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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0086500 |
| Transcript ID | LotjaGi4g1v0086500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | N utilization substance protein B like; TAIR: AT4G26370.1 antitermination NusB domain-containing protein; Swiss-Prot: sp|Q8DKS0|NUSB_THEEB N utilization substance protein B homolog; TrEMBL-Plants: tr|I3SVI4|I3SVI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0086500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11417439..11426129) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGAGTATAAGATAAGAATGTTAGAATCCAGATATTTGCAAACTGCAGTCTGCAATGCAATTATTATTATCTTGTACA GTTGCAATGGATGGAGCCTGTGTTCCTCTCCCTTCACCTTCATCTTTTGCAACTCCTTCTAAATGTTTTCCCCTTCCCTC TTCATTAGTAAACCATAACCGTGACTTCTTCCTTGCAAAACCCCAAAACAAGACCCTCTTCACTCGGTGCTCCGTCGCCA GCTCCGCCGTCGCCGTCGACCGAGACGAAGCTTCCGGTTTAGGAAAACCCGACACGGCTGGTTTACCCAAAGTCGATAAA ACCGGCCGGTTTTGCAGTCCCAGAGCCGCCAGAGAACTTGCCCTGTAATTGCTGTGAACACATTGCGTTGCTTTTTACAC CACCGCGTGGTTTCTCTTACCATGTTATAACTGTGGGATTTGTTTGTGTTTTGTGTATGTGCAGGTCTATAATTTACGCT TCGTGCTTAGAGGGTTTGGACCCGGTTCGCCTGTTTGAGAAACGGTTGAATGAGCGGCGAGGTAAGTAATAGTTCTTTTT GCGTTGAGAATTCAAGTGTGAGTTGGAGTCCCACATTGGTTAAGGGCTCGTTTGGCATGCCGTATTAGGCATGATAGTAT AAGCTTATACAATACATTATGAGTTTATCCATTGTTTGGTGATGACATTGTATTGTATAAGCTTATCCATCAAAGTCCCC TTATACGTTAAAATGACGTATTATTTAATCCATCATGTGAGTGATGGATAAGGCATGATAAGGTTGTGACGTATAAGTCA CCATCACCACCACCCTCTATTGCTGCCAACTTACACCACCATTGGCACCACCACCACCACCACCACCATCCGATCACCGC CGCCGCCGCCACCACCGCCCTACCGTCACCACTGGTGTTGCCACCGCCGCCGCCGCCGCCCTACCGCCACCACCACCATA ATCGCCGCCACCACAACCCTATCGCCACCACCACCATAATCGCCGCCACCACCGACACCACAACCACCACCCTATCGCCA CCACCACCACCACCACCATTGCCTCCACCCTCCACCGTCACCACCACCCTACTAAGCCGCCACCGCCTTACTACCACCAC CACACCCTATCGTCGCCAACACCACAACCACCATCGCTGCCACCACCGCCACCACCGATGTTACCGCCACCACCACCGCC GCCCCCCTACCGCCACCACAACCACCACCACCACCATTGCCTCCACCCTCCACTGTAGCCGCCACCGCCTTACCACCACC ACCACCACCCTATCATCACCACCCCCACAACCACCATCGCTGCCACCACCACCACCAACCTATCTCCACTGTCACCACCA CCGCCACCAACACCAACCTACCACCATTGCCACCACCACCACCAACCTACCACTACTTCCATCACCACCGCCACCACCGT TATAATCACCTCCATATTTGATTTTTATTTTATATCATTATTCAATACTTCATTAAACATAAAATTGCATTAATTTAAAC GATATGGTAAATTATACAGTGTATGTCCAAACGCTGGATAGTATAAGAAAGTTATCAGGGCTTATACTATCAGGCCTAAT ACTATCAGGTCTTATACTATCAGGTCTTATACTATACGTCGCACCAAACGGGCTCTAAGTATGGGTGAGGAGGAGACTGT