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LotjaGi4g1v0123300.1

Overview

Field Value
Gene ID LotjaGi4g1v0123300
Transcript ID LotjaGi4g1v0123300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Beta-galactosidase; TAIR: AT4G36360.1 beta-galactosidase 3; Swiss-Prot: sp|Q9SCV9|BGAL3_ARATH Beta-galactosidase 3; TrEMBL-Plants: tr|I1JCK7|I1JCK7_SOYBN Beta-galactosidase; Found in the gene: LotjaGi4g1v0123300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:17840789..17846951) extracted from Lotus japonicus Gifu genome v1.2.

ATAAGATCAAATATGCTACTAATTTATAGCATTGCCGATCTAGGATAAATAAATGTAGACATACAACTTCCATGAACAAT TTCCACTTTCCACACTTTTTTCACAGCTATACTCTTTCTCTTTCTCTCTCTATTTGGTGGCAAATATGAGTGAACTTTGT AGTAACTGACAGCAACACAATGCCACAACACTTATAAATTGGCTAATTCCTCTCAGATCGGTGCATCCATCAAGGAATGG ACCCTGTTGCTGCTGTCACCATTCAACCATTTTCCCACTGAAACCAAAATCACGAGTCTAGTGAAAATTTCTTGCTCTCC CTCTACCATTTCTCTTCCTGCATTTCATTCAGACTACATCTTCATCAAGAGAAAACCATGGAAACCACCTCGTTTTCCAA ATTGGTGGTTGCATTTTGCTTGGCCTTGTGTTTTGGCTCTCAGTTGATTCACTCCACTGTCACCTATGACAGAAAAGCCA TTCTCATCAATGGCCAAAGGAGAATCCTTCTCTCTGGTTCCATACATTATCCCAGAAGTACCCCTGATGTAAGTTTCTTC TTCTTCTCTCCATTTCCCATTTTCCCATTTTCCTTCAAAGAAAAATATTAGAACTTTCTCTGCTTCCCCTGTTTCCCCTG TTTTCCCCTGTTCCTGATTCTCTTGAACAATGATCTCTCTATTTGCAGATGTGGGAAGATCTGATTCAGAAAGCCAAAGA AGGGGGTCTTGATGTAATTGAAACCTATGTCTTCTGGAATGTTCACGAGCCTTCTCCTGGCAATGTACTTCACTCTCTCT TCCAAATTCTCTGGTTTTTGCTCTGTTTTCTAACCTCTGTTTCTCACTGATTTGTGCATGCAATTGAATTTGCAGTACAA TTTTGAAGGAAAGTATGATCTGGTGAAATTCATAAAGACAGTTCAAAAAGCAGGGCTTTATGCTCATCTCCGCATTGGAC CTTATGTCTGTGCAGAATGGAATTTTGGGTACCTTTCATCTCTCACTATCTTCCTCCACATTTTTTTACCATGAATTTTC TTTTATTTAGAACTTTTTTTACATATACCCTTTTTCCGGTGATTATTTATTCAAGATTATTCTTGTTTTTTTGTAGAGGA TTTCCTGTTTGGCTGAAGTATGTTCCTGGCATAAACTTCAGAACTGACAATGAACCTTTCAAGGTCTCATATTTATACAC ATAACACATTATATAAAATTCCTAAAAACATATTTTATCAGATTTTGGCTCCTGAACTTCAATCTGACATTGTTTTGTTT CGTTTTCAGAGGGCGATGCAAGGGTTCACTGAGAAGATTGTTGGAATGATGAAGAGTGAGCAACTCTTTCAATCCCAGGG TGGACCTATCATACTCTCTCAGGTACCAATTTTCATTGGACTAGTGCAGTTCTATCTAGTTCGAACAGGATTGCCTCAGT AGATGATACGTGTGGTTAAAAAAATAGTGGCTCAAAACTTTTCACTCTAGATCTAACTGTAAAGATGACACATTCACTAT ATGTTGTTTCAGATTGAGAATGAGTATGGGGCACAGAGTAAGTTATTTGGAGCTGCAGGCCAAAACTATGTGAATTGGGC AGCAAAAATGGCTGTAGAAATGGGAACTGGTGTCCCTTGGGTGATGTGTAAGGAAGATGATGCACCAGATCCAGTGGTGA GAGAGAACTCTCACTTACTATTATTTGATCTTTTGATTATTTTATTTTCTGAGAAATTTAACATCAAAATTGAAAATTCA