGAAGC GGGATTTTCTCCCACTTACGGTTTATACAAAGACATGCTTGAAATTTACATGGCCTCTGGGAGGATAGCAAAGTGCAAAG AGATCTGCAAGGAGGCTGAGGTAGCAGGTTTCAAACTGGATAAATATCTAGTGTCACTTGATTCCATAAGTAAAACACTG TAG
Protein sequence (LotjaGi4g1v0078700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCAVSFSSVYFVPLRRTAFAAHSNRRRRTPPPPPPKHLRYPRRSKPPPEFGVNQFLRKPDTAPKPTQQERIDFVEVEEE NADVVWESDEIEAIASLFQGRIPQKPGKLDRERPLPLPVPHRLRPLGLPTPKTLVKLTAPAVVSARASMAKKLFKSPSFL VGLAREIGRLNPEEDVSIVLGKSVHILRKGSLSLTIKELGQMGCPERALQTFCWAQNQPHLFPDDWILASTVEVLARNHE LKVPFNMDKFTGVASRNVLEAMIRGFIKGGNLRLAWKVLVTARREKRLLDPSIYAKLILELGKNPDRYRHVEPLLDELGG RDELNLSQQDCTAVMKVCTRMGKFEVVESLFSWFKQSGCQPSVVMFTAVIHSRYTEKKYREALAVVWEMEASNCLFNLPV YRVVIKLFVALKDLSRAMRYFSKLKEAGFSPTYGLYKDMLEIYMASGRIAKCKEICKEAEVAGFKLDKYLVSLDSISKTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 480 | 459 | - | – | |
| MobiDBLite | 23 | 69 | 47 | - | – | |
| PANTHER | 26 | 472 | 447 | 1.4E-235 | – | |
| PANTHER | 26 | 472 | 447 | 1.4E-235 | – | |
| Gene3D | 162 | 285 | 124 | 2.0E-5 | ||
| ProSiteProfiles | 255 | 289 | 35 | 6.116 | ||
| Gene3D | 303 | 478 | 176 | 1.7E-23 | ||
| ProSiteProfiles | 327 | 361 | 35 | 8.736 | ||
| Pfam | 354 | 409 | 56 | 3.8E-5 | ||
| ProSiteProfiles | 362 | 396 | 35 | 6.928 | ||
| ProSiteProfiles | 397 | 431 | 35 | 9.175 | ||
| ProSiteProfiles | 432 | 466 | 35 | 6.007 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0078700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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