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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0119500 |
| Transcript ID | LotjaGi4g1v0119500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pimeloyl-[acyl]-carrier protein] methyl ester esterase; TAIR: AT4G36530.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9FFZ1|PPH_ARATH Pheophytinase, chloroplastic; TrEMBL-Plants: tr|I3SN35|I3SN35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0119500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17235204..17238073) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAGAAGGGGTTTTGCTGTGAAGGGGATCGTGGCTTCTGGAGTTTCAGTCATGGCTTCTACTCTAACTGCAGAACC TGAGCCAGCTCAAGGTTAGTTAGTTAGTTAATGATGACATTCAATGATTCAGGTTGAATGTTAATCTGTATATATAAATG GAAAACTGGAAACCCTTTTAAGAGAAGGAACTTGGACTTCTTCAGGTTCGGAAAGACTACCATTCAAACCAGAAGGGTAC AATTATTGGACTTGGAGGGGTCATAAAATACACTATGTTGTGCAAGGAGAAGGATCTCCTATTGTCCTTATTCATGGCTT TGGAGCATCTTTGTTCCACTGGAGGTTTGTTTTCTTTTTGCCTGTTTCTCATGAAATCTTATTGCTAAGAGAATATTGGA AGATATTGTGAAAAGCCACCTAAAGTCCGTTTGGATACGGACTAAAGAGCACTTATTGGAGCTTATCTGCTGGAGAAAGC ACTGAATAAGCTCTAAGAAGTTCTCTGGTTGGTACGCATCCAAACGGGCTGCTAGTCAATAACATCTCAGAAATTTTGGT TATTGATCGAGCACAATGATGTCGGGTGATTCATATAGCTGACCTCACTTAGTTAGATAAGAATTTCGTTGTTGTTTTAT TTCTTTAAGTTTTGCTTTAGCCCCCAAAAAATAATTGAAGAGCAGCAGCCAAACGAAGAAAAAAAAAAGGACTGGCCCCC CTTGAGTCCTTGAGTGGTTCTGTTATGTGCATGCAGTCTTGGTTAGAATTCAATGATTGTTATGGTGGCTTCAACTGTTT ATTTGATAAGTTAATTTTTGTCATTATGTCGAGAGTCATGTATCTGTATTTACATATGATTACCAGGTACAACATTCCAG AATTGGCTAAGAAACACAAGGTTTATGCCATAGACTTGCTTGGATTTGGGTGGAGTGAGAAAGCACTTGTTGATTATGAT GCCATGGTGTGGAAGGATCAAGTTGTGGACTTCATGAAGGAAATAGTAAAAGAACCAGCGGTTTTAGTTGGAAACAGGTA ATGACAGTAATACCTAGACTTACATCAGGGTATTATGCTGAAATACTGGATCCCTCTGTATTCCTAATATTTGCATAAGT TTTAGGTCTTTGTTTTCTCTGCATGGTTTCCCCTAATTCTATAAACTTTCTCTGTTGTGGCATACACTAGTTGGCCTCTC TTTCAAGGCAAGCCCTAGTAATCATGATATTTTCTTTCAGCCAAGTTAGCAACACAGATTTCATTAATTAAAACAAGATT TGCAAAAGTATCTTCACTATAGAAAATGAAATCTCAATATTCTGTTGTCAAATTATGCTGCCATAGTGTTTAGCTTTCCC TTACTTGGACGGTTGGACCTGTCAAATTAATTGATGATTTGTAGTGTCATGAACCAACTATGCCAAAAGTTTAAACTATT GGATGAAGGCATATTAATGATTTTATATTATATTTCTAAGACACAGAAGGTGGAACACTGGAACTTACAAATCTGTTTTA TGTTTAGTATTGACTTTAACCTATCTAGGCAAAATGATTAAAAATATGATGTTTATCTCCCAATCATGATTTTTTCAGCC TTGGAGGATTTACTGCTTTGATCTCAGCAACTGGGTTGCCTGAGCTTGTCAACGGAGTTGTTTTACTGAATTCTGCAGGA CAATTTGGTGATGGGAACAAGGAAAGTAAAACTTCTGAAGAAACATCTCTACAAAAGTTTATCCTAAAACCTCTAAAGGA AGTTTTCCAGCGTGTAGTTCTTGGATTTTTGTTCTGGCAGGCAAAGCAACCAGCTCGGATTGAATCAGTCTTAAAGAGTG TAGGTTACTTGCTATATCAACTCAGATTTCATTTAAAGCTTAACAGGTGTATATTAAGTTTAAAGTACGACTCCTAAGAA TTTCAATCAGAGTTCCATAACATATTAGTGAATAAGATCTCACTAAATAGGCTGATCAATCATATTTCTGTTTCCAAAAT GTGAGGGTCCTTTTGTGTTAAGAATCATATTCAGGAGGCTTCTGTCTCTTGTGGGATTGCTTTTCTCGTTTTAGCAATTT TCTTTTACTTAATTTTTCGTACAAGTTGGTTTGTAGTAAAAAACTATTCAATTTAATTTATTTCCACTTGATATAATGTT GAATGCATAATTTATCAACACAGGTGTATGTAAATTCTTCTAACGTGGATGATTATCTTGTGGAATCTATAATGAAGCCA