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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0130100 |
| Transcript ID | LotjaGi4g1v0130100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G51280.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SD20|MS5L2_ARATH Protein POLLENLESS 3-LIKE 2; TrEMBL-Plants: tr|A0A0B2PAU9|A0A0B2PAU9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0130100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19058790..19061141) extracted from Lotus japonicus Gifu genome v1.2.
CCAACGGCTACTTTTTAACGGCTACCTTTCGAATTTAAAATAAAACCTGAGCATTTTCCACCTTCTTACAAATCAATTCT TTGATTCTTTCTCTTCCACTCTCTCCCTCGTTCTTCTGCTTCTGAACACTATCCATCATCATTCCCCTGAAGAATTGAAT CACTATGTTGCAAGAAATGTGGAATGCTCCCCCTGGTTTCAGACCCAGTAAGTCTGCACCTTCTTCTCCAGCCAAGCCTC TTGGTGTTCCAAGAACTCGATCTGAATCGTTCCACATAGCCCACAAGGTCCCAGTTGGAGATACTCCTTATGTTAGAGCA AAAAATGTTCAGGTAATTTACTAGATTTTCTGGGTTTTCTTTAATTTTCATTTCTGAGTTATTATGTGTTAGTGAAGGAC ATTGTTCATGTTCTAATTTTCAAGTTTTTTATGTTCAGTTGGTTGAAAAGGATCCGGAGAGAGCAATTCCACTGTTCTGG GCAGCCATTAATGCAGGGGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTGATGAAGCAGCAGAATCGATCTGA AGAAGCCATTGAAGCTATTAAATCACTTCGAAGTAGATGTTCAGATCAAGCTCAAGAGTCTCTTGATAATATCCTCTTGG ATCTTTACAAGGTAATTCACTGAACAGTGAACACAATTATTAATTTTTATGAACCAGTCCTTGCATCATCACTAGCAATG TTGACAAAATTGAAGTGTTTTTATTACAGAGATGTGGGAGACTTGATGATCAAATTGCTCTTTTGAGGCACAAGCTGTAC TTGATTCAACAAGGGTTGGCTTTCAATGGAAAGCGCACGAAAACTGCGAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGT GGAGCAAGAAGCCACTAGATTGCTGGTAAGAATTTCACATCTTGATTAACTTATTTTGTTCCCAGAATTGATTATGGCTA AATCAATTGTAGAATTTGTTTTCAAACATGAAACTGAATTGAACTTGCTGAATGATGTAGGGAAATCTGGGATGGGCACT GATGCAGCAGAGCAACTACATGGAAGCAGAAGAAGCTTATCGGCGCGCGCTTTCGATTGCTCCAGATAACAACAAGATGT GCAATCTGGGTATCTGCTTGATGAAGCAAGGGAGAATTGTTGAGGCAAAAGAAACACTTTGTAGGGTGAAACCCGCGGTT CATGACGGCCCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAGGACCTTCAGTCTGA GAGGATGAACATAGGAGGAGGGGATAGGGTTGAACAAAGAAGACTCTTTGAAGCTTTTCTGGGATCTTCATCAATCTGGC AGCCTCAGCCTTGCAAGGATCACACCTCAAATTCAGTCAAAACAACACAAGATGAATTTGCAGATGAGAACATCAATTCC AACATCATGACAAAAAATCACACACAGCAGCAGCAGAAAAGCAAACAGGCTGCAAGCACTCTGGGGAACTCTCTGAATGT CACAGCTCCACCATTTTATACATCGAAACCTTTGGTAAGAGAACCGCCAAATGAGAATCATTTCGCGGAGACGCTTAAGA GAACAAGGTCTGGAAATGCTGCAGGGTCAATGAGAGTCAATGATGTGGGGGATTTCAACAAGGTGAATATGGAATTAGGG GTGCCACTGCCAGAGAACAAAACAAGAAGGCTCTCATCAGAGGATAACAATGAGAAGAACAAGATGGTAGACTTGTTACC AGATAACAAGGACTTTGAAGATGCTATTCTTGCTGCAATTTTGGAGCCTGCAGCAGAGAAAGCAGCCAATGACAAGATTT TCCAGAAGAAAACTGATAAGAGGCTTAAGGTTTTTCAAGATATTACATTGTCTTTGAGTCCAAGGGCCTGAGCTAATTTG GTTTATTGAATTAGTTTTCAATAACTTAGTTTTAGAATTGGAGATGAACTTGGTCTCCATTTGTTGAGCTTCTTTTTCTG TAGAGGAAGAAGTGTGCTACGTTGTGTTGGCAGTTTCACGGATAGGAGTAGCTGCACCAACACTTCACGAGTCCTCAATT GTTTTATTATTTATCTTTTATTTATTTTGTAATGCCTTGAAACTAGGCACATCATTGACTTCAAAATAAGTTGACAGGAG TTACTTGAAATCAAATGAGTTAGTTCATTGACAAAAAGGTCTACTTCTTTCTGTGCCTCACCCAAAAAGGATTAGCAAAT GCTACATAGAATCAAGTGAAGTGGTGATTCTAAGTTTTGACTTTTGAACAAGCAATTAGTTCCTAAATATAAGACATTTA ACAATAATCTAGCAAAAAGTATTCTACTCATC
