Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0130300 |
Transcript ID | LotjaGi4g1v0130300.1 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Rac-like GTP-binding protein; TAIR: AT2G17800.1 RAC-like 1; Swiss-Prot: sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1; TrEMBL-Plants: tr|F8TJT2|F8TJT2_LOTJA ROP6; Found in the gene: LotjaGi4g1v0130300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19070557..19076345) extracted from Lotus japonicus Gifu genome v1.2.
GAAATCCGAGTTTTATTGCGATTGACGCGCCACGGAAAATAGAAATAACACACAATTATGTAAAAAAAACGCACCAAAAC AATAAATAAATAATTGCAAGAAAATCAACAATAATAAATATTAACAACGAGACACAACACAGAGGGTAATGAAAATTTGT TGTCAAAGATTGGTTTCCTTAACGAACGCTTCAACAGCAAAATTTCCCGGGCATGAAGGGTTCGTGTGTCTCTCTCTCTC TCTTTGATCTCGATGCGTTTCAATTCCCATTTCCTCACGCGTAATTTCCATCTCCTCCAAAAGGGTTAGGGTTTTTTCTC AATTCAATTTTCTCTCTCTGCATTTCCCCCAATTCAGCTCAATTTTTTCCTTCCTTTTTGAGAATTGATTGATGGAAACT TTCTCGATTGTTTCCTTTTCCGGAGTACAGATGCGTCGTCGTCATTGATTCACCCCAAAATTGCATCATAAATTTGCAAT TGGAGGAGCACAATTTGGAAAACGTACGGGGTGTGAGTAACGTGTCTGTGTGTGAGTCATTAGGGTCCTCAGGTTGAAGA TCTGAGGCTTTTGCTTTTTGAGGTGAGAAGAAGAGTAAAAGGGTTCTCAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAA GAAGAAGATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCT CCTATACCAGCAACACCTTCCCCACCGTGAGTTTTTTCTTCCTACCCTTGAACATTTCTGAAATTTGGGTGATTTGATGA TTGTTGAATTTTATGAATGTTAAATGTAGCCAATGAGAAGAATTTCTGCGAATGGTTAATTTTTTTAGGGGAATTTGAGT TTCCCAATTTTGTTTTTGAATAGATGCTTAGATTTTGAGGGTGTGATAATTGTTTTGGGTGTTACAACATGATAAAATGA AAACTTTTCCTCTATTATTTGGGGTTTAAAATATGTAGTTTCCCTATAATTTTTCTATTTTAGATTGGAAGGAGGACTTC TTTTTGTATCATTGGAGGGCTTTGTAATGCCGTATATGAGATTGCATATTAATGTTTGTTGGGGAAATCAATGAGTATAG TCATAGATGAAGAAATCAATGTTTGAGGTGGCTTGTCTTATTTTTCTGCATGTGTAGTGTTGTGTCTTATTTTTCTGCAT GCGTTGTGTCTTTGATATCACGAAACGGAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTTCTGCCAAATGCAGTT TGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAAATGCTCGATAGTCGATATCACGAAACGAAACCCAC GAATCAATTTCTAAGCATTCTCCGTGTTTCCCGCCAAATGCAGTTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTT TTGTGAAAAATGCTTGATAGTCGATATCACGAAACGAAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTCCCGCCA AATGCAGTTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAATGCTTGATATCACACAACGAAACCCA AGAATCTATTTCTAAGCATTCTCCCTGTTTTCCGCCAAATGCAGTTTGCATCTTTTATTTTTTAATTGTTGGTAGTATGT TTTGTGAAAAATGCTCGATATCACGAAACGAAACCGTAGAATCTATTTCTAAGCATTCTCCGTGTTTTCCGCCAAATGCA GTTTGAGGCTTTGAACCATTAACCATGTTGTTTTTTTGCCAAACACCAATACTGTTTTGCCTCGTTATCATTCTTAACTT TTGTTAGTTTTTATTTCCATACTGAATAGCTGTGTTGCACGGGTACGGGTACGGGTACGGTACCCGGTACGGGTACGGTA TTGGGTACGCGGTACGCGATTTTTGAAAAAACAGGGGTACGGGTACGTTAGATACATGTGTATCCTATCTTAATTATTTC TTCAGATTTGAAGTCAATTTTGGCTGTTTGCTACCAAATTGAATACAGGGCAAGTGGGCAACCTCATCTTAATGCCACAT