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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0119100 |
| Transcript ID | LotjaGi4g1v0119100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT4G36550.1 ARM repeat superfamily protein; Swiss-Prot: sp|O23225|PUB5_ARATH U-box domain-containing protein 5; TrEMBL-Plants: tr|A0A072TSG5|A0A072TSG5_MEDTR Ubiquitin-protein ligase; Found in the gene: LotjaGi4g1v0119100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17193616..17199783) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGATGGGGAAAAACTTGGTTTTTTTTCCTGTGTCCAAATCTATCAAACCAAGTCTCTATTTATAGAGAAAAAAAAGT TATGAATTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAACATTTTCAACAAGATAATTCAGTTTAAAGTTTTTTTAAAAAA AAAATACCGCTGGCCAATGGGACGCTGCCACGCGTCCCATCCTCACCCACTCGGTCTTCTCTCTCCTCTCCCACTGACAC GCCACGCGCCTTGTCGGCGCGTGTCGTGCACGCGCCCTGCTGTCTCCAATCCGGAGCTGCCACGTGGCTCCGGAGGCTCC TCTCAACATTGTTGAACCGGTTCAACATTTTCCCACTTTCAACAGCTTTCAACCAACCATTGCATGGGTTCAACAACTCT CAACATGTTTCAACATGGCATTCAACATGCCATTGTACATGGTCTAAGATTGTGCTATGTGTAGCTTAGCTCATTCCTTC CTCTTTCCTAGACTTTGTCCTTTACTTTACCACCAGAAAATCCTCAAAATTCTATTCCTAGAAACTCTGATTCATCTTCA TTCCCCTCATTCTTTCACTCTGAATTCTTTGTTTGCAATTTTCTGAGCAATCCTATATGGTTTGATTTTTATTTTTATTT TTCATGGGCATGCTTCATTTTCACTGAAGATTAATTTTTTGGCCTTTTCCTTTGGTGGGTCATCGTGATTATCTGCTTTG CTGGTGTAGGACAGTTATGAGGGGATGAGGACATTCACCGTACAAATAGGGGGGTTTTGGTTTTGATGATAAGAAGAGAT AAGGACCTTTGGCACATGCTAGTACACTTTACTTCAAAAAAAGTTCCTTGGGACCTTTGTGTTTTGTTCATCATGCTTAT CTATGCTAGACCTGCACCAAAGACTTTGTGATGAAGTGTCTGAATTGAGCTTCATACAATTAAGTTCATGGCTACAAGTC TTCATTTTGCGGCTCTTGGCGTTTAGTGTTTTTTTTTTGTTGGTTTGGTATTGGTTTAATTGGTTCTGTTGGATTTCTTC TCCACATAAGCCGCCAGGCCAGGTTTCTTCTTGTCATCTTCGTTGCACTAGGTAGGTTGTTTCTCCTTCTTTGTTTGCTA TGGTGGAATTGTAGTTACTTTCAACCCTCTATTTTCATTTTTAGGTTCAAAACATTTGCCATGTACTGAATTCTGTTAAT CTTTCACAAGTTAGAACTGATAGTTAGTTTTGCTCTTTTTCATTTGGTATATTGGCCCTTTTGATCTTCTTTGACCAGGT TGTTTACCCATGGGTTGCTCAGTTCTAGTGCAAACTGAAAGCTGAAAAGTCAATATGTATTGTTCAAAAAAAAAAATTTC CTTTATATTTTTCTAGTCTTTAAAAAACCTGTCTATTTGCTTGGTGTCGCTTTGACACACTATGATCTTAAACAATAGGT TGAAATTCTGTGCCGTGGAAGATTTCAGTTAGGGAAAACCTACACGGCATCTTAGTGTGCGCTTGGTTACGAGTTAAATG CAACGTGAGCAGATTTTTATCTCAATCCATAAGAAGAATTCTGTTCACTTTGTGTTGAAGTGCGAGCTAACTTTTATTTG