ATAAGAGATGCGACTCATAAACCTAATACCTTTAAGGTTTTGGGTTAAAATGTGGTGTCGATATGTGTTTTGCGGGCTCC CCTGTCTCCCCTTAACAAATTGATTGCAATTTTGTTGTTGTTGTTGTTGGTTTTTCAGAAGCTGGGTATCAATTTGACCA GAGGAAATTGTTGGAGTATAATCCTATGAGTTTTGCGGGACCACCTGTTACTGTTCAATCGGAAGAAGAAGCAAATGAAC TTCTGCGGAACATTGAAAAGGAGTCTGATCTTGGTAATAATTGATCCACAATCCCTTACCTTTTTTTTCTTCATTTTTAG GTCACACTTGGAAAAATACTATTTATTTTTTATTTGAATCTTGTCCCAATATATAAAAAAGAAATGACAATGATGGGAGA GTATGTCCCGAATGATAGCTCAAGTGGTAAGAGCTAGGGGACATACGAGTTGGGTGTGAGAGGTTCAGGGATCAATCCCT GGAGGGTGCAATTTATCTTTCCGATGTACAAAAAAAAATGACTAGAGAGTATAATTAACTTGCAATTGGTGTGAAGTTTA TTTTTTCATTCATTTCATGCTAGATCAGCTTTAATAGTTACATGATTTATAATTAAGTTTAACATGTACTTTCTATTATG GTAAAGAACTGTTAGATGTCAGTGTATCGATCGCGTATATACATTAAATCCATAACTAAACTGGAGTTCCCTCTGTTTAA TCTTGTATCCCTGCTACAGTTTCTAAATTACATTAAGTTGTAGGCTTGTAGCGTGTTCACATCAATAAGACATAGGAACA AGGTTTTAGATTGTGGATGCATTGCAGCTGATGCTGGCCAATGCGGTCTACAATTACTGCCTGATGTGATCGGTCTTCTA TTTAAAACCTTGCCTAGTAATGCAGCATCAAACTTCTTACTTCAGTAATAATGAGAAGTTGAGAATAGAAATGTATAATA ACTAATAAGTTTCACCTTTATCACTTTAGAAGTTTGGAGATTTAGGGTTTTGCAATATGATATTGTAGGTTGCCTTTGAA ACTGTACATATATGTTAGACATCAATTTTTTTCTCTAAAAAATGGTTTTATTATGGCCCGCATATTTTTGACAGATTAAT TTTATTTTAATCGTTGATGAAAACTTTTACACTTATTGAATTATTACTTGGGCATCTTAAATTTGGTGCAACCTTCCTTT TTGTGTTACATTGTTTCGCATGACATGAGTTTATTCGTTGTTTGTAGTCACTCATGTTCACGGAAACCATTAACTTGGTT CTGAACTATTTATTATCTGCTCAGTTGTCAATTTTCTTTCAATACTCCCATCTCTAAACTGTTTTAATATGTTATGTTCT GCATGCCAGAAGCGGAAATCCTTTCAGCTCCTCCAAAGCTGGTATATAACAAACTTATATTGAGGTAAATGTCGACCTTT CACTCATAATGCATACATCAAACTTCACTGGTACCTGAAGCTTGTCATTTCCTGCCCCTTTACCCCCCACCCCCACCAAA AATTGTTTTTTGTAAGATTGAGTACTCTTGCGTGTGTAGAAGTTTGTTAGGAGGTTAATAATCTAGCCCAATGACTTATC TGCAGGTTCACAAGGAAACTATTAGTTGCAGTCAGGGATAGTTGGGACAGTCATGTCCTTGTTATTAACAAAGTTGTCCC ACCAACTTGGAAGGTATGGCAAAAGCTTTTGCAATCAATATCTTTTCTCGCTATTGCAAATTCATGCAAGTGAGGGACAT GATTTTTTCTTATAATTGTAAAATTTGAATACTTCTATCTAATTAATTTTGCTAAACCTGTTCAATTTATTGATTAATGT ACCATGTTGAACTTCTCTAACAAAACGAGCAAATAGATAAAGTTAATGCTTTATGTTATTTATTCCCTGCTATCTTTATC ATCCTCAGGAACAAAGCGGTAGTTTAACATTTTAAACTGTTTATAAATGCCTATATGAGTTGAGAAATGAGAAGACAACA ATATCATGTGAAAATAGTTCAACCCAAACTTAACAGCTGAGAGGGGCATGGCTGCTTGTTATGCTACTTCCTTTCCATAC TCTTTCCATTGACAACAACAAAGCTATTTCTCAAAGTTCAACATGGTGTCATAGCTTTTACTTGATGCATTTCATGGCTC CCTCTCAAAATCGTTTTGCTGTGCTAGAAAATCGTGCTTAATCTTCGGCCGTTAACCTTTTTGTATCAGAGCACCATCAA