Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0090500 |
| Transcript ID | LotjaGi4g1v0090500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT1G26760.1 SET domain protein 35; Swiss-Prot: sp|A5DQN2|SET5_PICGU Potential protein lysine methyltransferase SET5; TrEMBL-Plants: tr|G7JG98|G7JG98_MEDTR TPR domain protein; Found in the gene: LotjaGi4g1v0090500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11980353..11982987) extracted from Lotus japonicus Gifu genome v1.2.
GTACTTCGAGCTCCTTTCCTAGCAAGCCAATCCGCTACTCCGTTACCCTCTCGAGGAATCCAGACTACGCTCACCCTCAA ACTCTAGGACAACAACTCCAAAATTAGCCGCAACACTAGAGCTAGCCTCCGCATGCTCAAGAACATCAACAAGATCTTTG CAATCCGATTCACAAATGTCTTACCGGTGACCCCAATTCCAAGCAAGGTCAAGGTCATCCCAGATCGTTCTCGCCTCCGC CAAAAAAAAAAGGGATAAAAAGAAAATGTGGAAAAATCTTTATTATCCCATTGGTTGTGCTTCTCAACTCAAATTAGGGA AGTTATGCATAATAAAAGTTAAAATAAATGCAACCGTTACAGATTTTAAAATTGGAAGAAGCTGCATTTGAAATACAACA TTGGCAGTGGAAACAACAACAAAGGTAGAGAAAGAAATGACAGAAGAAGAGGAGTATCTGCAACTGCAACACCTCAGATC CAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGAAGGATTCAATCGATGCATATACCCACTTCATCAACCTCTGCACCC ACCAAATCCAAATCTCCCATTCTCACCCTGAAAAGCTTCGCAAATCCCTCTGCATTGCCCTCTGCAACCGCGCCGAAGCG AGCTCCAGGTTGCGCGATTTCCACTGCGCATTGCAAGATTGTGACCATGCTCTCAATCTCGATCCCACTCACTTCAAGAC CTTGGTCTGCAAAGGTAAGATCTTGCTCGGTCTCAACAGGTACTCAATGGCTCTGGAATGCTTCAGAATCGCTCTGCTTG ACCCTCAGGCTGCTGGGAACTCTGAGACCCTAAATGGGTATTTTCAGAAATGTAAAAAGTTTGAATTTTTGTCAAGAACA GGGTCTATTGATCTCTCAGATTGGGTTGCAAATGGGTTCCCGGGAAAGGCGCCGGAGCTCGCGGAACACATTGGTGCTGT GGAGATCAAGAAATCGGAGATCAGCGGGCGCGGTCTGTTCGCGACGAAGAATATTGATGCCGGGTCGTTGATCTTGGTCA CCAAGGCTATAGCAATTGAGAGAAGTTTGTTGAATGAAGGTAAAGATTTGAGTGAGGATGCACAATTGGTAATTTGGAAG AATTTTGTTGATAAGGTTTCGGAGTTTATCAGGAAATGTCACAAGACTAGGAGTTTGATTGGTAGGTTGTCAATTGGGGA GAATGAGGATGGGCTTGAAGTGCCTGATGTGGATCTCTTTAGGCCTCAGAATGTGGAGGATGTGGAATCAATTGAGGAGA TTGATATGGTTAAGCTACTTGCTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCGGCTAATATTTTGAGAAAG CAGAATGATTGTTATGGTGTTGGGTTGTGGTTGCTGCCTGCTTTCATCAATCATTCATGTTGTCCTAATGCAAGGAGGTT GCATGTGGGGGATTATCTGATTGTTCATGCTTCCAAAGATTTGAAAGCTGGTGAAGAGATCACTTTTGCTTATCTTGATC