CTCTGGTGCCAACAAATATCCAAACACAGCCTTAGTTTTGTCATTTGGTTGGTCTTTTGTATGTTGGTTGAACTTAGATT AAGATATATTTTAATTATTTTTGGTGAAAGTTTAAAATGGGATATCTAGTTACTATTTCAAAGTCCCATTAGTTGCAAAT TTAGATTTAGGCATGAATATTCTGTAGTTCTATTTCACCGGCTGGAGTATCCCAAGTAAATTTTCCCTTTTCCAATTACT TTTTTTGTTTGTGTATGTCTGTATATAGTGTTAAAGATCTTGTGCATGTGTTACCAGTTGATCATCTTGTCCATATACCA CTTGATCTGGGAAGGAATTTTTATGCTTACTTTCATGTTGCTGTTTAACTGTGTTTTGAAATGAATACTAACTTTTTACT CTTTAGAAGTAGCTTGATGTTTTTGGCATATAACTTTGAGTTTAGCAGCCCAAAGTCATCACTCTGCATGTTGGAACCGG AAATTTACACGAGCTCAATATTTCATATGCAGTAACTTTTTTTTAGAGCTCTATGCATGATTCTTTGCAATAAGTGCATT AAATAGCTTAATGTTCTTTCCTTTCTAATGTGTAGCTCCGGGCACTCCTGCAAATGGGAACTGATGGTTGTGAAGTGGAG ACATTACCTTACTCCTTTAAGGTACAGAACATAATTGAAATGAACTATGTTTTAGTGAGGATATTTTATGATACTGCTTT CCATAGCTGCTGTATTGATTCAGTTATGATGAAAACAAGCTTAGAAGCTTTGTGCTCAATCATGAGGTTATTCTTTTCAA ATATTTTGCCTTTGTTTGCTGGTTTTTTTTATGTGGTATTTGTTTGGCCTAGAAGAAAAAGCAGCTAACTCCGGCACTTG GCTTTTCTTTAATGTTATGTCATATGTGGGTGTTTTTTCATCTACACGTGGATGTTGTAACTAAGCATTTTATTGATTGC AATTGCAATTCATGTTGGAAGGTACATTGTAGAATGTGCACAGAACTCAAGAAATTACTTGAGAGAATCTTAAGGATATT TCCGCTTATAGAGGCGGCACGCCCTCGGTCCTCATCAGGAATACAGTCTCTGTGTTCGCTAAACAGTGCAATTGACAAAG CCAAACAACTTCTGCAACATTGCTCGGAATCTAGTAAACTCTACCTTGTGAGTATTTCTTTTTTATTATTTCAGCTTGAC AAAGTTTTAGATATTTGAATCTGCATCAATTATATCTCCAACAGCGGAGTGGGACTGCCATTTCTTCTTCATGAGAGTTC AAGATTTTGAAAGCAGATTATATTACGTTTTTCTATTGCATCGGAGTTCTGCAAATATTTGGTTATAAGTTTATCAGATG TCGAAAAATATTGAGCTACTAAAGTTACACATGATCTTGTTAAATTGTTCTGTTGTCATGCTGCATGCTAATTTAATTGG TTTTAATATTAATTGTAGGCAATGTCAGGGGAGTCAATACTCTCAAAATGCCAAAAGGCCAAAAGATCATTAGAGAAAAG CTTAATCCAGATTCAGGATATGGTTCCAGTTATGTTGGCTGCAGAGGTTTGTTAAGTTAGCACCCTATCCACTTTTATTT GTCTAGTACTCTGCTTCAAATTCTTTTCTTTTATTACCTACGTATGAATCAGGCACTTTTCACATAAGTATTCAATTGTT ACATTATATACCCATTTTGAGCTTCATTTTAATGCTTTAGTTGGCATTGCAATGTCTCTGGCAGATTTCTCGAATGATTC ATGATCTTGGATATGTGACATTTGTCCTGGACTTTGCTGAAGAAGAGGCTGGTAGGGTTATGAGAGAATTACTGCAGCAA GGTCATTCCGCCTCAGATAAAGATTCAATTGAAAATTCTGATGTTAAATCTCTTCAGTTTGCAGTGGCAAGACTTAATAT TACATCCTCAACTGCCGTCGTAATAGAGAAACGATCTATTAGGAAGTTGTTGTTGAATGTTAGACCAAATGACCAAACAA AAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGACAAAGTACAGAAGTTTCATCACAGGAGAACAAATGGAGGCCTAT CATCTTAGTGAAGGACCAGTAACAACTGAGAACATGGGTCATGTTAATCATGTTATGTCAGAACCAGACCTGAACCGTGA