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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0100100 |
| Transcript ID | LotjaGi4g1v0100100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-transporting ATPase; TAIR: AT4G37270.1 heavy metal atpase 1; Swiss-Prot: sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; TrEMBL-Plants: tr|O22498|O22498_SOYBN Putative cadmium-transporting ATPase; Found in the gene: LotjaGi4g1v0100100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13641616..13643610) extracted from Lotus japonicus Gifu genome v1.2.
GATAATATGCTACTCTGTTTCATTCTCAACAGGTTCCACCTCAACCTAACTGACTATCCGCTTGATGCAGGTAACATTGA TTCATCTAGAGGACAGGCCTCGTCCAGGGGTTTTTAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATG ATGTTGACTGGTGATCATGAATCTAGTGCAAAGAGAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAA GCCCGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGTGAGTTCCTCCATTAGAGTTTTGTTTTAATCT TTTTTGTCTTTCATAACATGATTTACTGTTGGACGGATTTCAGTGCTATATACATGTTTATAATATTTTTCTTTTTTAAC TACACACTATTGATTTCTTTCCAATATAAGTTCCATGCCCACTCACTTCTAGATTCAACTGTATGAGGAAATTTTTCAGA ACTGAACACGCTTCACGTCTGACTCTTCTTTTATTGCACCTTTTTTATCAGTGCTGCAACTACACATTCTTCTATTTATC ATGAGACTATTTTCTTAACCAGGCTCCGGCATGATATTGACTAAATTGAATTACATATTGTTGTACTCTTATGGCATTTT GTTTTTTCTCGTGACAGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTG TTGGAATTGTTCTTGCACAACGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCT GCAGTGCCTTTTTGTATTGCCAAGTCTCGTCAAACAACTTCACTGGTATTTTATATCAACTGTTATGAGACTTCATTTCT TCATCACTTGGATGTTGTTGTCTTATATGTGAATGCTCATGCAGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATT ATCATGGCTTCTCTTCCGTCAGTTTTAGGATTTGTGCCATTGTGGTTAACGGTATGAAACTCAACTGACTTCGATGCTGG ATCTTGATACTATTTGCCAGTCATGTTTTATTGTGGTTTTCTTTTGGCATTATGTCATCATGTAGTGAATGCCTTGAACG GAGTCTTGTTTTAAAAAAAAAACTTGTGATCAAAATTGGGCAAACCACCAATTTCATCTCAATTGTGTCACTATTTTTCA ACTTAGTCCTTTTACAAAATTCTGATGAAAAGTAGTCCACGAACTATCTCCGCATTCTTCACATTAGTCTTTGCTAAGGT AGTTTGGGAACTCACATGAACGGCAGGTACATAGTTCAGGTATTAATGTGAAAAATGGGAAATAGTTTGAGGACTACTTT TTGTGAGCATGTCGTATGAAGACTAAATTGAAAGAAGATATTAACATTGGGGGAAAGATCTCGGTGATTTGCTCGATCAG AATTCACATGACCATTCTAGTAAAGGATGCGTATGGCTGTGGCCAAACCGGTTTTACTGAGAACAGTCCCCCTTTCTCTT TTGGGAAAAAAATATTATTCAGCTGATCTTGTTCATTGAGTTCTTGCTAATTATTACATACCTAAGATTAATATCAATTT TAAAACTAAAGCACCTGTTTGATTTCAGAAAACATGTAAATGTTTTGCAACATTGTTGAAAAATATACAAATTCTTTTAC TCATCCCCTAACAAAGTATTATTCTTTGAGCCTCGCTGTGAAAATCTTCAAGCTTCCCCCTTAATTGCATGTCAAACCTT TTTGTTTGGTTTCTGTTTAATCAAGTCTCTGGTCTATCCTTTTACATGCATGCAGGTTCTTTTACATGAAGGTGGAACCC TGCTTGTTTGTCTCAATTCAATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACC GAGGTTAAATCTAAACTCCTATCTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
CDS sequence (LotjaGi4g1v0100100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTAACATTGATTCATCTAGAGGACAGGCCTCGTCCAGGGGTTTTTAATGTTATTCAGGAGTTGCAAGATGAAGC AAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAATCTAGTGCAAAGAGAGTTGCAAGTGCCGTGGGCATCAATGTGT TTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATG GTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGAATTGTTCTTGCACAACGTGCTAGTGCAAC TGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAGTGCCTTTTTGTATTGCCAAGTCTCGTCAAA CAACTTCACTGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATCATGGCTTCTCTTCCGTCAGTTTTAGGATTT GTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCAATACGTGCTTTAAATGA ACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTAAATCTAAACTCCTATCTCTGAGGACAAATA TCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA
Protein sequence (LotjaGi4g1v0100100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVTLIHLEDRPRPGVFNVIQELQDEAKLRVMMLTGDHESSAKRVASAVGINVFHCNLKPEDKLSHVKDISRDMGGGLIM VGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIIMASLPSVLGF VPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDVLNLITEVKSKLLSLRTNITGPSSITTAKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 141 | 141 | - | – | |
| Gene3D | 1 | 150 | 150 | 9.7E-39 | ||
| PANTHER | 3 | 221 | 219 | 2.4E-108 | – | |
| TIGRFAM | 4 | 163 | 160 | 1.6E-35 | ||
| PRINTS | 4 | 15 | 12 | 3.6E-13 | – | |
| SUPERFAMILY | 4 | 181 | 178 | 4.59E-34 | ||
| Pfam | 6 | 94 | 89 | 5.8E-13 | – | |
| PRINTS | 27 | 37 | 11 | 3.6E-13 | – | |
| PRINTS | 81 | 97 | 17 | 3.9E-5 | ||
| PRINTS | 81 | 100 | 20 | 3.6E-13 | – | |
| PRINTS | 105 | 117 | 13 | 3.6E-13 | – | |
| PRINTS | 113 | 138 | 26 | 3.9E-5 | ||
| Phobius | 142 | 165 | 24 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 166 | 225 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0100100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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