ATTTGATGAGAACTTGAGAAGAATTTCATCCCTAGGAAGCAGCAGATTGAACAAAGATCTTCTTGGCACTCCAGAAAATT TTGGTCAATTCTTCAATTCCAGCTAATTTCCTCCCTCATGATGATTAAGATCATGGCAACATCAATCCAGCTTACACCAA ATAGGAGCAGCAAGATTTGCTGCTATTCACATGGTTTTTGTCTTTTTTGTCTGATTGGTAGGTAACTGTTAGTGAGGGTT AGTTAGCATAAATAACAGTTCGTAGTTAGTTAGTTAGTAGTTACCAGTGAGGATAGTTAGTTGTGGTAATATAAATAAAG GATAGTAGTGTTAGTGGGGGTCACCAAGATTATAATTGGGCAATTAGATGAGAGTTGAGCCTCTCAAAAGTCTCAAAAAC CTTTTATTACTTTTAGCTATATTTTCCTAAGTTCTGTCTACATTTAGGGGTTATGGTTCTTCGTCAATAATACATCTAGT TTCTTCAATTCTTTCTTTTCATTGGTACCAATCCTATCAATTCATGGTGGTAATAGCTGGTCTGGTCGTTCTTGCGGTGG TCGAGGTGGTGGCCGATCCTAAGTCCAGTGCCATATCTGCTTTCAATGTGATCATAATGCAAGCATTTTCTGCTATCGAG CTCTTGAGTAGTAGTACTCTTATCCAGGGTACTGGTATTTACTTATGCCTCACAGGCCCATGGCTCGACCACCACAAGGT AATCCAGCTCCTCAGCTTCTTCAACGAGCCCTTTCATCAGCTGGACCACCCCGTCCTTCCTCCTCTAGTCAATCACATGT TCTCAGTTTTAGTTCCTTGACTTGGGAGCCACTCATCATGTCACTGATGATGCAAGCAAAACGATAGAGACTATGTCGCT AGTAGGATTTGGCTGGACTCTCATTGTGAATGGCCAGGGTTTGTCCATTACATCTGCTGGTTTCTCCACCTTTCCCCAAT CTTACAAACCACACACCTTTTTGATTCGTAAGAACCTATTATTAGTGCCCTCTATTACCAAAAATGTAGTTATAAAGATA ATTCTGTGTTTTCTGAATTTCATCCCACATATTACCTTGTCAAATCTCAGGCAACTTCTGTGTTACTAAGAGGTGCTCTT GGTCCAGGTGGGTTTTATTCCTTTTGAAATTTGTTGTCTCATGGTGTAGTTTCATCTAAAGTCATAGATGTTGCTTTACC TTCTCTTAATTATACTTCAATTTCTACCAAACTCTGAAATTCTTTCATCAACCTTTAGTGCCAAGCTGATGAGAAAACGT TACTTGCGCAGAAGGAGAAATTCGATTCTCCATTGATGAGAAAGGATTTTGTGCAGAAGCTATGGTAGCTGGATCGATTC AAGCTCTTGATACCATGTTAGAATAGTAAAGTGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTAGGAATT TTGTATTTTGTATTGAATTGATCTTATCTTATATATAGAGAGATGAACCAAATCTTACAAAGGAAGCTAAGTACAAACTC TAACTAACATTGCAGCTGACACTGACAACTATAATTGATAGCTGTAATTAACTAACTAACAGTTGTACCATCAGCATATG CTATACAATAGCATCAGCATGTGCTATACAATCAGCATATAATATTAAATGCTCTAATACACACCAACAAGTTGACTGCA CTATTAGTTGCCATTCAATTTAGAAATCCTTGCATATTATGAAGCACACCACCATTATTTACTTTGGTAGTTTCTCAAAT TATCTTTATCTGTCATCTTCATATTTATTTTTATCATGGATTGCAATGCACACAGTAGATAGCTTTGTATTTTTAATGGT TTAATAAATCTTTTGATGCTGTGTTTATTGCATCTGCTTTTGTGATAGTCATAGAGATTTCCAACTTTAGCTTCTAATTT CTATCCATTTTTGTGATTTGGAAAATTTGGTAATTTCTAGTCTGGCTTTTAACTGTTCATTTCTGTCCTGTCCCTTGCAT ATTTTAGATATCACTTTGTTTTCTGATGCTCATACATCTTGCGTCTGTTGGTAAATTTCAGGATGAACCAGCAGGGAAGA TTTTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAAATGACAAAGCTAGAAACAATACACCAAATTGTCATTAATGAG