TAAAGAAAATACAATGCTGCCGTACACGCAACTAGTTGTAGTTCATTTCTTCACTTAAACTAACTAATATGGTAGTTAAA TGTTTTTGTCTTGTGGTGGTAATAGATAAACACGTGTAATGGCTTCTACTGTGACAAGTTTACTCCAAATAGAGCCTATA AGCCTACAATTTGGACTGAAGCTTGGAGTGGCTGGTAAGTTTTTTCATTTTTGTATTGTCACACTAAGAATTGGAACCTG AAAGTAAAAAATAGCCTGCATAACTTTTCTGTTAAATATGAAGGTTTACAGAATTTGGAGGTCCAATTCACAAAAGACCT GTTCAGGATTTGGCCTTTGGAGTTGCTAGATTTGTAGCAAGAGGAGGGTCTTTTGTAAATTACTACATGGTTAGTCTGCT TAAAATTGGATTAAAAAAAGGAAAATTTTGAACATGCTTACAACACCTATTGTAATTAAATTAGCCTAAATTGTTTTGCA TTTACCTGTAGTATCATGGAGGAACCAATTTTGGACGAACCGCTGGAGGACCTTTCGTCGCCACGAGTTATGACTATGAT GCTCCATTAGATGAATATGGTGAGAACTGAAATCTTTGACTTTTACCTTTTAAGTATTTGTTTGAATGTCAGTTGAATGC AATGTAATCAGACTTTCATTGCAATCTTTCAGAAGAGTTTTGTTCCCCTTTTTTGCCTTAAAGTGTGTGCATAACATTTG CGTAAAAATAGATATAGTCTTGAAGATTTATAGTATTTATTGATCTGGTGACAACAAAAATCGTACATGAATTATGGCAG ATAGCTATGCTAATTAAGTAATGCCAGTCACTACATTTTTTTTTCTTAGCAACTTCCGATGCATGAATCTTAACAGATTT TAAGTACAAAAGCTTGTTACTCTTAACTTAATGATTAACTGAGTTCTTCTACTATAAAACAATGCAGGTTTGATTAGGCA ACCAAAATATGGTCATCTAAAGGAGCTTCATAGAGCTATCAAGATGTGTGAGCGAGCTTTGGTTTCAACTGATCCAATTA TTACTTCATTAGGGGACTTCCAACAGGTTTCAACTCAGTTAAAAATTATTCATCTTTCTACATGTTATTTTAGCTTATTA ACTAATCCTAGAGGATATGCAACTTTTCCAGGCTCATGTGTACTCTACAGAATCTGGAGATTGTGCTGCTTTTCTCTCAA ACTCTGATGCAAAATCCTCTGCTAGAGTGATGTTCAACAACATGCATTATAGCTTACCTCCTTGGTCTGTCAGCATCCTC CCTGATTGTAGAAATGTTGTCTTCAACACAGCAAAAGTAAGTAACAAATTTATGACATATTTTGAACCTGCTTCTGAGGA TACAATTTCTTGGACTTGATTTATTAGCAGAAAATTTAGTCCAACCAATGAATCCTGCTGTTTTAGGTTGGAGTGCAAAC GTCTCAGATGCAAATGTTGCCAACGAATAATCAAATGTTCCCATGGGAGAGTTTTGATGAAGAAATTTCTTCTCTGGAGG ATGACAGCGCCACAATCACTGCCTCTGGTCTCTTAGAACAGATAAATGTAACACGGGATACGAGCGATTATCTTTGGTAT ATAACTAGGTAAGCCTGACATCCTAGGTATTTTAGAATTTCCCTTTGATAAATGAAATAGATTTAGAAACCATGTTGAAT ACAATTATTCTGCAATTAATTATATTTCTTTTCTTCAGTGTTGATGTAGGTTCATCTGAATCCTTTCTACATAAAGGTGA ACTCCCAACTCTCATGGTTCAGTCTACAGGCCATGCTGTGCATGTTTTCATCAATGGTCAACTTTCTGGTATGTAAATTT ACTTTTTTTTTTTTCTTTTAGACCTCCCTTCTAGCTGATTAGTATAAAGTGAATGTGATATATGATTCTCAAACCAGGTT CTGGTTATGGAACGAGGGAGAGTAGGAGGTTCTTATATACTGGCAAGGTCAACCTTCATGCTGGAAAAAACAGAATAGCT CTGCTCAGTGTTGCCATTGGACTTCCTGTAAGTTCTGTTTCTCTCTATTTTCCAAATCTTATGTTCAATAAATTGAGATT ATGAAAGCCGTGGAACTAGGCTCCTTGAGATTTAAATCCATCTAATCCATCTATTTTTAAAAAAGAAAACAATTAACAAT GGCTAAATTCTTTGTCTGCTAATTATATCACTGACAAAGTGCTTTTCTGTTTTCTGCTGTCAAAGAATGTGGGAAGTCAT