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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0097200 |
| Transcript ID | LotjaGi4g1v0097200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A0S3R594|A0A0S3R594_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13153384..13157564) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAAAACCACCACAAATTTGTTCGGTGACATAAGTTGTATCAGCTGCTCCTTATCCAACCAGCAGTAACAGTGTGGAA GCTCAAACAAAAACCCTGCAACTAAGACCTCAAAACCCTTCCATGGCTTCAACTCTCACATACCAACCATGTTAGAATTT TCTTCTCCCCACACACAAATGGAGCTTTCTTCTTCCTTTCTACTTCCCCATAAACCACTTCACTCATCATCCTATTTACA CAACCCACTTCGAATCACCACAAAAACCCGACACCCCACCACCCAAATCCTCCGTATTTCCGCGGTGGCCATCGACCCGC CGCCGCAGGAGCTTCCTCAGAACAGTCCCCGCCGCCTCCTGCAGGAGCTCGCCGAACGCAAGAGACCCTCTCCGAAAAGA AGAGCACCGCCGAGAAGGTTCGTCCTCACTCCTCCGGTTAACGACAAGAAACTCGCCAACAGGCTCCTGAATAGCCCACA ACTGACGCTGAACAATTTCCCTGTGCTGAGTTCATGCCTCCCTTACGCGAAGCTCAATGATAACGACAATGCGTGGATGG AGGAGCATTTGATGGAAGCGAAGCAGGCGTTGGGGTACCCTTTGGAGCCGTCGGAGGAGGTGATGATGGGGGAGGGGAAT CCGGCGAAGATGCTCGATACGCTGCTGTATTTGGCATTTCAGCACCCCAAGTGTGAGAGGTCGAGGGCGAGGCACGTGAG GTGTGCGCACTCGAGGTTGGTGTTTCTGGGGCAGTATGTGTTGGAGCTGGCGTTGGCGGAGTTTTTCTTGCAGAGGTACC CGAGGGAGTCGCCCGGACCGATGAGGGAGCGGGTTTTTGGGTTGATTGGGAAGAGGAGCTTGCCCATGTGGATTAAAGCT GCGAGTTTGCAGAATTTGATATTCCCCAATGTTAATATGGATAAGTTGGTTAGGAAGGACAGGGAGCCGATCGTAAAGTA AGCTCTACTTCCATATGGTGTTACTTGATTGTTTTTAGGGGGATGAATAGTATCATTGTAGTCTAGTAGTGCTGTTCCTA CTGTGAAGTTTGTTTACTATACTTGAAGGTGTGATTATTAGTTACACTTACAGTTGTGGTTATATCAAGATTCTTGTTAC TATCGTAAACAAATGCTTCTGATGTGGTCACACAAGGTAGTTGTAGACTTGTATAGACATCTAAAATCATGATATTTTGG CCGCAATTGCAGTCTCGGGCTGTGTTTTAAAACCATGCCGTGTGTGTGGGGAGGATTTTGACATGGAGTCAACTTGGTTG CAGTCACCTGACTGGCCAAGCTGAATTGATTGATTAGGTTAACACATTGCTTTTTAGTTGCTTGTAAGTTGCTAAATTTT CCCCTTGGTATTTTTTTAAGCAATAGAGAATTGAGATTTGAAAGTTGTGTTGATGTTATTTTTGTTCAAACAGCTCCTGA GTTGGTGATGCTATAATGTGGATATTTCTGAGATCAATGACCTTCTTCATCTGATGCCATCTTTGTTTCAAGACCAAACT GTTATTTCATGAAACGTACATAATATAAGTAGCTTAGTATCAGAAAAAAATTTAGAAAATGAGAATAATTGCTGGCTGAA CACCCATCTATCTTTCAAGACCAAACTGTTATCATTCATGAATTGTAAATAGTTAAATATAAGTAGCTTACTGTGAGGAA AAAACTTGCAAAGGAGAGAAAAATTGCTGGCTGAACTTCCAGGATGATATATATTTTGTTTGCTTTAATCATTTATCGTG ACAGAGCATTCATGTAACCAACTCTACTCAGTGGGGCAAGACTTAGATGATGTGGTGTTGTTGTTGTCTAATAATTTATA GTGGAACCATCTTAATCAATGGGGCTGGTCTCTACCCATAACTGTTTCTGAAATGTATTCTTCACTGCTTTTCTAATTTT TTTTTATACATTGGCAGGTCTGTATTCTGGGCTTTGTTTGGGGCAATATATCTGTGTTTTGGCATGCCAGAAGTGTATCG TGTTCTTTTTGAAGTCTTTGGAATGGATCTAGAAGCTGAGTATTGCCAGCCAAAATTGCGTAGGCAACTTGAAGATATAG ATCATGTATCTGCTGAATTTAAAGGCAAGCTAAGCTGGCAAGATGTGGTTGCATATAAGGCAAGCTCTACACGTCTTATG