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LotjaGi4g1v0112300.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0112300
Transcript ID	LotjaGi4g1v0112300.1
Lotus japonicus genome version	Gifu v1.2
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q4J8F0\|ARLY_SULAC Argininosuccinate lyase; TrEMBL-Plants: tr\|A0A151SEJ5\|A0A151SEJ5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0112300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:16069597..16071130) extracted from Lotus japonicus Gifu genome v1.2.

CGTCTAAGCTAAGTATGAATTATAGGAAAATGACAATAGTGATTATTATCATTTGAGGAGAAAATATTTTGGAAACGACC TGCTCCAAAATCTGACACAAAACTGATTAAGGAAATATTCTCCGGATGAAAAAACTTCATTCACGAAAAAGATTTATTGA GACGAAATGATTATAACTACGTGGACGGAAACTCCGGAAGGAGCCCCGAACACAAATCCTTTGGGGCAGGGTCTCACTTT AGTCCCTGCGGAGATAAAGTCTAACTTTATCGGATTTCCGGAAAGCGAAACCTATCGATCTTACAGTCAAAAGTTCCATA ATGGAACACTTGCCATAATCAAACATAAAACAATAGAATATAAACACTCAATTAAATTAATAAATCGAAAATAAATCAAT AGTCTAGTTATTTAATTCTAAAATCCTGGGTCTTATAGTGATCACACAAGTGCAGTTGCGGGGCGAGAACTACGACGAAT GGGCTCGAGCTGTAAGAATCTCTCTACGTGCACGGCGGAAGTGGGGTTTCATAGATGGAACTCTTGTTCAACCAGATGGA AAAGCCACAGAGATGGAAGACTGGTGGACTGTGCAGTCCATGCTCGTTTCATGGATAATGAATACCATCGAGCCTACCTT GCGTTCAACCGTGACATACATGGAGAATGCAAAGGAGCTATGGGAGGATTTTCGAGAACGCTTCTCAGTTGTGAATGGAC TGAGGATCCAACAACTAAAAGCGGACCTAGCAGATTGCAAGCAGCAGGGAATGACCATGGTTGCATACTTTGGGAAATTA AAAACACTTTGGGATGAACTGGCAAATTATGAGCAAATCCCAAGGTGTTCATGTGGAGGATGCAAATGTGATATTGCATC TAAACTTGAGAAGAGAAGAGAAGAGGAGAGGGTTCATCAATTCTTGATGGGCCTCGATGATGTGAGCTATGGTACGGTGC GCTCTAACGTACTAGCTGTTGATCCATTACCCTCACTGAATCGGGTATATGCTACCTTGGTTCAAGAAGAGAGAATGAAA ACAATTACAAGATCAAAGGAAGAAAGAGGAGAAGTCATGGGCCATGTTGTACAAGCAGGACTTAAGACAAAGGGGCGGCC AGATCCAAAAGACAAATCAATGGTGTGTTCACACTGTGGTAAAACAGGACATGATGGTAAAAGTTGCTTCCAAATTATTG GACATCCTGAGTGGTGGGGTGAACGTGCACGCAAAGAAGGTGGAACCAATGGCAGAGGTCAACAACGAAGTGGAACTTCT GCAGGACGTGGAAGAGGAGGGATGGTTCGTGCTAATATTGCCCATTAATTATATACCCAGTTACATCTACCCAGCTTCAT CTACCCATATATCTTTGTATTTCTTTTAACTAATTTATTCTCTTTCTTAAGGCTATAAAAAGAAAACTCTTGAAGCATAT TTCAATTTTGGAATTGAGAGTTTTCTCCGTTTGTCTTTAGGCTTCTAATTAAGCCAGGTATCAAATAGTTTGGACAATGG TAATTGAATGAAAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0112300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGACTGGTGGACTGTGCAGTCCATGCTCGTTTCATGGATAATGAATACCATCGAGCCTACCTTGCGTTCAACCGT GACATACATGGAGAATGCAAAGGAGCTATGGGAGGATTTTCGAGAACGCTTCTCAGTTGTGAATGGACTGAGGATCCAAC AACTAAAAGCGGACCTAGCAGATTGCAAGCAGCAGGGAATGACCATGGTTGCATACTTTGGGAAATTAAAAACACTTTGG GATGAACTGGCAAATTATGAGCAAATCCCAAGGTGTTCATGTGGAGGATGCAAATGTGATATTGCATCTAAACTTGAGAA GAGAAGAGAAGAGGAGAGGGTTCATCAATTCTTGATGGGCCTCGATGATGTGAGCTATGGTACGGTGCGCTCTAACGTAC TAGCTGTTGATCCATTACCCTCACTGAATCGGGTATATGCTACCTTGGTTCAAGAAGAGAGAATGAAAACAATTACAAGA TCAAAGGAAGAAAGAGGAGAAGTCATGGGCCATGTTGTACAAGCAGGACTTAAGACAAAGGGGCGGCCAGATCCAAAAGA CAAATCAATGGTGTGTTCACACTGTGGTAAAACAGGACATGATGGTAAAAGTTGCTTCCAAATTATTGGACATCCTGAGT GGTGGGGTGAACGTGCACGCAAAGAAGGTGGAACCAATGGCAGAGGTCAACAACGAAGTGGAACTTCTGCAGGACGTGGA AGAGGAGGGATGGTTCGTGCTAATATTGCCCATTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0112300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDWWTVQSMLVSWIMNTIEPTLRSTVTYMENAKELWEDFRERFSVVNGLRIQQLKADLADCKQQGMTMVAYFGKLKTLW DELANYEQIPRCSCGGCKCDIASKLEKRREEERVHQFLMGLDDVSYGTVRSNVLAVDPLPSLNRVYATLVQEERMKTITR SKEERGEVMGHVVQAGLKTKGRPDPKDKSMVCSHCGKTGHDGKSCFQIIGHPEWWGERARKEGGTNGRGQQRSGTSAGRG RGGMVRANIAH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34222 View details on PTHR34222 Search for proteins/transripts with this domain View external data on PTHR34222	9	235	227	7.0E-58	–
PANTHER	PTHR34222:SF6 View details on PTHR34222:SF6 Search for proteins/transripts with this domain View external data on PTHR34222:SF6	9	235	227	7.0E-58	–
Pfam	PF03732 View details on PF03732 Search for proteins/transripts with this domain View external data on PF03732	24	122	99	2.5E-8	IPR005162 Show description in modal box View details on IPR005162 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50158 View details on PS50158 Search for proteins/transripts with this domain View external data on PS50158	192	205	14	8.614	IPR001878 Show description in modal box View details on IPR001878 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	218	251	34	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0112300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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