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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0083600 |
| Transcript ID | LotjaGi4g1v0083600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycine cleavage system H family protein; TAIR: AT2G35120.1 Single hybrid motif superfamily protein; Swiss-Prot: sp|O82179|GCSH2_ARATH Glycine cleavage system H protein 2, mitochondrial; TrEMBL-Plants: tr|I3S7G1|I3S7G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0083600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10945360..10947666) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTGCAGACAATTGTGGGCTTCAAGAGCTGCGTCGTACCTGAGGATCTCTGTCTTCAACAGAGCCTTCTCCAGTGG TAATCTCCTTATCTCTCTCTATGATCTGGTTTTTCATTCATTTTGTTTCTGTTTCATCGATCACTTTTGATTGTGTTTTT GGTCATGTAATTTATCTGGTGCGTGCGATAGAATTTCTAGATCTTGATCCAATGTTATTGAATGTTTCATTTTAAATCTC GCATCGTATCGTATGATCTTTACTTTTATATCATTGATGCGTGTTAGTTTTCTAGGTGGTGGTGGTGGGGTGGTAGTGGA GCCACCAGCAGTAGCATTCACAATGCCCCACCTCCAAATTTTATGACATGATGAGGATATAGTTTTTGGGAATTGATTTT AATGTCACCCCTATTTGTTTTCTCGCCGCCACCCGATTTTACCGTGTGGGGATCAATTACACACCGCACTGAAAACAAAT TATACATTCCGCAACTTAAAATGGCGGAAGGGGATGACATGAATATTAAGGGTGGCATTAAAATCAATTCCCATTGTTTT GTTTGTGGACAAATGAAATTTTGGATAGTGACAAGGAACCTGGTGTTGGTAATTGATAGTGACATTGTGACAATAGGAAG GATTTTGGATTTTGGAACACTAAATGGGTAAGGAAACTTGGATTTAGTCTTGGATTTATTCCAAGTGTATGTGTGGTAAA TGTTTCATGTCTCTTTACTTTTGAATCTTGGTTTGTACCTATGCTGTTTATTACATTTTCAATATTTGAGCTTTGATATG ACTTCAGAGAGAATGGCTTTTCTCATTCTTTTTAATGCATATTTGGGAATTTGGTGGATAATTACTTTTGGGCTCAGACT TGTTTTTCAAAGTAAAATTTCCATCAAATATAACTTATTAGCATTTTGGGTAACAAAGTAATAAGTTTATTTTCATGAGT AAATGCATTTTCTACACACTTCTACCAAGAATTCAAAGTAAATGCATTTTTTTTAGTTATATGCATCAATTATACATTTA TACCTATACTTGTCCAAACAATATTCATAAATCCAAGTTACATCTGGGTAAACATTACTAAACACAACTCATTTGTTCTT AGTAATTCTTTCAAAATGCATTCTACTTAAACAGTAATTCTCCTCCTTGAAACCATAGAGAGAGGCCCTCAATATCCCAG ATCTGATGGGCTCTTTAAGTTCCTGAATTTACTTCTTTCCTGAACTAATATCTGGTAAATCATTATGGAGCTTGACTTGA TGTTAATTCACAACTCTTGGATTAGCAATATCATTGTTTAATTGTAAGATTCTGGAAAAATATAACCAGAAGCTATATTT TGCAGGATGGAAAATATCTTATCTTCAGCATGTCTGATTGAAAATACCTCCCAAGTGCATATTTAGTTTTATAATTAAAA TGAATTCAAAAGCAAAAATGCCAATTGATCTTATTTACTTGTTGGGGATTTAGGAACAATGTTAATTATTTGGTTTTTTC TAACAAACTTGCGCCTTGTTGCGTTCTTCTACTACAGTTGTTAAAGATTTGAAGTATGCCGATTCTCATGAGTGGGTGAA AGTTGATGGAAATTCTGCAACTGTTGGCATAACTGATCATGCCCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTGC CAGAAGTGGGGACAGAAGTAACACAAGGAGGTGGTTTTGGCGCAGTTGAAAGTGTGAAGGCAACTAGCGATATCAACTCT CCTGTTTCAGGAAAAGTGGTTGAAGTTAATGAGGAGCTTAACAGCTCTCCCGCTAAGGTGAGTTCTGTTGCCAAATTCTT TATACTTTTTTTACATGAAACTCCGCCTATGTTGTGGCATAGCCAGTCATAAGCCTGGATAAATGTCAAAGTTGTGTTAG ACCTGTGACAACCAATGTAGAACTGGCTGTATCATTAAATATGGATCTTTGTTACTTTTGTTACATGAAAGACAATATCT GTAAGTTGAATCCTGATAATTTGTGCATTTTAATCTCTCTAGTTTCTTTTTAAACTCTAAATTTTGGAAGTCTATGCTTT TGTAATGCTGAAGGATTTCAATGAACTTTTAATATGGCCTTTTTTTCTGTCAGATTTTTTTTTATCAGCTAAGTGTTTTT ATGTTTCTTTACATGTAGGTCAACTCAAGCCCTTATGAAGATGGATGGATAATTAAAGTAGAATTGAGTGACAGCAGTGA ACTAAGCAACTTGATGGATTCAGAACAATACTCCAAATTCTGTGAAGAAGAAGATTCCAAGCATTGA
CDS sequence (LotjaGi4g1v0083600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGCAGACAATTGTGGGCTTCAAGAGCTGCGTCGTACCTGAGGATCTCTGTCTTCAACAGAGCCTTCTCCAGTGT TGTTAAAGATTTGAAGTATGCCGATTCTCATGAGTGGGTGAAAGTTGATGGAAATTCTGCAACTGTTGGCATAACTGATC ATGCCCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTGCCAGAAGTGGGGACAGAAGTAACACAAGGAGGTGGTTTT GGCGCAGTTGAAAGTGTGAAGGCAACTAGCGATATCAACTCTCCTGTTTCAGGAAAAGTGGTTGAAGTTAATGAGGAGCT TAACAGCTCTCCCGCTAAGGTCAACTCAAGCCCTTATGAAGATGGATGGATAATTAAAGTAGAATTGAGTGACAGCAGTG AACTAAGCAACTTGATGGATTCAGAACAATACTCCAAATTCTGTGAAGAAGAAGATTCCAAGCATTGA
Protein sequence (LotjaGi4g1v0083600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACRQLWASRAASYLRISVFNRAFSSVVKDLKYADSHEWVKVDGNSATVGITDHAQDHLGDVVYVELPEVGTEVTQGGGF GAVESVKATSDINSPVSGKVVEVNEELNSSPAKVNSSPYEDGWIIKVELSDSSELSNLMDSEQYSKFCEEEDSKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 152 | 130 | 1.2E-67 | – | |
| PANTHER | 23 | 152 | 130 | 1.2E-67 | ||
| Gene3D | 25 | 155 | 131 | 7.9E-58 | – | |
| SUPERFAMILY | 27 | 150 | 124 | 2.22E-46 | ||
| Hamap | 28 | 149 | 122 | 39.253 | ||
| TIGRFAM | 28 | 152 | 125 | 6.4E-51 | ||
| Pfam | 31 | 150 | 120 | 3.8E-48 | ||
| CDD | 33 | 127 | 95 | 1.68345E-51 | ||
| ProSiteProfiles | 46 | 128 | 83 | 29.959 | ||
| ProSitePatterns | 71 | 100 | 30 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Glycine cleavage complex | A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T. | ||
| Biological process | Glycine decarboxylation via glycine cleavage system | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. |
Expression pattern of LotjaGi4g1v0083600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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