TTTGAGACATGGAACACAGGAATCCTAGGCCCAGTTGCACTCCATGGACTTGACCAGGGAAAATGGGACTTGTCCGGGCA GAAATGGACATATCAGGTTGGTCTTACAGGCCGTTTGGATGCGGACTAAAGAGCACTTGTGGGAGCTTATGAACACTTTA TAGGCTCCCGCATCCAAATGAGCTCTTACTTTAGAAATTTGCTTAAGTTAGCTCACTTTTGAAAAGAAAAACCTTACTAA GGATTGCTTCTAAACAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCTTCTCCAAACAGTATCTCTTCTGTTGACTGG ATGCAGTCCGCAATAGTTGTACAAAGAAACCAACCATTAACATGGCATAAGGTAAATTTATACAGAAATGTGCTCAAGTT TGACTACTAAAAACAAAATATTAGCTTCAAAACATATGAAGTTTAACTGTGAATCGTGCAGGCCTATTTCGATGCTCCGG AAGGAGATGAACCATTGGCATTGGACATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATTGGAAGA TATTGGCTTGCATTTGCTTCTGGTGATTGCAATGGTTGTAACTATGCTGGGTCATTTAGACCAACAAAGTGCCAACTTGG TTGTGGCCAACCAACCCAACGATGGTGAGTATTGCTAAATGCTAATACAAGCAATGAACTATCTTAAAATTTGGATTAGG TCTAACTCTACCCTAAAAGCTAGCTTATGGGTGAGGGTTAGTCTAATCCTATATAAGGACTTATTTGGCTATACCTCTAG TTATTGTGAGATTTCTCAACAAACTACAATATGCAATACTCACTCAGGCGTGGAATATCTTATTACTACATTTTGTACAA AAAAATTCAGGTACCATGTCCCCAGATCTTGGTTAAAGCCAACTCAAAATCTATTGGTTATCTTTGAGGAACTTGGGGGA GACCCTTCAAAAATCTCACTTGTGAAGAGATCAGTGAGCAGTGTATGTGCTGATGTATCAGAGTTCCACCCAAATATTAA GAATTGGCACATTGAGAGCTATGGGAAGTCACAAGAGTTCCGTGCACCAAAGGTTCACTTGCACTGCAGTCCTGGCCAGA CTATCTCTTCCATTAAATTTGCAAGCTTTGGAACTCCTTTGGGGACTTGTGGGAACTATGAGCAAGGAGCTTGCCATTCA CCCGCATCCTATGCCATTTTAGAGAAGGTAAATTTATCATACCTCTCGATTTCGCAATCCACTACATTGAATCTTAGTGC ATGTTTGGAAAACCTTCTATGATTTATTCTAAAGTTATAATCAATTCTGGGAAGAAGCTTCTGTTAGTAACTTTTGGGTA CCAGAATTGATTCTGAGAAAATAGAAGTTCATCCAAACACACATATAGTTAGTGTTTCTGTACAATATAGCTAACCTGTG CGCTTTCATTTTTCACAGAAATGTATAGGAAAGCCAAAATGCATAGTCACTGTAACAAACAGCAACTTTGGGCAAGACCC TTGTCCCAATGTAATGAAGAGGTTATCTGTTGAAGCTGTTTGCACTCCAACAAATTGGAGGGGTTGATAAAAGGCAGCAC CCTTTTAAGTGTAGTGTGTAGTGACTTAAACTGCAAGGAGAAAAAAGGAATGAGTAATAAAAAGGAGTATAGTTAAAGCT GAAAGTAGTTCACTAGATTGAGTGCCATAGTATAGAAGTATGAACGTGACACTTAGTTTGAAATTGTATTTGGTGAGATC AATGGGGTTTGTATAAATCACTCATAGTTAGATAGGCGAATCTGAAACCAGAGGGTCTGAAATTTGGATCCTTGTGTGTG AATTTAGATAACCAGTCCCCGAGCTTTTAACCGGAAATGGGCACTGGGAAGAGAAAAAATTAAGCTGGTTTGATTTGTGT TTTTGTTTGTGTTAATGGGGTGACTCATAACACAAATCAGGTTCAAGTCGGGAGCGGATCCTACTGTAACCATCGTTTGA TGAGGTTCATGGTAATAGAAGTTCATTGTTCTTCTGTCTATGTTTTCTTTTGTGTTTTTTTAGTTTAAACCACAAATACC CTCAATTGAAACAATTTTGTTCGAGCTAGGTATATTTACTATGAAAAACAAAACTCTTTTTACTAAGTAAGGCAATGGTG ATG 