TCATAGTATTATTTGTTTTGACAAGTTAGCACGTAAAGATCTAAATATTGTCTACTTATAGCATGTTTAGATCATCTTGT TTTCTCTCAGAATCAATTCTGGCACTTAGAAGTATTCACAGTAGCTTCTCGCCTTCTCCCCAAATAATTGATTTTGATTG TAGAATCAATTCCAGGAGGATTTCGGATTTCCAAACATGTTATTACTATGGTTGACAAACTCTATTTTACGTTCATGTTT GTTTTCATGCTCTATTGTGAAATATGCATGAAAAATTCCTTTCATATGACATAATTTGCAGATATTATTATTAGGAAGAA CAGCAATGATGTTTACTGTTCTCCATTCAGCCTCCTGCAGATGCCCTGTTTGCAAATCCACGGCTGTTCAGAGCTTGTAT CCCCCCAGGCATGCATCGGTTTAGAGGAAATATATGGGATTATGATAGCAGACCCCAAGTAATGCGAATCCTCGGATATC CATTAGATATGGAAGATAGAATTCCAGGAATTACTGATGCTAGGAACATAGAGCTTGGACTTGGATTGCAGGTAGCTCTA ATATTGCCTCTTATTCTGCTTTTTCTTTGGCACTATCAAGTATCAGGGTATTGCATGTTGATTGTTTACAACAACAAAAA CAGATTCATTTTCCCACTAGGTGGAGTTGGATGCATGATCAAATGACACCGTATTTTTTTATTCTAAATATGTCTATTGA CAAACCATTGAAATCTGAATCCTTCATAATGGTTTGGCCTATCGTTTTTTAGGTCTTCTTCTACTTCTTATGATTGGACT ACCCTACATTTGATCTACACTCCTTAATAGAGCTTCTTTAGGTCTTCTCCACCCATAGGTTATATCCTAACTTCCTTCGA CATGCAATCCCTCATACTCCTATCATACCTTGTGTGTCCATTTATCCTTCATAACACTCTTATTTCTGCAACATTGGGCT TATTTTCTTATTGACTCTTTACCACCCAACATTCAATTCCTTGCAAGTTATAACAAGTATGTTCATAGGTTAACTAGGAA ATATTATTTTACAACTTTCTATAGTATCTTCCTTGGACCTTTCATGGAAGATAACAAGTCAATTGATCAGCTTGAAGGTT CCTTGCTTCTGTTCCAAGTTCTGATATTATTGAATTTCTTGTTGAATTGCAGCTATGTTTCTTGCATCCATCAAATTACA AGTTCGAACATCCTCGATTTTGCTACGAGAGATTAGAATACCTTGGCCAGAAGATACAGGTAGACGACTCTTTTTGCTGT CTGATATATCGTATTCTAAAATTTGCTCACCTCCTCTTTGTTGCATGCCGTATAATTTTATTTATTGATTTATTGTGTAT TTTGTTTAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCTGGGTTCTGGATACAAGAAAAGCA CCGCCGCATACTTATGAACAAGTATTGTGGAAGATATTTGAGGGCCAAACAACTCCACCATTACATTATATATTCTGATA AGGTTAAAGATGCTTACGGGCGCAGTCATAGACTGAGAAACCCGGCCACAACATCTGTTCAACAAGCCCTTCACGGGCTT TCATATGCTGTATATGGGAAGCGTGATGTAAGACGTCTGATGTTTGAGGTTTTTGACTATGAGCAAGTCCAACCTAGAAC AATTTAAATATGAAGAGACAGTAGTGACATTACACAAGGATACAAGAAATTCCACTTTCATTTATTCTTTGACCCCCTTT TCCTTCATCTTTTACATCTTTCTCTGCTTTTTTTTACCCTCTTCATTTAGGATTCTCCATATTATGATTTGATCCTCTTA TTTTTAGCTGATTTTCAAATTCTTCGGAAGCTGCTCTTGTATATATTCATTGTATTGTATTACTATTAGTTTTGAGACTA CATCTGAGATGACTGTAAGAGCATGAAGACAAGGATGCATTCTTCTCCAATATCCAAGGTCCAAGAGTCTAGTTGGTTGA GTTGGTGATTTTAGAATGAAA
CDS sequence (LotjaGi4g1v0097200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGAATTTTCTTCTCCCCACACACAAATGGAGCTTTCTTCTTCCTTTCTACTTCCCCATAAACCACTTCACTCATC ATCCTATTTACACAACCCACTTCGAATCACCACAAAAACCCGACACCCCACCACCCAAATCCTCCGTATTTCCGCGGTGG CCATCGACCCGCCGCCGCAGGAGCTTCCTCAGAACAGTCCCCGCCGCCTCCTGCAGGAGCTCGCCGAACGCAAGAGACCC TCTCCGAAAAGAAGAGCACCGCCGAGAAGGTTCGTCCTCACTCCTCCGGTTAACGACAAGAAACTCGCCAACAGGCTCCT GAATAGCCCACAACTGACGCTGAACAATTTCCCTGTGCTGAGTTCATGCCTCCCTTACGCGAAGCTCAATGATAACGACA