GCTGAAGACCCCAATGCTGGAGAAGTTTATTACAGGTACATGACCATGTTTATGCCAATATTTTTGTGTGATCAAAGTTC TATTTTGGTTTTCATCTTGGTATAAAAGAAAAATTTCTCAGGCTTTAGCAATGTCAATGAATAGAGAGGAGGATGCTAGA GCTCTAAACCAATAAATCGACCATTTTTGTGGCCTATATTTAGTTCTGATTATTCAAACTCTGTAGCATTCTTGTTATAG AGGCTCTAATAGCATGTCATAAACCAACTATTCCAAAAACTTAAGCTATTGGGTAAATGACACATGAATGTTTTTATATT ATATTTCCAACATACTTCACTCCATGTTGTGTCCAGGTTAATGACGCGATTCATGACGAATCAGAGCAAGTACACTCTAG ATACTGTTTTAAGCCAACTCTCTTGCCCCTTGCTTTTAGTCTGGGGTGACCTTGACCCATGGGTTGGTCCAGCCAAAGCA AATAGAATCAAAGAGTTCTATCCAAAAACAACCGTTGTGAACTTGCAGGCAGGGCATTGTCCACATGATGAGGTACCAGA GCTTGTGAACAAGGCCTTATTGGATTGGTTGAGCACACTCACTCCTGAAGTGTCTCTCCAAACAGTTTGA
CDS sequence (LotjaGi4g1v0119500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGAAGGGGTTTTGCTGTGAAGGGGATCGTGGCTTCTGGAGTTTCAGTCATGGCTTCTACTCTAACTGCAGAACC TGAGCCAGCTCAAGGTTCGGAAAGACTACCATTCAAACCAGAAGGGTACAATTATTGGACTTGGAGGGGTCATAAAATAC ACTATGTTGTGCAAGGAGAAGGATCTCCTATTGTCCTTATTCATGGCTTTGGAGCATCTTTGTTCCACTGGAGGTACAAC ATTCCAGAATTGGCTAAGAAACACAAGGTTTATGCCATAGACTTGCTTGGATTTGGGTGGAGTGAGAAAGCACTTGTTGA TTATGATGCCATGGTGTGGAAGGATCAAGTTGTGGACTTCATGAAGGAAATAGTAAAAGAACCAGCGGTTTTAGTTGGAA ACAGCCTTGGAGGATTTACTGCTTTGATCTCAGCAACTGGGTTGCCTGAGCTTGTCAACGGAGTTGTTTTACTGAATTCT GCAGGACAATTTGGTGATGGGAACAAGGAAAGTAAAACTTCTGAAGAAACATCTCTACAAAAGTTTATCCTAAAACCTCT AAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTTTGTTCTGGCAGGCAAAGCAACCAGCTCGGATTGAATCAGTCTTAA AGAGTGTGTATGTAAATTCTTCTAACGTGGATGATTATCTTGTGGAATCTATAATGAAGCCAGCTGAAGACCCCAATGCT GGAGAAGTTTATTACAGGTTAATGACGCGATTCATGACGAATCAGAGCAAGTACACTCTAGATACTGTTTTAAGCCAACT CTCTTGCCCCTTGCTTTTAGTCTGGGGTGACCTTGACCCATGGGTTGGTCCAGCCAAAGCAAATAGAATCAAAGAGTTCT ATCCAAAAACAACCGTTGTGAACTTGCAGGCAGGGCATTGTCCACATGATGAGGTACCAGAGCTTGTGAACAAGGCCTTA TTGGATTGGTTGAGCACACTCACTCCTGAAGTGTCTCTCCAAACAGTTTGA
Protein sequence (LotjaGi4g1v0119500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRGFAVKGIVASGVSVMASTLTAEPEPAQGSERLPFKPEGYNYWTWRGHKIHYVVQGEGSPIVLIHGFGASLFHWRYN IPELAKKHKVYAIDLLGFGWSEKALVDYDAMVWKDQVVDFMKEIVKEPAVLVGNSLGGFTALISATGLPELVNGVVLLNS AGQFGDGNKESKTSEETSLQKFILKPLKEVFQRVVLGFLFWQAKQPARIESVLKSVYVNSSNVDDYLVESIMKPAEDPNA GEVYYRLMTRFMTNQSKYTLDTVLSQLSCPLLLVWGDLDPWVGPAKANRIKEFYPKTTVVNLQAGHCPHDEVPELVNKAL LDWLSTLTPEVSLQTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 335 | 335 | 6.9E-190 | – | |
| PANTHER | 1 | 335 | 335 | 6.9E-190 | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 336 | 311 | - | – | |
| Gene3D | 38 | 332 | 295 | 9.3E-62 | ||
| SUPERFAMILY | 44 | 324 | 281 | 1.18E-62 | ||
| Pfam | 64 | 318 | 255 | 8.7E-22 | ||
| PRINTS | 87 | 102 | 16 | 3.3E-8 | ||
| PRINTS | 131 | 144 | 14 | 3.3E-8 | ||
| PRINTS | 145 | 158 | 14 | 3.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0119500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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