CDS sequence (LotjaGi4g1v0123300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAACCACCTCGTTTTCCAAATTGGTGGTTGCATTTTGCTTGGCCTTGTGTTTTGGCTCTCAGTTGATTCACTCCAC TGTCACCTATGACAGAAAAGCCATTCTCATCAATGGCCAAAGGAGAATCCTTCTCTCTGGTTCCATACATTATCCCAGAA GTACCCCTGATATGTGGGAAGATCTGATTCAGAAAGCCAAAGAAGGGGGTCTTGATGTAATTGAAACCTATGTCTTCTGG AATGTTCACGAGCCTTCTCCTGGCAATTACAATTTTGAAGGAAAGTATGATCTGGTGAAATTCATAAAGACAGTTCAAAA AGCAGGGCTTTATGCTCATCTCCGCATTGGACCTTATGTCTGTGCAGAATGGAATTTTGGAGGATTTCCTGTTTGGCTGA AGTATGTTCCTGGCATAAACTTCAGAACTGACAATGAACCTTTCAAGAGGGCGATGCAAGGGTTCACTGAGAAGATTGTT GGAATGATGAAGAGTGAGCAACTCTTTCAATCCCAGGGTGGACCTATCATACTCTCTCAGATTGAGAATGAGTATGGGGC ACAGAGTAAGTTATTTGGAGCTGCAGGCCAAAACTATGTGAATTGGGCAGCAAAAATGGCTGTAGAAATGGGAACTGGTG TCCCTTGGGTGATGTGTAAGGAAGATGATGCACCAGATCCAGTGATAAACACGTGTAATGGCTTCTACTGTGACAAGTTT ACTCCAAATAGAGCCTATAAGCCTACAATTTGGACTGAAGCTTGGAGTGGCTGGTTTACAGAATTTGGAGGTCCAATTCA CAAAAGACCTGTTCAGGATTTGGCCTTTGGAGTTGCTAGATTTGTAGCAAGAGGAGGGTCTTTTGTAAATTACTACATGT ATCATGGAGGAACCAATTTTGGACGAACCGCTGGAGGACCTTTCGTCGCCACGAGTTATGACTATGATGCTCCATTAGAT GAATATGGTTTGATTAGGCAACCAAAATATGGTCATCTAAAGGAGCTTCATAGAGCTATCAAGATGTGTGAGCGAGCTTT GGTTTCAACTGATCCAATTATTACTTCATTAGGGGACTTCCAACAGGCTCATGTGTACTCTACAGAATCTGGAGATTGTG CTGCTTTTCTCTCAAACTCTGATGCAAAATCCTCTGCTAGAGTGATGTTCAACAACATGCATTATAGCTTACCTCCTTGG TCTGTCAGCATCCTCCCTGATTGTAGAAATGTTGTCTTCAACACAGCAAAAGTTGGAGTGCAAACGTCTCAGATGCAAAT GTTGCCAACGAATAATCAAATGTTCCCATGGGAGAGTTTTGATGAAGAAATTTCTTCTCTGGAGGATGACAGCGCCACAA TCACTGCCTCTGGTCTCTTAGAACAGATAAATGTAACACGGGATACGAGCGATTATCTTTGGTATATAACTAGTGTTGAT GTAGGTTCATCTGAATCCTTTCTACATAAAGGTGAACTCCCAACTCTCATGGTTCAGTCTACAGGCCATGCTGTGCATGT TTTCATCAATGGTCAACTTTCTGGTTCTGGTTATGGAACGAGGGAGAGTAGGAGGTTCTTATATACTGGCAAGGTCAACC TTCATGCTGGAAAAAACAGAATAGCTCTGCTCAGTGTTGCCATTGGACTTCCTAATGTGGGAAGTCATTTTGAGACATGG AACACAGGAATCCTAGGCCCAGTTGCACTCCATGGACTTGACCAGGGAAAATGGGACTTGTCCGGGCAGAAATGGACATA TCAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCTTCTCCAAACAGTATCTCTTCTGTTGACTGGATGCAGTCCGCAA TAGTTGTACAAAGAAACCAACCATTAACATGGCATAAGGCCTATTTCGATGCTCCGGAAGGAGATGAACCATTGGCATTG GACATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATTGGAAGATATTGGCTTGCATTTGCTTCTGG TGATTGCAATGGTTGTAACTATGCTGGGTCATTTAGACCAACAAAGTGCCAACTTGGTTGTGGCCAACCAACCCAACGAT GGTACCATGTCCCCAGATCTTGGTTAAAGCCAACTCAAAATCTATTGGTTATCTTTGAGGAACTTGGGGGAGACCCTTCA AAAATCTCACTTGTGAAGAGATCAGTGAGCAGTGTATGTGCTGATGTATCAGAGTTCCACCCAAATATTAAGAATTGGCA CATTGAGAGCTATGGGAAGTCACAAGAGTTCCGTGCACCAAAGGTTCACTTGCACTGCAGTCCTGGCCAGACTATCTCTT CCATTAAATTTGCAAGCTTTGGAACTCCTTTGGGGACTTGTGGGAACTATGAGCAAGGAGCTTGCCATTCACCCGCATCC TATGCCATTTTAGAGAAGAAATGTATAGGAAAGCCAAAATGCATAGTCACTGTAACAAACAGCAACTTTGGGCAAGACCC TTGTCCCAATGTAATGAAGAGGTTATCTGTTGAAGCTGTTTGCACTCCAACAAATTGGAGGGGTTGA 