CDS sequence (LotjaGi4g1v0130100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAAGAAATGTGGAATGCTCCCCCTGGTTTCAGACCCAGTAAGTCTGCACCTTCTTCTCCAGCCAAGCCTCTTGG TGTTCCAAGAACTCGATCTGAATCGTTCCACATAGCCCACAAGGTCCCAGTTGGAGATACTCCTTATGTTAGAGCAAAAA ATGTTCAGTTGGTTGAAAAGGATCCGGAGAGAGCAATTCCACTGTTCTGGGCAGCCATTAATGCAGGGGATAGAGTGGAT AGTGCTTTGAAAGATATGGCTATTGTGATGAAGCAGCAGAATCGATCTGAAGAAGCCATTGAAGCTATTAAATCACTTCG AAGTAGATGTTCAGATCAAGCTCAAGAGTCTCTTGATAATATCCTCTTGGATCTTTACAAGAGATGTGGGAGACTTGATG ATCAAATTGCTCTTTTGAGGCACAAGCTGTACTTGATTCAACAAGGGTTGGCTTTCAATGGAAAGCGCACGAAAACTGCG AGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGGGAAATCTGGGATGGGCACTGAT GCAGCAGAGCAACTACATGGAAGCAGAAGAAGCTTATCGGCGCGCGCTTTCGATTGCTCCAGATAACAACAAGATGTGCA ATCTGGGTATCTGCTTGATGAAGCAAGGGAGAATTGTTGAGGCAAAAGAAACACTTTGTAGGGTGAAACCCGCGGTTCAT GACGGCCCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAGGACCTTCAGTCTGAGAG GATGAACATAGGAGGAGGGGATAGGGTTGAACAAAGAAGACTCTTTGAAGCTTTTCTGGGATCTTCATCAATCTGGCAGC CTCAGCCTTGCAAGGATCACACCTCAAATTCAGTCAAAACAACACAAGATGAATTTGCAGATGAGAACATCAATTCCAAC ATCATGACAAAAAATCACACACAGCAGCAGCAGAAAAGCAAACAGGCTGCAAGCACTCTGGGGAACTCTCTGAATGTCAC AGCTCCACCATTTTATACATCGAAACCTTTGGTAAGAGAACCGCCAAATGAGAATCATTTCGCGGAGACGCTTAAGAGAA CAAGGTCTGGAAATGCTGCAGGGTCAATGAGAGTCAATGATGTGGGGGATTTCAACAAGGTGAATATGGAATTAGGGGTG CCACTGCCAGAGAACAAAACAAGAAGGCTCTCATCAGAGGATAACAATGAGAAGAACAAGATGGTAGACTTGTTACCAGA TAACAAGGACTTTGAAGATGCTATTCTTGCTGCAATTTTGGAGCCTGCAGCAGAGAAAGCAGCCAATGACAAGATTTTCC AGAAGAAAACTGATAAGAGGCTTAAGGTTTTTCAAGATATTACATTGTCTTTGAGTCCAAGGGCCTGA
Protein sequence (LotjaGi4g1v0130100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVD SALKDMAIVMKQQNRSEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTA RSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIVEAKETLCRVKPAVH DGPRGSDSHLKAYERAQQMLKDLQSERMNIGGGDRVEQRRLFEAFLGSSSIWQPQPCKDHTSNSVKTTQDEFADENINSN IMTKNHTQQQQKSKQAASTLGNSLNVTAPPFYTSKPLVREPPNENHFAETLKRTRSGNAAGSMRVNDVGDFNKVNMELGV PLPENKTRRLSSEDNNEKNKMVDLLPDNKDFEDAILAAILEPAAEKAANDKIFQKKTDKRLKVFQDITLSLSPRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 3 | 472 | 470 | 1.1E-199 | – | |
| PANTHER | 3 | 472 | 470 | 1.1E-199 | – | |
| Gene3D | 50 | 286 | 237 | 2.7E-20 | ||
| SUPERFAMILY | 59 | 232 | 174 | 6.32E-13 | ||
| Coils | 89 | 109 | 21 | - | – | |
| ProSiteProfiles | 176 | 209 | 34 | 11.358 | ||
| ProSiteProfiles | 176 | 209 | 34 | 12.056 | ||
| SMART | 176 | 209 | 34 | 2.7E-6 | ||
| Pfam | 178 | 209 | 32 | 1.3E-8 | ||
| Coils | 246 | 266 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0130100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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