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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0130300 |
Transcript ID | LotjaGi4g1v0130300.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Rac-like GTP-binding protein; TAIR: AT2G17800.1 RAC-like 1; Swiss-Prot: sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1; TrEMBL-Plants: tr|F8TJT2|F8TJT2_LOTJA ROP6; Found in the gene: LotjaGi4g1v0130300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19071223..19075698) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCTCCTATAC CAGCAACACCTTCCCCACCGTGAGTTTTTTCTTCCTACCCTTGAACATTTCTGAAATTTGGGTGATTTGATGATTGTTGA ATTTTATGAATGTTAAATGTAGCCAATGAGAAGAATTTCTGCGAATGGTTAATTTTTTTAGGGGAATTTGAGTTTCCCAA TTTTGTTTTTGAATAGATGCTTAGATTTTGAGGGTGTGATAATTGTTTTGGGTGTTACAACATGATAAAATGAAAACTTT TCCTCTATTATTTGGGGTTTAAAATATGTAGTTTCCCTATAATTTTTCTATTTTAGATTGGAAGGAGGACTTCTTTTTGT ATCATTGGAGGGCTTTGTAATGCCGTATATGAGATTGCATATTAATGTTTGTTGGGGAAATCAATGAGTATAGTCATAGA TGAAGAAATCAATGTTTGAGGTGGCTTGTCTTATTTTTCTGCATGTGTAGTGTTGTGTCTTATTTTTCTGCATGCGTTGT GTCTTTGATATCACGAAACGGAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTTCTGCCAAATGCAGTTTGCATCT TTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAAATGCTCGATAGTCGATATCACGAAACGAAACCCACGAATCAA TTTCTAAGCATTCTCCGTGTTTCCCGCCAAATGCAGTTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAA AAATGCTTGATAGTCGATATCACGAAACGAAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTCCCGCCAAATGCAG TTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAATGCTTGATATCACACAACGAAACCCAAGAATCT ATTTCTAAGCATTCTCCCTGTTTTCCGCCAAATGCAGTTTGCATCTTTTATTTTTTAATTGTTGGTAGTATGTTTTGTGA AAAATGCTCGATATCACGAAACGAAACCGTAGAATCTATTTCTAAGCATTCTCCGTGTTTTCCGCCAAATGCAGTTTGAG GCTTTGAACCATTAACCATGTTGTTTTTTTGCCAAACACCAATACTGTTTTGCCTCGTTATCATTCTTAACTTTTGTTAG TTTTTATTTCCATACTGAATAGCTGTGTTGCACGGGTACGGGTACGGGTACGGTACCCGGTACGGGTACGGTATTGGGTA CGCGGTACGCGATTTTTGAAAAAACAGGGGTACGGGTACGTTAGATACATGTGTATCCTATCTTAATTATTTCTTCAGAT TTGAAGTCAATTTTGGCTGTTTGCTACCAAATTGAATACAGGGCAAGTGGGCAACCTCATCTTAATGCCACATATGCCAT ACCCACTTTTTCACTCACACACTCATCCTTCAGGGTTCTGTCTCTCTCACTTTTTCCTCTTTCAAGCCTTCACTCACTCA CTCACCTCACGCCCTCAAACTCACAGCCACACATCACACACTCAAATTCAGTCTTCACTCACCCACCGCCTCACCCACTC TTCACTCACTCACTCACTCACTCATGACTCACCCACCGGGCACCGCCTCACCCCCTCACCCACAGCGTCCCTCAACCCTC TTCACTCAGGTGATTACCCATTGCCCTCACAGTATTACACAACCCTCTTCACTCAAACACTCAGAGTCACAATTGATCAA CAGAGCCAGAGGACATAGTCAAAGAAAGTTTACCTCAGAGAGAAAGAGAAAGAGAAAGGGAGCAATTGATTCGAGTAGGA AGCCGTGAAGACTGAAGGGAGAAATCAAGCAACAAGCAATCCAGTTTAGGGTTTCTTTATTTACTAAAGTCATGGCTGCT TCTCTTTTCTTCCTTCTTTTCACGCGATTTAGGGTTCTGTTTCTCTTTTTTTTTTTTTTTAAAGGCCAAAACGACGTCGT TTTGGCCCGTAACCCCCCCCCTTTTTTTTTTTGTAACGGGTACGTACCGGGTACGTACCGTATGCGTACCCGACGCGTAT GCGTACCGGGTACGTGGCCAATTTGGCCGTACCCATGCATCAGAGCTGAATAGTAGCTCTGATGTTTGTTTTGTTTAAAA CCTTTAATTTGTATATCTTTTTGAAGAGTATGGCAATTTACTTGAAATTATGTATTGGGTTAGAGAAAGAAAATACTGAG ATTGTGGTGCTAAATTTATCCTCCATCTTTCATTAATCTTTAAGATTGTGTTTCAACTCCATATTATGGTATACGTGTGC TTATTGAAAAAGAGAGATGATTCTTATTTTTGCCTCTCTTCACTTTGTTTCAAAACAGGATTATGTGCCAACAGTTTTCG ACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTGTTAATCTGGGTTTATGGGACACTGCCGGTATTGTTATATGA AATATTTTTTATTTTTTAAATCAACAATTAAAGAGTCTCTTCTGGATTTTTATTGTTTTATTTTGTGGTACAGGACAAGA GGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCTA GTTATGAAAATGTTTCCAAAAAGGTACTTATGCCACTGTTTCAGAGTTTACTTTCCTTCTGTTCCTTGAGTTTAAAATGC