Protein sequence (LotjaGi4g1v0123300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METTSFSKLVVAFCLALCFGSQLIHSTVTYDRKAILINGQRRILLSGSIHYPRSTPDMWEDLIQKAKEGGLDVIETYVFW NVHEPSPGNYNFEGKYDLVKFIKTVQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGINFRTDNEPFKRAMQGFTEKIV GMMKSEQLFQSQGGPIILSQIENEYGAQSKLFGAAGQNYVNWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDKF TPNRAYKPTIWTEAWSGWFTEFGGPIHKRPVQDLAFGVARFVARGGSFVNYYMYHGGTNFGRTAGGPFVATSYDYDAPLD EYGLIRQPKYGHLKELHRAIKMCERALVSTDPIITSLGDFQQAHVYSTESGDCAAFLSNSDAKSSARVMFNNMHYSLPPW SVSILPDCRNVVFNTAKVGVQTSQMQMLPTNNQMFPWESFDEEISSLEDDSATITASGLLEQINVTRDTSDYLWYITSVD VGSSESFLHKGELPTLMVQSTGHAVHVFINGQLSGSGYGTRESRRFLYTGKVNLHAGKNRIALLSVAIGLPNVGSHFETW NTGILGPVALHGLDQGKWDLSGQKWTYQVGLKGEAMNLASPNSISSVDWMQSAIVVQRNQPLTWHKAYFDAPEGDEPLAL DMEGMGKGQIWINGQSIGRYWLAFASGDCNGCNYAGSFRPTKCQLGCGQPTQRWYHVPRSWLKPTQNLLVIFEELGGDPS KISLVKRSVSSVCADVSEFHPNIKNWHIESYGKSQEFRAPKVHLHCSPGQTISSIKFASFGTPLGTCGNYEQGACHSPAS YAILEKKCIGKPKCIVTVTNSNFGQDPCPNVMKRLSVEAVCTPTNWRG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 8 8 -
SignalP_EUK 1 26 26 -
Phobius 1 26 26 -
PANTHER 8 843 836 0.0
PANTHER 8 843 836 0.0
Phobius 9 19 11 -
Phobius 20 26 7 -
Gene3D 23 343 321 6.5E-113
SUPERFAMILY 25 344 320 1.41E-106
Phobius 27 848 822 -
Pfam 35 339 305 1.9E-120
PRINTS 38 55 18 8.4E-85
PRINTS 59 77 19 8.4E-85
PRINTS 114 133 20 8.4E-85
PRINTS 171 186 16 8.4E-85
ProSitePatterns 173 185 13 -
PRINTS 250 265 16 8.4E-85
PRINTS 287 302 16 8.4E-85
PRINTS 307 323 17 8.4E-85
Pfam 347 418 72 1.5E-28
SUPERFAMILY 402 574 173 2.07E-29
SUPERFAMILY 584 748 165 5.59E-29
Gene3D 594 733 140 3.5E-14
PRINTS 620 634 15 8.4E-85
PRINTS 647 663 17 8.4E-85
Gene3D 753 847 95 8.4E-14
ProSiteProfiles 760 842 83 17.864
Pfam 764 841 78 1.1E-21

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Molecular function Carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0123300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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