TCAAAATAGAACTCACGCCGGCGAGTTGGGAAGAGTTACACCACCTGAGGAATATACATGCCCAATATCTTTAAGGTTGA TGTATGACCCTGTTGTCATTGCTTCAGGAGTTACATATGAAAGGATGTGGATACAGAAATGGCTTGATGAGGGTAATGGA ATATGTCCAAAAACTAAGAAGAAACTGGTTCATAGGGCACTGACTCCTAATGTTGCCATAAAGGACTTAATAGTAAAGTG GTGTGAAATTAATGAAGTCTCTATTTCTGATCCAAGTAGGCAAGTGGAAGATTTTCGCTCGTGGGAATCTTCCTCCAATT CCATTATGAGTTTTGGAAGTTCTATGAATGATTTGAATTTGCCAATGGATTTTAGTGGCATCTCACTTGGATCGTTAGAT ACTAGTATTGGTTCAGGTTTCTCACATGTAAAGGCCAGTCATGGCTTAAATTTGATGTTGGTTAAAACTAGTGAGGATTC TCACAGGCATCAGTCAACACATGACGCAGATCTGACGCGCTTGTCTAAACTCCATGATAGTCAATGGGATTCTCAGTGCC AAGTCATTGAAGATATGAAAATAAATTTCAAATGCAATTACCAAGCTTCTTGCTCTGTGTCATTTGAGAATTTCATTGAC CCACTCACAAGATTTCTGAGCACTGCAAATGAGATGCATGATGTGAAAGCTCTGCGAGGTGGAACTCAATTGCTTTTGGA ATTTATGAAATACCACAGGTACAATTTCTTTCACCCTCACAATTTGGTTCTTGGTATGCTGCCGATAATTTAGTTGGGTT GGTTTACATTTATCTAATTTAAATTGTTTGCTAAATTGTGAGTGTTTACTAACAATTATGCTTTCAAAACAATATTCACT TGGTTTAGAGTAACAAGGAGTGCTTGTTATGTAAAGGTTTTTTTTTTTTTTCCTTTTCAATGTTTGAAACATCAAGGTTA TATTTCATCCACTTTCAATGTAAGAAAAAAGTTCCTTTCCAATTTAATATGCTGGTATGACATTTGTGGTTTTCATGCAG AAATGGTTTGAAAAATTTAAGTGAAGATACATGCACTGTGTTAGCAAGTCTTCTTGAGTCAGAAGTGATTGAAGAAGCTC TTGCCATAATGGAAGTACTTTCTGGGTATTGGTCTGATAAAGCTAACATTGCAGCTTCGAGTGCTCTCTCTTCTGTTTCA AAGTTCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAAGCCATTAGAATGGTGTGTAAATTTTCATACAATGGCGAACT TTGTCCTTACATTGTATCTCTCGGGTGCATCTCGAAATTACTGCCGTGTTTTGAAGACAAGGCCCTTTCGAGAGACTGCA TATGCATATTGAAAAACCTTTGTGATACCGAAGAGGGTAGGATGTCTGTTGTTGAAACCAAAGGATGCATATCTTTTATT GTTGAAGTAATTGGGAGTGGCAGTGATGAGGAAAAAGAACTTGCACTTGCTATTGTGCTCTCTTTATGCTCTCAACGCTT GGAATACTGTGAGCTGGTTTTGTATGAGGGTATTATACCTTCTCTCGTCATTATCTCCAACACAGGAAATGATAGCACAA AGGCGTATGCACTGGAACTGCTCCGGCAATTGAGGGAGGTTGACAGCTTTGACAATAGCGATTCCTCTGAGCCGAATCTC AACAACCCTCGAGATTCTAACAATCGGTTCGAAGAAAAGAAACCGTCAAAGAAGTCGACATTTTTTAAGAAACTAGGTCT GTTCTCAAAACCCAGTTCACTTGCAGCAAAAAGCAAGAAATGAAACAGAGTTCCCATGGTAGGAGACATTTTGGATTGCT GGATGCAGATAGGATTCTTAGATAGAGTTTTAATTTTAATCATTGGATACAATTTTTCAATTAATACTAATAGTGTGTTT GGATTGGCAGTCAACACACAATCTAAAGCACAATGACCCCAAAAGTTAGTTTCTCTCTAGAAGTGATTATAGGGTCATGA TTGCAAAACCAAACACATGCTAAGTCTCATCTTGCTGGATCATGGCTCTAAATATTCATTCACAGTGTTTCTGCTGCATA ATTTTGCACAGCAACTGCAAGCTGTATGATATATAGTTCTGTGATATGATGTATAGTTCTTTTGACATGCCAAGTTAACT TGGTAATCACTTTTAGTTATTATAGTTGTAAATAGCAATTTTGGCATGATAAGATTAGAGCTTTTGATTGGTTGTAATCA GTAGTTTGGGTTTGAGCAAGAATTATTCAGTTGTAGAAATAGCTTTTTACCTAAGTAAGTTAGGCACTGAGCTGTCTTTC TTATTGTTATTATTATGTTGTATAAATTAAATAATGTATTTTGAGCTTTGAGTTCAATATAGTTTCTTTGGCTAAATTAC AGTTTTGG