GTACATCTTAATTTTCTGTAATTGTTATTTTTCTTTTTAGTGTGGGAGACTACCATTTTACTTTGAAATATGATAAATTC ATTAACTTCCCTTTATTTGTGCTATTTGTTCACAGGAACTTATATTGTGTTTTAAAACTAGATAATCGAAGGAAATGTTA AAACGTGGTGCTATTTATGAAACCAGAGTATAAACTATATAAGTCTAAACTACAAAGCATGCTCCTTAAGTCGTATTTGT TTTATATTCCACCACAAACCCATGTTCAAAAATTTCCCAGAAGGTCCTTTATTTTTTACGATTTGGTAGAATGAAAAAGT TCATGTTAAAATAATTGATTCATGTTTAGGAATGATATTTTTAAAGGGAATATTGTTACCCCACTTCTGGATTTGATAAG ATGCTTCATCAACTTCCTAGAACGAGTATTAGTTAGGATAAAACCGAAAGCAAAAGCAAAACTGTTAGACACACTCAATT AGTGAAGCGGGTTAATTAGTGGGTGGGTTAGTGTGTGAGGCATGTTGCCTATAAATAGAGTTAAGGGTTAGAATTGGCAT CTTTTGGGATCATTTGGGGTTTGGGACTTAGGGAGAGTGGCTGAGTCTCTCCAATTGTTCAGCAACCAACGATATCCAGT TCCTATCAAATACCCAAAGAGTTTGACCCTTGAATTTGTTTCTCCATACCAAACTTCCCAATTCTCATTCACAACCACAA TCTCTAAATATCCTGTTCACGTGACTGCTTAGAATAACTTCATTGTTCTTCCTTCAAACAGGATTCCCTGGCTAACCATA ACTGGCTGAAAAGCATTTATTAAAAAGCAAATAACGGCTTTATCCTCTTCAATGAAGTGTTTTTTAGAAGAATTTAACCA AGCATGCTGTTATTTGTTGGGGATGCTTTTGTTGTGTGCTGACAACATGCTACTGAAAGTTATAATAAGCTACATTTCAA TAAATTTTGAATAATATGCCACATCAATTAATACTGAAATGGTGGTACTGAAGGGACTGGGTATGATACTTGCACAAACA TGCTCATGCTTTTAACATACTATCTGCGAGCCATTGATTAATACCATGGTTCATGGTCGAACTCTATCTTCTTTTGACTG GTTAAGATGGTGCACATATCTACCTCACATAGTTTTTGCAAATATCTTTGCCTCAGAGGCAAACTATTATACCTTTTGAA AAAATTGACATGATTACAAATGTACTGGCCAAATTGTCACCCCGTTTAACAGTAGCTCTGGATTTATTTTTTATTTTTTT TATATTTGTATGTTTCCCCCATTGATATGATTTTACTAACCACTTTTTGTTTTTCTTACTTTTTATACCCAGTTTACGCT AGTTATCTCTTTCTTCTTTTTCTATTAGATCACCTGATACAGATATGTTTTTCCTTCTCTATCTCTCACTTTTCTCAGTG TATAGGCTCCTGGAATGTCAAAATATCATTTTCATTCTACTAATAATAACTGTAAAAATAGCCTTTTGTTTTCAAGCTTT TATGGTAGAGATTAGAGAAGGTCAAAGTTGACAGTTTATGTTATTATTTATGAAAAATATATTAACTGAAAACTAGTTCA GTAAACAAAGCAAACACTCCCTTAGCTTCTGATTTTAATTTAGTCTTTGGCATGAGGAGGGTGAGGGATCTTTATATATT TTATGGGTTGATCTTACTGCATTAGCCTGTAGTAGTATGATCATTGAATTGTATCTCATGTAAAATCAAAGAACATGAAA AACTCATATTGTAAATGTTTGTTTTGAAGGCGGTGGATCTCGCTAAACGGTACTGTGATGGAGCATCCTCTCGAATCATT AATGGCTGTCTACGCACATTTTATAGAGATACAGAGAAGGCATCAGATAGATAATGAGTTAATGGGATCTCTTTTCTATA TTGTCTGTTCATTGTTGCCTTGGGAATGTTGAGAATATTGACCTGGATTTCAGGAATATCACCTATATGTAGCTTTATGG AACCATAATAGGTAGCTAGGTACAAGGGGCAAGGTTTGGAGTAGGAAGGAATGATTGAATCTGATACCGTTCCCTTAAGG TTTAATTGCACTTTTGGTCTCTCTTTAATAGTAATTGTGCGATTTTGGGTTCCCCATTGTTAAATTGAGCTATTATTTTT CACGTGTTGCTATCAGATGTTCGATTTCTAAGACAAAATGATGGCAAAATATTGTGACATCAGTTTTTGTTCACTTAATT