ATGCCATACCCACTTTTTCACTCACACACTCATCCTTCAGGGTTCTGTCTCTCTCACTTTTTCCTCTTTCAAGCCTTCAC TCACTCACTCACCTCACGCCCTCAAACTCACAGCCACACATCACACACTCAAATTCAGTCTTCACTCACCCACCGCCTCA CCCACTCTTCACTCACTCACTCACTCACTCATGACTCACCCACCGGGCACCGCCTCACCCCCTCACCCACAGCGTCCCTC AACCCTCTTCACTCAGGTGATTACCCATTGCCCTCACAGTATTACACAACCCTCTTCACTCAAACACTCAGAGTCACAAT TGATCAACAGAGCCAGAGGACATAGTCAAAGAAAGTTTACCTCAGAGAGAAAGAGAAAGAGAAAGGGAGCAATTGATTCG AGTAGGAAGCCGTGAAGACTGAAGGGAGAAATCAAGCAACAAGCAATCCAGTTTAGGGTTTCTTTATTTACTAAAGTCAT GGCTGCTTCTCTTTTCTTCCTTCTTTTCACGCGATTTAGGGTTCTGTTTCTCTTTTTTTTTTTTTTTAAAGGCCAAAACG ACGTCGTTTTGGCCCGTAACCCCCCCCCTTTTTTTTTTTGTAACGGGTACGTACCGGGTACGTACCGTATGCGTACCCGA CGCGTATGCGTACCGGGTACGTGGCCAATTTGGCCGTACCCATGCATCAGAGCTGAATAGTAGCTCTGATGTTTGTTTTG TTTAAAACCTTTAATTTGTATATCTTTTTGAAGAGTATGGCAATTTACTTGAAATTATGTATTGGGTTAGAGAAAGAAAA TACTGAGATTGTGGTGCTAAATTTATCCTCCATCTTTCATTAATCTTTAAGATTGTGTTTCAACTCCATATTATGGTATA CGTGTGCTTATTGAAAAAGAGAGATGATTCTTATTTTTGCCTCTCTTCACTTTGTTTCAAAACAGGATTATGTGCCAACA GTTTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTGTTAATCTGGGTTTATGGGACACTGCCGGTATTGT TATATGAAATATTTTTTATTTTTTAAATCAACAATTAAAGAGTCTCTTCTGGATTTTTATTGTTTTATTTTGTGGTACAG GACAAGAGGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGC AAGGCTAGTTATGAAAATGTTTCCAAAAAGGTACTTATGCCACTGTTTCAGAGTTTACTTTCCTTCTGTTCCTTGAGTTT AAAATGCACTTTTGCATATTCGCTTATGTACGAGGTTTCTATATAAAATGAATCAGTGTTGTCAAATCGCGATCGTGGTG AGCCAAAAATCCGCTATTTCGGCCGCAATTTAGTGGCGAATAGCGGGAATAGCGCGCTATAGTGGGCAATAGCGGCGTCG CAATTAGCCAAAAATCCGAGCTCCGCTATAGCCGCTATTTGATAACACTGAACTGAATGAACGATATGCTATTTATATTC ATTAAAAAATTGATGATAAGTTGAATGTATGTTTCATTTACAGTGGATTCCCGAGTTGAAGCATTATGCACCTGGTGTTC CCATTATTCTGGTTGGCACAAAGCTTGGTAAGCCCATTGCTTCCTAATGTGATATCAGATATTGTGATATTATGCATATA TTAGTTGATTCAATCTAGCATATTTATGTATAGTATTAAGTATTAACCATTGTTTGTTTCAAGAAAACATATAAACTTAA TAATATTGATTCCATGATCCATGAATGTTTTCTTTAGATACTTCTTCAGAACTTCACATTATCAAAATGTGTTGGTTCAA AGAAATTTTTTTTTATGTTCATATAATAAATGGTAAACTACTAAAAGGTAATTTATATTTTCCAGTAAGGGCTTAAGGAT TATTTTATAGGTGCTTTTTGTGACTTTATTTCGATATATAATTTCTATTTTATGTCACGCTTTTGATTGGATATTACTCT TCTATATTGTCTCTCTATTCCAGGATGTCTGCAGGGTAGGGATTTTATAATTACATTCTTATAGTTGCTGGGAAGGTTGA ATAATTAATACCGTCTAATACATGTTCATCGTTAGTATATTTCGGCATTGTTAAATAAATGTGTCTAGGATGAATTCTGC TTTCTTTTGTTTTCTCCTTTTACATGTCCTGTGAACTGTGAACAACTAGATCGAATGCACTATCTAGTGCAATGCTAGAG GTCTCAACTATTGAGCTTGACTTTGTGTGCCTTGGATTTAGAAAGTGATTCTGAAATGCAATTGTACTGTTTGAAAGTTG TTAATTGGAATTTTGGTTCAGGCTGCCATCTCTTTCTCACTATATATGTGTGAAATGTGAATATATGACATCAATTAAAA AGTCACTTTAATTCTTAATCACATAAAGTTTAAACAGTTTGTTGATGCAGTGTGTGTATGTGTGGACGGGTTGGTCCTAT CTTCAGATTTGTATCAGTACTTTCAGATCATCTTTGAACTACTTTCTTACAAGTTTTGTTCTATTATGGGGATAGTTAAT TGTGTTTATAGTGATGCTGACCTGTTCATATTCTATTTACTGTTTTGTCAACTAAACATTGGTCCTTTACCAATTTGTGT