CDS sequence (LotjaGi4g1v0119100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTGATGGTTGTGAAGTGGAGACATTACCTTACTCCTTTAAGGTACATTGTAGAATGTGCACAGAACTCAAGAA ATTACTTGAGAGAATCTTAAGGATATTTCCGCTTATAGAGGCGGCACGCCCTCGGTCCTCATCAGGAATACAGTCTCTGT GTTCGCTAAACAGTGCAATTGACAAAGCCAAACAACTTCTGCAACATTGCTCGGAATCTAGTAAACTCTACCTTGCAATG TCAGGGGAGTCAATACTCTCAAAATGCCAAAAGGCCAAAAGATCATTAGAGAAAAGCTTAATCCAGATTCAGGATATGGT TCCAGTTATGTTGGCTGCAGAGATTTCTCGAATGATTCATGATCTTGGATATGTGACATTTGTCCTGGACTTTGCTGAAG AAGAGGCTGGTAGGGTTATGAGAGAATTACTGCAGCAAGGTCATTCCGCCTCAGATAAAGATTCAATTGAAAATTCTGAT GTTAAATCTCTTCAGTTTGCAGTGGCAAGACTTAATATTACATCCTCAACTGCCGTCGTAATAGAGAAACGATCTATTAG GAAGTTGTTGTTGAATGTTAGACCAAATGACCAAACAAAAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGACAAAGT ACAGAAGTTTCATCACAGGAGAACAAATGGAGGCCTATCATCTTAGTGAAGGACCAGTAACAACTGAGAACATGGGTCAT GTTAATCATGTTATGTCAGAACCAGACCTGAACCGTGATCAAAATAGAACTCACGCCGGCGAGTTGGGAAGAGTTACACC ACCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGTTACATATGAAA GGATGTGGATACAGAAATGGCTTGATGAGGGTAATGGAATATGTCCAAAAACTAAGAAGAAACTGGTTCATAGGGCACTG ACTCCTAATGTTGCCATAAAGGACTTAATAGTAAAGTGGTGTGAAATTAATGAAGTCTCTATTTCTGATCCAAGTAGGCA AGTGGAAGATTTTCGCTCGTGGGAATCTTCCTCCAATTCCATTATGAGTTTTGGAAGTTCTATGAATGATTTGAATTTGC CAATGGATTTTAGTGGCATCTCACTTGGATCGTTAGATACTAGTATTGGTTCAGGTTTCTCACATGTAAAGGCCAGTCAT GGCTTAAATTTGATGTTGGTTAAAACTAGTGAGGATTCTCACAGGCATCAGTCAACACATGACGCAGATCTGACGCGCTT GTCTAAACTCCATGATAGTCAATGGGATTCTCAGTGCCAAGTCATTGAAGATATGAAAATAAATTTCAAATGCAATTACC AAGCTTCTTGCTCTGTGTCATTTGAGAATTTCATTGACCCACTCACAAGATTTCTGAGCACTGCAAATGAGATGCATGAT GTGAAAGCTCTGCGAGGTGGAACTCAATTGCTTTTGGAATTTATGAAATACCACAGAAATGGTTTGAAAAATTTAAGTGA AGATACATGCACTGTGTTAGCAAGTCTTCTTGAGTCAGAAGTGATTGAAGAAGCTCTTGCCATAATGGAAGTACTTTCTG GGTATTGGTCTGATAAAGCTAACATTGCAGCTTCGAGTGCTCTCTCTTCTGTTTCAAAGTTCCTTGATTCTGGTAACAAA GAGTTCCAACGAAAAGCCATTAGAATGGTGTGTAAATTTTCATACAATGGCGAACTTTGTCCTTACATTGTATCTCTCGG