AGGGTACGTGTGGTCAGAGACATGAAAAGAGAAGAGATGGAGGGAGAACTTGAAGGAGGAATGCAGACGGAGACTGTGTC TCCACTGCCAAGCTCCTTGCTTACGCCTAATAAAGTTGACTCCTTGAAATCATCAACCTCTTATGCCAAATCCCAAACAA GGGACGTCGTTTTCCTGGAACTCAATCTACTAAGACAATTTTCTCACGACTTGAAACATGTTCAATGAAATGCCACACAG AACCACCGTGTCTTGGACATGCAATAAACAACCATGGAGGTACAAATAGAGGTTGAGAGAGAAAGGAAACACAAGGAGAA TGAAAAGTTGACTCAACATCATTAGAAGGATTTACCTTGTGATTGAATTGA
CDS sequence (LotjaGi4g1v0086500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTATTATTATCTTGTACAGTTGCAATGGATGGAGCCTGTGTTCCTCTCCCTTCACCTTCATCTTTTGCAACTCC TTCTAAATGTTTTCCCCTTCCCTCTTCATTAGTAAACCATAACCGTGACTTCTTCCTTGCAAAACCCCAAAACAAGACCC TCTTCACTCGGTGCTCCGTCGCCAGCTCCGCCGTCGCCGTCGACCGAGACGAAGCTTCCGGTTTAGGAAAACCCGACACG GCTGGTTTACCCAAAGTCGATAAAACCGGCCGGTTTTGCAGTCCCAGAGCCGCCAGAGAACTTGCCCTGTCTATAATTTA CGCTTCGTGCTTAGAGGGTTTGGACCCGGTTCGCCTGTTTGAGAAACGGTTGAATGAGCGGCGAGAAGCTGGGTATCAAT TTGACCAGAGGAAATTGTTGGAGTATAATCCTATGAGTTTTGCGGGACCACCTGTTACTGTTCAATCGGAAGAAGAAGCA AATGAACTTCTGCGGAACATTGAAAAGGAGTCTGATCTTGAAGCGGAAATCCTTTCAGCTCCTCCAAAGCTGGTATATAA CAAACTTATATTGAGGTTCACAAGGAAACTATTAGTTGCAGTCAGGGATAGTTGGGACAGTCATGTCCTTGTTATTAACA AAGTTGTCCCACCAACTTGGAAGGATGAACCAGCAGGGAAGATTTTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAA ATGACAAAGCTAGAAACAATACACCAAATTGTCATTAATGAGGCGGTGGATCTCGCTAAACGGTACTGTGATGGAGCATC CTCTCGAATCATTAATGGCTGTCTACGCACATTTTATAGAGATACAGAGAAGGCATCAGATAGATAA
Protein sequence (LotjaGi4g1v0086500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLLLSCTVAMDGACVPLPSPSSFATPSKCFPLPSSLVNHNRDFFLAKPQNKTLFTRCSVASSAVAVDRDEASGLGKPDT AGLPKVDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRLNERREAGYQFDQRKLLEYNPMSFAGPPVTVQSEEEA NELLRNIEKESDLEAEILSAPPKLVYNKLILRFTRKLLVAVRDSWDSHVLVINKVVPPTWKDEPAGKILELSILHLAMSE MTKLETIHQIVINEAVDLAKRYCDGASSRIINGCLRTFYRDTEKASDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 17 | 7 | - | – | |
| Phobius | 18 | 288 | 271 | - | – | |
| PANTHER | 48 | 284 | 237 | 7.8E-89 | ||
| SUPERFAMILY | 93 | 283 | 191 | 7.12E-19 | ||
| Gene3D | 153 | 288 | 136 | 2.8E-14 | ||
| Pfam | 210 | 280 | 71 | 2.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | DNA-templated transcription, termination | The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0086500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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