ACTTTTGCATATTCGCTTATGTACGAGGTTTCTATATAAAATGAATCAGTGTTGTCAAATCGCGATCGTGGTGAGCCAAA AATCCGCTATTTCGGCCGCAATTTAGTGGCGAATAGCGGGAATAGCGCGCTATAGTGGGCAATAGCGGCGTCGCAATTAG CCAAAAATCCGAGCTCCGCTATAGCCGCTATTTGATAACACTGAACTGAATGAACGATATGCTATTTATATTCATTAAAA AATTGATGATAAGTTGAATGTATGTTTCATTTACAGTGGATTCCCGAGTTGAAGCATTATGCACCTGGTGTTCCCATTAT TCTGGTTGGCACAAAGCTTGGTAAGCCCATTGCTTCCTAATGTGATATCAGATATTGTGATATTATGCATATATTAGTTG ATTCAATCTAGCATATTTATGTATAGTATTAAGTATTAACCATTGTTTGTTTCAAGAAAACATATAAACTTAATAATATT GATTCCATGATCCATGAATGTTTTCTTTAGATACTTCTTCAGAACTTCACATTATCAAAATGTGTTGGTTCAAAGAAATT TTTTTTTATGTTCATATAATAAATGGTAAACTACTAAAAGGTAATTTATATTTTCCAGTAAGGGCTTAAGGATTATTTTA TAGGTGCTTTTTGTGACTTTATTTCGATATATAATTTCTATTTTATGTCACGCTTTTGATTGGATATTACTCTTCTATAT TGTCTCTCTATTCCAGGATGTCTGCAGGGTAGGGATTTTATAATTACATTCTTATAGTTGCTGGGAAGGTTGAATAATTA ATACCGTCTAATACATGTTCATCGTTAGTATATTTCGGCATTGTTAAATAAATGTGTCTAGGATGAATTCTGCTTTCTTT TGTTTTCTCCTTTTACATGTCCTGTGAACTGTGAACAACTAGATCGAATGCACTATCTAGTGCAATGCTAGAGGTCTCAA CTATTGAGCTTGACTTTGTGTGCCTTGGATTTAGAAAGTGATTCTGAAATGCAATTGTACTGTTTGAAAGTTGTTAATTG GAATTTTGGTTCAGGCTGCCATCTCTTTCTCACTATATATGTGTGAAATGTGAATATATGACATCAATTAAAAAGTCACT TTAATTCTTAATCACATAAAGTTTAAACAGTTTGTTGATGCAGTGTGTGTATGTGTGGACGGGTTGGTCCTATCTTCAGA TTTGTATCAGTACTTTCAGATCATCTTTGAACTACTTTCTTACAAGTTTTGTTCTATTATGGGGATAGTTAATTGTGTTT ATAGTGATGCTGACCTGTTCATATTCTATTTACTGTTTTGTCAACTAAACATTGGTCCTTTACCAATTTGTGTTTTGAAA TGAGACAGATCTTCGGGATGATAAGCAGTTCTTCTTGGACCATCCTGGTGCTGTGCCCATTACCACTGCTCAGGTGAATA CTGTTTCTGATACTCCTTTAATTGCTTTATACTTCTTAATCCATGTTTCAATTCTTTTTTTGCTGCATCGGAAAGGTACC CGTTTGAATTGTACTTTAGTTATTTAATTAAATTTTAATCCAAAACTTGTTTATCTACTTGAAGGGAGAGGAGCTTAGGA AGCTGATTAATGCGCCTGCTTATATTGAATGCAGTTCGAAAACACAGCAGGTACATAATCTGTTTTCTTTTTCTTCTTGT ACACAATGTTTCAATTGAATTGGTGGTTTTAAAATTGTCTATGGCTTTTACCGCAGAATGTGAAGGCAGTCTTTGA
CDS sequence (LotjaGi4g1v0130300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCTCCTATAC CAGCAACACCTTCCCCACCGATTATGTGCCAACAGTTTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTG TTAATCTGGGTTTATGGGACACTGCCGGACAAGAGGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTT TTCATACTGGCTTTCTCTCTCATAAGCAAGGCTAGTTATGAAAATGTTTCCAAAAAGTGGATTCCCGAGTTGAAGCATTA TGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCTTGGACCATCCTG GTGCTGTGCCCATTACCACTGCTCAGGGAGAGGAGCTTAGGAAGCTGATTAATGCGCCTGCTTATATTGAATGCAGTTCG AAAACACAGCAGGCTTTTACCGCAGAATGTGAAGGCAGTCTTTGA
Protein sequence (LotjaGi4g1v0130300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFLDHPGAVPITTAQGEELRKLINAPAYIECSS KTQQAFTAECEGSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 174 | 174 | 23.138 | ||
PANTHER | 1 | 166 | 166 | 1.7E-113 | – | |
PANTHER | 1 | 166 | 166 | 1.7E-113 | – | |
Gene3D | 3 | 171 | 169 | 3.0E-59 | – | |
SMART | 4 | 173 | 170 | 4.9E-13 | – | |
SUPERFAMILY | 6 | 164 | 159 | 8.61E-50 | ||
CDD | 6 | 164 | 159 | 3.8529E-128 | – | |
SMART | 7 | 173 | 167 | 6.4E-18 | – | |
TIGRFAM | 7 | 163 | 157 | 8.4E-35 | ||
PRINTS | 7 | 28 | 22 | 8.2E-31 | – | |
Pfam | 8 | 166 | 159 | 1.6E-47 | ||
SMART | 9 | 171 | 163 | 2.7E-97 | – | |
PRINTS | 30 | 46 | 17 | 8.2E-31 | – | |
PRINTS | 47 | 69 | 23 | 8.2E-31 | – | |
PRINTS | 109 | 122 | 14 | 8.2E-31 | – | |
PRINTS | 155 | 174 | 20 | 8.2E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi4g1v0130300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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