ATGCGTGGATGGAGGAGCATTTGATGGAAGCGAAGCAGGCGTTGGGGTACCCTTTGGAGCCGTCGGAGGAGGTGATGATG GGGGAGGGGAATCCGGCGAAGATGCTCGATACGCTGCTGTATTTGGCATTTCAGCACCCCAAGTGTGAGAGGTCGAGGGC GAGGCACGTGAGGTGTGCGCACTCGAGGTTGGTGTTTCTGGGGCAGTATGTGTTGGAGCTGGCGTTGGCGGAGTTTTTCT TGCAGAGGTACCCGAGGGAGTCGCCCGGACCGATGAGGGAGCGGGTTTTTGGGTTGATTGGGAAGAGGAGCTTGCCCATG TGGATTAAAGCTGCGAGTTTGCAGAATTTGATATTCCCCAATGTTAATATGGATAAGTTGGTTAGGAAGGACAGGGAGCC GATCGTAAAGTCTGTATTCTGGGCTTTGTTTGGGGCAATATATCTGTGTTTTGGCATGCCAGAAGTGTATCGTGTTCTTT TTGAAGTCTTTGGAATGGATCTAGAAGCTGAGTATTGCCAGCCAAAATTGCGTAGGCAACTTGAAGATATAGATCATGTA TCTGCTGAATTTAAAGGCAAGCTAAGCTGGCAAGATGTGGTTGCATATAAGCCTCCTGCAGATGCCCTGTTTGCAAATCC ACGGCTGTTCAGAGCTTGTATCCCCCCAGGCATGCATCGGTTTAGAGGAAATATATGGGATTATGATAGCAGACCCCAAG TAATGCGAATCCTCGGATATCCATTAGATATGGAAGATAGAATTCCAGGAATTACTGATGCTAGGAACATAGAGCTTGGA CTTGGATTGCAGCTATGTTTCTTGCATCCATCAAATTACAAGTTCGAACATCCTCGATTTTGCTACGAGAGATTAGAATA CCTTGGCCAGAAGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCTGGGTTCTGGATAC AAGAAAAGCACCGCCGCATACTTATGAACAAGTATTGTGGAAGATATTTGAGGGCCAAACAACTCCACCATTACATTATA TATTCTGATAAGGTTAAAGATGCTTACGGGCGCAGTCATAGACTGAGAAACCCGGCCACAACATCTGTTCAACAAGCCCT TCACGGGCTTTCATATGCTGTATATGGGAAGCGTGATGTAAGACGTCTGATGTTTGAGGTTTTTGACTATGAGCAAGTCC AACCTAGAACAATTTAA
Protein sequence (LotjaGi4g1v0097200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEFSSPHTQMELSSSFLLPHKPLHSSSYLHNPLRITTKTRHPTTQILRISAVAIDPPPQELPQNSPRRLLQELAERKRP SPKRRAPPRRFVLTPPVNDKKLANRLLNSPQLTLNNFPVLSSCLPYAKLNDNDNAWMEEHLMEAKQALGYPLEPSEEVMM GEGNPAKMLDTLLYLAFQHPKCERSRARHVRCAHSRLVFLGQYVLELALAEFFLQRYPRESPGPMRERVFGLIGKRSLPM WIKAASLQNLIFPNVNMDKLVRKDREPIVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDLEAEYCQPKLRRQLEDIDHV SAEFKGKLSWQDVVAYKPPADALFANPRLFRACIPPGMHRFRGNIWDYDSRPQVMRILGYPLDMEDRIPGITDARNIELG LGLQLCFLHPSNYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAPGFWIQEKHRRILMNKYCGRYLRAKQLHHYII YSDKVKDAYGRSHRLRNPATTSVQQALHGLSYAVYGKRDVRRLMFEVFDYEQVQPRTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 538 | 531 | 1.9E-287 | – | |
| PANTHER | 8 | 538 | 531 | 1.9E-287 | – | |
| SUPERFAMILY | 135 | 309 | 175 | 3.66E-21 | ||
| Gene3D | 169 | 302 | 134 | 3.8E-14 | ||
| SMART | 171 | 306 | 136 | 2.5E-23 | ||
| CDD | 171 | 302 | 132 | 2.41564E-27 | ||
| ProSiteProfiles | 172 | 285 | 114 | 15.234 | ||
| Gene3D | 401 | 531 | 131 | 7.4E-10 | ||
| CDD | 403 | 528 | 126 | 2.50058E-20 | ||
| SUPERFAMILY | 403 | 529 | 127 | 1.48E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi4g1v0097200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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