TTTGAAATGAGACAGATCTTCGGGATGATAAGCAGTTCTTCTTGGACCATCCTGGTGCTGTGCCCATTACCACTGCTCAG GTGAATACTGTTTCTGATACTCCTTTAATTGCTTTATACTTCTTAATCCATGTTTCAATTCTTTTTTTGCTGCATCGGAA AGGTACCCGTTTGAATTGTACTTTAGTTATTTAATTAAATTTTAATCCAAAACTTGTTTATCTACTTGAAGGGAGAGGAG CTTAGGAAGCTGATTAATGCGCCTGCTTATATTGAATGCAGTTCGAAAACACAGCAGGTACATAATCTGTTTTCTTTTTC TTCTTGTACACAATGTTTCAATTGAATTGGTGGTTTTAAAATTGTCTATGGCTTTTACCGCAGAATGTGAAGGCAGTCTT TGATGCGGCCATAAGAGTTGTGCTTCAACCACCAAAACAAAAGAAAAAGAAGAATAAAGCACAGAAGGCCTGTTCAATAT TGTGATTCGCTGCGTCTGAACATTTCACAATTGACAGCCATTGGTTCAACCTTTTTTTTCTCCTCTTCTTCCTTTTCTTC ATTCGTTCACATTGTTGAAGAAGTTGGAGTATATGTGGGTGTTCATTTAACATACTCTAGATCTCTTTAAACCATATAGG TGGTTGGTGTTTTGCTTTCTTGGAATTATTGTGATTTCTAATTATCAAATTTGCATTCATGGTTCCCACCTTTTTCTTTA ACTTACGTTTTATGTATTAATAGATTGCAATATCCCTGTTAGGATAAATGACCTTGTTTGCCTAAAGATATTTTAATATA TATCTAAATTATTTTGTATTTCTTTATAATGCTTGCTCTGTGCAATTATCTCTTGCTGTTTCTGAGGTGTTATTTGGTGG TTCTGTATTTAAAGCTGCTGTTATAACACATATAAGGCTAGGTTTGAAAACTAATGTGTTACGTTTATAGCTAGTTTTAT TGACTAGTGTTTATAGATACTACCCACCGAAAACTTTTTACAGGAAAGGCAAAATGGGGCCTCAAGCACTTCACTTTTTT TTTTTTCTGAAAGTGCTTACTTTATTTTC
CDS sequence (LotjaGi4g1v0130300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCTCCTATAC CAGCAACACCTTCCCCACCGATTATGTGCCAACAGTTTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTG TTAATCTGGGTTTATGGGACACTGCCGGACAAGAGGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTT TTCATACTGGCTTTCTCTCTCATAAGCAAGGCTAGTTATGAAAATGTTTCCAAAAAGTGGATTCCCGAGTTGAAGCATTA TGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCTTGGACCATCCTG GTGCTGTGCCCATTACCACTGCTCAGGGAGAGGAGCTTAGGAAGCTGATTAATGCGCCTGCTTATATTGAATGCAGTTCG AAAACACAGCAGAATGTGAAGGCAGTCTTTGATGCGGCCATAAGAGTTGTGCTTCAACCACCAAAACAAAAGAAAAAGAA GAATAAAGCACAGAAGGCCTGTTCAATATTGTGA
Protein sequence (LotjaGi4g1v0130300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPGAVPITTAQGEELRKLINAPAYIECSS KTQQNVKAVFDAAIRVVLQPPKQKKKKNKAQKACSIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 177 | 177 | 25.095 | ||
PANTHER | 1 | 197 | 197 | 1.1E-132 | – | |
PANTHER | 1 | 197 | 197 | 1.1E-132 | – | |
Gene3D | 3 | 183 | 181 | 4.8E-66 | – | |
SMART | 4 | 180 | 177 | 3.4E-22 | – | |
CDD | 6 | 178 | 173 | 3.53276E-136 | – | |
SUPERFAMILY | 6 | 178 | 173 | 5.89E-54 | ||
PRINTS | 7 | 28 | 22 | 1.2E-37 | – | |
SMART | 7 | 180 | 174 | 6.8E-28 | – | |
TIGRFAM | 7 | 171 | 165 | 2.9E-36 | ||
Pfam | 8 | 178 | 171 | 1.3E-51 | ||
SMART | 9 | 180 | 172 | 4.8E-115 | – | |
PRINTS | 30 | 46 | 17 | 1.2E-37 | – | |
PRINTS | 47 | 69 | 23 | 1.2E-37 | – | |
PRINTS | 109 | 122 | 14 | 1.2E-37 | – | |
PRINTS | 155 | 177 | 23 | 1.2E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi4g1v0130300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…