CTTTGTCTCCCTTGAACAAGAGGAAAGAGATGTCAGTGACCTGGGGAATACATTGCAAGTGTAGGAGATGCAAATTTGAA GGGGAAATCTTCTCCAAACAAGAGATGAAAGAGATTGAGATTGGTGTTGAAAGAGGGTTGTTGGATGTGGGTGGTGTTGT GTATAAACTAGAGGATCAGATGAAGAGGTGGAAGGTGAGGGGAAAAGAGAAAGGGTTTTTGAGGGCATCTTTTTGGTCTG CATATTCAGAGGCTTATAGGTCTGAGAGGTCCATGAAGAGATGGGGGAGGAGGATTCCGGCGCTCGATGCGGTGGTTGAT AGTGTCACTGATGTAGTTGGGGGTGATCACAGGTTGCTCAGGATACTGGTGGAGGAGATGAAGAAAAATGGTGGTGGCCA TGTGGAGATGGAAAAAGTCTTCAAGTTGGCCAAAGATGTGTATGGAAAGGTAGTGAAAAAACAAGCAATGAGGAAAATTC TTGAACTCTGCATTGCTGATTGATTGTTCGTTTGAATGAATGAATAAATTTATATTTCATTTTCTGCAACACTTCCGGCA AAGTCTTAAAAGTTAAAACCAAACACTTCCTGCAGGGGGGACTGTGTGTGAAGTTGGGTCATATGAAAGAACTCCAGAGA AGATTTTAAGTGTCTCCTTTTACCTTCTGTTTTTGATCCCCTATGTTTTTCTACAAGAAGATTTAATGTATAGATAGGAT GACCAAAAGAAAGAAACCAAGGCAAACAGAATGGAGCCAGGCAAAATGGTAGCAGTAGCTTTAATTTTTCAGTTTCTCTA CTTACTTATTGTTGTTGCTCTTATATATGAGAAGCCAATTCAGGAGGAGAGGAAATTCAATCTGCCATGTTTCATCAGTC ATTGTATCATGCATGCATGTATATGATTATGATGAGGTTTTAATTTTTGATATTCTTTAATCTTTATCATGGTAATTGAA ATGGTTTGTAATTGCAATTGAAAGCAGAGAGTGTAAATTCTTACAATTTGGTTTCTGTCATATTTGCAGAGTTAAATCTC CTCTTCTGTTGAAACAAGGCTTAATTGCAACTTTGGTCCTCGACGTTTACCAATGCCACGATTTTGGTCCCCCAC
CDS sequence (LotjaGi4g1v0090500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAGAAGAGGAGTATCTGCAACTGCAACACCTCAGATCCAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGAA GGATTCAATCGATGCATATACCCACTTCATCAACCTCTGCACCCACCAAATCCAAATCTCCCATTCTCACCCTGAAAAGC TTCGCAAATCCCTCTGCATTGCCCTCTGCAACCGCGCCGAAGCGAGCTCCAGGTTGCGCGATTTCCACTGCGCATTGCAA GATTGTGACCATGCTCTCAATCTCGATCCCACTCACTTCAAGACCTTGGTCTGCAAAGGTAAGATCTTGCTCGGTCTCAA CAGGTACTCAATGGCTCTGGAATGCTTCAGAATCGCTCTGCTTGACCCTCAGGCTGCTGGGAACTCTGAGACCCTAAATG GGTATTTTCAGAAATGTAAAAAGTTTGAATTTTTGTCAAGAACAGGGTCTATTGATCTCTCAGATTGGGTTGCAAATGGG TTCCCGGGAAAGGCGCCGGAGCTCGCGGAACACATTGGTGCTGTGGAGATCAAGAAATCGGAGATCAGCGGGCGCGGTCT GTTCGCGACGAAGAATATTGATGCCGGGTCGTTGATCTTGGTCACCAAGGCTATAGCAATTGAGAGAAGTTTGTTGAATG AAGGTAAAGATTTGAGTGAGGATGCACAATTGGTAATTTGGAAGAATTTTGTTGATAAGGTTTCGGAGTTTATCAGGAAA TGTCACAAGACTAGGAGTTTGATTGGTAGGTTGTCAATTGGGGAGAATGAGGATGGGCTTGAAGTGCCTGATGTGGATCT