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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0097200 |
| Transcript ID | LotjaGi4g1v0097200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|A6YSL1|RNC1_MAIZE Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|G7JCT8|G7JCT8_MEDTR Ribonuclease III domain protein; Found in the gene: LotjaGi4g1v0097200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13155367..13157236) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAGAAGTGTATCGTGTTCTTTTTGAAGTCTTTGGAATGGATCTAGAAGCTGAGTATTGCCAGCCAAAATTGCGTAG GCAACTTGAAGATATAGATCATGTATCTGCTGAATTTAAAGGCAAGCTAAGCTGGCAAGATGTGGTTGCATATAAGGCAA GCTCTACACGTCTTATGTCATAGTATTATTTGTTTTGACAAGTTAGCACGTAAAGATCTAAATATTGTCTACTTATAGCA TGTTTAGATCATCTTGTTTTCTCTCAGAATCAATTCTGGCACTTAGAAGTATTCACAGTAGCTTCTCGCCTTCTCCCCAA ATAATTGATTTTGATTGTAGAATCAATTCCAGGAGGATTTCGGATTTCCAAACATGTTATTACTATGGTTGACAAACTCT ATTTTACGTTCATGTTTGTTTTCATGCTCTATTGTGAAATATGCATGAAAAATTCCTTTCATATGACATAATTTGCAGAT ATTATTATTAGGAAGAACAGCAATGATGTTTACTGTTCTCCATTCAGCCTCCTGCAGATGCCCTGTTTGCAAATCCACGG CTGTTCAGAGCTTGTATCCCCCCAGGCATGCATCGGTTTAGAGGAAATATATGGGATTATGATAGCAGACCCCAAGTAAT GCGAATCCTCGGATATCCATTAGATATGGAAGATAGAATTCCAGGAATTACTGATGCTAGGAACATAGAGCTTGGACTTG GATTGCAGGTAGCTCTAATATTGCCTCTTATTCTGCTTTTTCTTTGGCACTATCAAGTATCAGGGTATTGCATGTTGATT GTTTACAACAACAAAAACAGATTCATTTTCCCACTAGGTGGAGTTGGATGCATGATCAAATGACACCGTATTTTTTTATT CTAAATATGTCTATTGACAAACCATTGAAATCTGAATCCTTCATAATGGTTTGGCCTATCGTTTTTTAGGTCTTCTTCTA CTTCTTATGATTGGACTACCCTACATTTGATCTACACTCCTTAATAGAGCTTCTTTAGGTCTTCTCCACCCATAGGTTAT ATCCTAACTTCCTTCGACATGCAATCCCTCATACTCCTATCATACCTTGTGTGTCCATTTATCCTTCATAACACTCTTAT TTCTGCAACATTGGGCTTATTTTCTTATTGACTCTTTACCACCCAACATTCAATTCCTTGCAAGTTATAACAAGTATGTT CATAGGTTAACTAGGAAATATTATTTTACAACTTTCTATAGTATCTTCCTTGGACCTTTCATGGAAGATAACAAGTCAAT TGATCAGCTTGAAGGTTCCTTGCTTCTGTTCCAAGTTCTGATATTATTGAATTTCTTGTTGAATTGCAGCTATGTTTCTT GCATCCATCAAATTACAAGTTCGAACATCCTCGATTTTGCTACGAGAGATTAGAATACCTTGGCCAGAAGATACAGGTAG ACGACTCTTTTTGCTGTCTGATATATCGTATTCTAAAATTTGCTCACCTCCTCTTTGTTGCATGCCGTATAATTTTATTT ATTGATTTATTGTGTATTTTGTTTAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCTGGGTTC TGGATACAAGAAAAGCACCGCCGCATACTTATGAACAAGTATTGTGGAAGATATTTGAGGGCCAAACAACTCCACCATTA CATTATATATTCTGATAAGGTTAAAGATGCTTACGGGCGCAGTCATAGACTGAGAAACCCGGCCACAACATCTGTTCAAC AAGCCCTTCACGGGCTTTCATATGCTGTATATGGGAAGCGTGATGTAAGACGTCTGATGTTTGAGGTTTTTGACTATGAG CAAGTCCAACCTAGAACAATTTAAATATGA
CDS sequence (LotjaGi4g1v0097200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGAAGTGTATCGTGTTCTTTTTGAAGTCTTTGGAATGGATCTAGAAGCTGAGTATTGCCAGCCAAAATTGCGTAG GCAACTTGAAGATATAGATCATGTATCTGCTGAATTTAAAGGCAAGCTAAGCTGGCAAGATGTGGTTGCATATAAGCCTC CTGCAGATGCCCTGTTTGCAAATCCACGGCTGTTCAGAGCTTGTATCCCCCCAGGCATGCATCGGTTTAGAGGAAATATA TGGGATTATGATAGCAGACCCCAAGTAATGCGAATCCTCGGATATCCATTAGATATGGAAGATAGAATTCCAGGAATTAC TGATGCTAGGAACATAGAGCTTGGACTTGGATTGCAGCTATGTTTCTTGCATCCATCAAATTACAAGTTCGAACATCCTC GATTTTGCTACGAGAGATTAGAATACCTTGGCCAGAAGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCAT TTAGATGCTCCTGGGTTCTGGATACAAGAAAAGCACCGCCGCATACTTATGAACAAGTATTGTGGAAGATATTTGAGGGC CAAACAACTCCACCATTACATTATATATTCTGATAAGGTTAAAGATGCTTACGGGCGCAGTCATAGACTGAGAAACCCGG CCACAACATCTGTTCAACAAGCCCTTCACGGGCTTTCATATGCTGTATATGGGAAGCGTGATGTAAGACGTCTGATGTTT GAGGTTTTTGACTATGAGCAAGTCCAACCTAGAACAATTTAA
Protein sequence (LotjaGi4g1v0097200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPEVYRVLFEVFGMDLEAEYCQPKLRRQLEDIDHVSAEFKGKLSWQDVVAYKPPADALFANPRLFRACIPPGMHRFRGNI WDYDSRPQVMRILGYPLDMEDRIPGITDARNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKH LDAPGFWIQEKHRRILMNKYCGRYLRAKQLHHYIIYSDKVKDAYGRSHRLRNPATTSVQQALHGLSYAVYGKRDVRRLMF EVFDYEQVQPRTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 253 | 245 | 1.1E-155 | – | |
| PANTHER | 9 | 253 | 245 | 1.1E-155 | – | |
| Gene3D | 115 | 247 | 133 | 1.5E-10 | ||
| CDD | 118 | 243 | 126 | 3.15739E-21 | ||
| SUPERFAMILY | 118 | 244 | 127 | 2.62E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi4g1v0097200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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