GTGCATCTCGAAATTACTGCCGTGTTTTGAAGACAAGGCCCTTTCGAGAGACTGCATATGCATATTGAAAAACCTTTGTG ATACCGAAGAGGGTAGGATGTCTGTTGTTGAAACCAAAGGATGCATATCTTTTATTGTTGAAGTAATTGGGAGTGGCAGT GATGAGGAAAAAGAACTTGCACTTGCTATTGTGCTCTCTTTATGCTCTCAACGCTTGGAATACTGTGAGCTGGTTTTGTA TGAGGGTATTATACCTTCTCTCGTCATTATCTCCAACACAGGAAATGATAGCACAAAGGCGTATGCACTGGAACTGCTCC GGCAATTGAGGGAGGTTGACAGCTTTGACAATAGCGATTCCTCTGAGCCGAATCTCAACAACCCTCGAGATTCTAACAAT CGGTTCGAAGAAAAGAAACCGTCAAAGAAGTCGACATTTTTTAAGAAACTAGGTCTGTTCTCAAAACCCAGTTCACTTGC AGCAAAAAGCAAGAAATGA
Protein sequence (LotjaGi4g1v0119100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTDGCEVETLPYSFKVHCRMCTELKKLLERILRIFPLIEAARPRSSSGIQSLCSLNSAIDKAKQLLQHCSESSKLYLAM SGESILSKCQKAKRSLEKSLIQIQDMVPVMLAAEISRMIHDLGYVTFVLDFAEEEAGRVMRELLQQGHSASDKDSIENSD VKSLQFAVARLNITSSTAVVIEKRSIRKLLLNVRPNDQTKKMILKNLLYLLTKYRSFITGEQMEAYHLSEGPVTTENMGH VNHVMSEPDLNRDQNRTHAGELGRVTPPEEYTCPISLRLMYDPVVIASGVTYERMWIQKWLDEGNGICPKTKKKLVHRAL TPNVAIKDLIVKWCEINEVSISDPSRQVEDFRSWESSSNSIMSFGSSMNDLNLPMDFSGISLGSLDTSIGSGFSHVKASH GLNLMLVKTSEDSHRHQSTHDADLTRLSKLHDSQWDSQCQVIEDMKINFKCNYQASCSVSFENFIDPLTRFLSTANEMHD VKALRGGTQLLLEFMKYHRNGLKNLSEDTCTVLASLLESEVIEEALAIMEVLSGYWSDKANIAASSALSSVSKFLDSGNK EFQRKAIRMVCKFSYNGELCPYIVSLGCISKLLPCFEDKALSRDCICILKNLCDTEEGRMSVVETKGCISFIVEVIGSGS DEEKELALAIVLSLCSQRLEYCELVLYEGIIPSLVIISNTGNDSTKAYALELLRQLREVDSFDNSDSSEPNLNNPRDSNN RFEEKKPSKKSTFFKKLGLFSKPSSLAAKSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 751 | 740 | 0.0 | – | |
| PANTHER | 12 | 751 | 740 | 0.0 | – | |
| SUPERFAMILY | 263 | 341 | 79 | 1.9E-26 | – | |
| ProSiteProfiles | 266 | 340 | 75 | 32.501 | ||
| Gene3D | 267 | 341 | 75 | 1.3E-23 | ||
| Pfam | 268 | 337 | 70 | 2.8E-18 | ||
| SMART | 270 | 333 | 64 | 7.1E-28 | ||
| CDD | 273 | 313 | 41 | 6.37069E-19 | – | |
| Gene3D | 428 | 708 | 281 | 8.0E-21 | ||
| SUPERFAMILY | 429 | 697 | 269 | 6.48E-23 | ||
| Pfam | 483 | 653 | 171 | 9.0E-5 | – | |
| SMART | 576 | 614 | 39 | 2.4 | ||
| SMART | 615 | 656 | 42 | 240.0 | ||
| SMART | 658 | 698 | 41 | 110.0 | ||
| MobiDBLite | 701 | 730 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0119100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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