CTTTAGGCCTCAGAATGTGGAGGATGTGGAATCAATTGAGGAGATTGATATGGTTAAGCTACTTGCTATATTGGATGTGA ATTCTCTCACTGAGGATGCTGTTTCGGCTAATATTTTGAGAAAGCAGAATGATTGTTATGGTGTTGGGTTGTGGTTGCTG CCTGCTTTCATCAATCATTCATGTTGTCCTAATGCAAGGAGGTTGCATGTGGGGGATTATCTGATTGTTCATGCTTCCAA AGATTTGAAAGCTGGTGAAGAGATCACTTTTGCTTATCTTGATCCTTTGTCTCCCTTGAACAAGAGGAAAGAGATGTCAG TGACCTGGGGAATACATTGCAAGTGTAGGAGATGCAAATTTGAAGGGGAAATCTTCTCCAAACAAGAGATGAAAGAGATT GAGATTGGTGTTGAAAGAGGGTTGTTGGATGTGGGTGGTGTTGTGTATAAACTAGAGGATCAGATGAAGAGGTGGAAGGT GAGGGGAAAAGAGAAAGGGTTTTTGAGGGCATCTTTTTGGTCTGCATATTCAGAGGCTTATAGGTCTGAGAGGTCCATGA AGAGATGGGGGAGGAGGATTCCGGCGCTCGATGCGGTGGTTGATAGTGTCACTGATGTAGTTGGGGGTGATCACAGGTTG CTCAGGATACTGGTGGAGGAGATGAAGAAAAATGGTGGTGGCCATGTGGAGATGGAAAAAGTCTTCAAGTTGGCCAAAGA TGTGTATGGAAAGGTAGTGAAAAAACAAGCAATGAGGAAAATTCTTGAACTCTGCATTGCTGATTGA
Protein sequence (LotjaGi4g1v0090500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEEEEYLQLQHLRSKATELFIREEWKDSIDAYTHFINLCTHQIQISHSHPEKLRKSLCIALCNRAEASSRLRDFHCALQ DCDHALNLDPTHFKTLVCKGKILLGLNRYSMALECFRIALLDPQAAGNSETLNGYFQKCKKFEFLSRTGSIDLSDWVANG FPGKAPELAEHIGAVEIKKSEISGRGLFATKNIDAGSLILVTKAIAIERSLLNEGKDLSEDAQLVIWKNFVDKVSEFIRK CHKTRSLIGRLSIGENEDGLEVPDVDLFRPQNVEDVESIEEIDMVKLLAILDVNSLTEDAVSANILRKQNDCYGVGLWLL PAFINHSCCPNARRLHVGDYLIVHASKDLKAGEEITFAYLDPLSPLNKRKEMSVTWGIHCKCRRCKFEGEIFSKQEMKEI EIGVERGLLDVGGVVYKLEDQMKRWKVRGKEKGFLRASFWSAYSEAYRSERSMKRWGRRIPALDAVVDSVTDVVGGDHRL LRILVEEMKKNGGGHVEMEKVFKLAKDVYGKVVKKQAMRKILELCIAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 141 | 141 | 2.2E-21 | ||
| PANTHER | 9 | 522 | 514 | 6.0E-157 | – | |
| SUPERFAMILY | 12 | 120 | 109 | 5.22E-19 | ||
| SMART | 59 | 92 | 34 | 0.021 | ||
| ProSiteProfiles | 59 | 126 | 68 | 8.89 | ||
| SMART | 93 | 125 | 33 | 20.0 | ||
| SMART | 173 | 366 | 194 | 1.1E-9 | ||
| Gene3D | 173 | 254 | 82 | 7.8E-6 | – | |
| ProSiteProfiles | 173 | 360 | 188 | 13.302 | ||
| SUPERFAMILY | 174 | 386 | 213 | 4.45E-25 | – | |
| Pfam | 184 | 359 | 176 | 1.4E-13 | ||
| Gene3D | 269 | 390 | 122 | 1.3E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0090500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…