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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0130300 |
| Transcript ID | LotjaGi4g1v0130300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rac-like GTP-binding protein; TAIR: AT3G51300.1 RHO-related protein from plants 1; Swiss-Prot: sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1; TrEMBL-Plants: tr|W9QZH4|W9QZH4_9ROSA Vacuolar protein sorting-associated protein 35B; Found in the gene: LotjaGi4g1v0130300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19072390..19075698) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCTCCTATAC CAGCAACACCTTCCCCACCGTGAGTTTTTTCTTCCTACCCTTGAACATTTCTGAAATTTGGGTGATTTGATGATTGTTGA ATTTTATGAATGTTAAATGTAGCCAATGAGAAGAATTTCTGCGAATGGTTAATTTTTTTAGGGGAATTTGAGTTTCCCAA TTTTGTTTTTGAATAGATGCTTAGATTTTGAGGGTGTGATAATTGTTTTGGGTGTTACAACATGATAAAATGAAAACTTT TCCTCTATTATTTGGGGTTTAAAATATGTAGTTTCCCTATAATTTTTCTATTTTAGATTGGAAGGAGGACTTCTTTTTGT ATCATTGGAGGGCTTTGTAATGCCGTATATGAGATTGCATATTAATGTTTGTTGGGGAAATCAATGAGTATAGTCATAGA TGAAGAAATCAATGTTTGAGGTGGCTTGTCTTATTTTTCTGCATGTGTAGTGTTGTGTCTTATTTTTCTGCATGCGTTGT GTCTTTGATATCACGAAACGGAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTTCTGCCAAATGCAGTTTGCATCT TTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAAATGCTCGATAGTCGATATCACGAAACGAAACCCACGAATCAA TTTCTAAGCATTCTCCGTGTTTCCCGCCAAATGCAGTTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAA AAATGCTTGATAGTCGATATCACGAAACGAAACCCACGAATCAATTTCTAAGCATTCTCCGTGTTTCCCGCCAAATGCAG TTTGCATCTTTGATTTTTCAATTGTTGGTAGTATGTTTTGTGAAAAATGCTTGATATCACACAACGAAACCCAAGAATCT ATTTCTAAGCATTCTCCCTGTTTTCCGCCAAATGCAGTTTGCATCTTTTATTTTTTAATTGTTGGTAGTATGTTTTGTGA AAAATGCTCGATATCACGAAACGAAACCGTAGAATCTATTTCTAAGCATTCTCCGTGTTTTCCGCCAAATGCAGTTTGAG GCTTTGAACCATTAACCATGTTGTTTTTTTGCCAAACACCAATACTGTTTTGCCTCGTTATCATTCTTAACTTTTGTTAG TTTTTATTTCCATACTGAATAGCTGTGTTGCACGGGTACGGGTACGGGTACGGTACCCGGTACGGGTACGGTATTGGGTA CGCGGTACGCGATTTTTGAAAAAACAGGGGTACGGGTACGTTAGATACATGTGTATCCTATCTTAATTATTTCTTCAGAT TTGAAGTCAATTTTGGCTGTTTGCTACCAAATTGAATACAGGGCAAGTGGGCAACCTCATCTTAATGCCACATATGCCAT ACCCACTTTTTCACTCACACACTCATCCTTCAGGGTTCTGTCTCTCTCACTTTTTCCTCTTTCAAGCCTTCACTCACTCA CTCACCTCACGCCCTCAAACTCACAGCCACACATCACACACTCAAATTCAGTCTTCACTCACCCACCGCCTCACCCACTC TTCACTCACTCACTCACTCACTCATGACTCACCCACCGGGCACCGCCTCACCCCCTCACCCACAGCGTCCCTCAACCCTC TTCACTCAGGTGATTACCCATTGCCCTCACAGTATTACACAACCCTCTTCACTCAAACACTCAGAGTCACAATTGATCAA CAGAGCCAGAGGACATAGTCAAAGAAAGTTTACCTCAGAGAGAAAGAGAAAGAGAAAGGGAGCAATTGATTCGAGTAGGA AGCCGTGAAGACTGAAGGGAGAAATCAAGCAACAAGCAATCCAGTTTAGGGTTTCTTTATTTACTAAAGTCATGGCTGCT TCTCTTTTCTTCCTTCTTTTCACGCGATTTAGGGTTCTGTTTCTCTTTTTTTTTTTTTTTAAAGGCCAAAACGACGTCGT TTTGGCCCGTAACCCCCCCCCTTTTTTTTTTTGTAACGGGTACGTACCGGGTACGTACCGTATGCGTACCCGACGCGTAT GCGTACCGGGTACGTGGCCAATTTGGCCGTACCCATGCATCAGAGCTGAATAGTAGCTCTGATGTTTGTTTTGTTTAAAA CCTTTAATTTGTATATCTTTTTGAAGAGTATGGCAATTTACTTGAAATTATGTATTGGGTTAGAGAAAGAAAATACTGAG ATTGTGGTGCTAAATTTATCCTCCATCTTTCATTAATCTTTAAGATTGTGTTTCAACTCCATATTATGGTATACGTGTGC TTATTGAAAAAGAGAGATGATTCTTATTTTTGCCTCTCTTCACTTTGTTTCAAAACAGGATTATGTGCCAACAGTTTTCG ACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTGTTAATCTGGGTTTATGGGACACTGCCGGTATTGTTATATGA AATATTTTTTATTTTTTAAATCAACAATTAAAGAGTCTCTTCTGGATTTTTATTGTTTTATTTTGTGGTACAGGACAAGA GGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCTA GTTATGAAAATGTTTCCAAAAAGGTACTTATGCCACTGTTTCAGAGTTTACTTTCCTTCTGTTCCTTGAGTTTAAAATGC ACTTTTGCATATTCGCTTATGTACGAGGTTTCTATATAAAATGAATCAGTGTTGTCAAATCGCGATCGTGGTGAGCCAAA AATCCGCTATTTCGGCCGCAATTTAGTGGCGAATAGCGGGAATAGCGCGCTATAGTGGGCAATAGCGGCGTCGCAATTAG CCAAAAATCCGAGCTCCGCTATAGCCGCTATTTGATAACACTGAACTGAATGAACGATATGCTATTTATATTCATTAAAA AATTGATGATAAGTTGAATGTATGTTTCATTTACAGTGGATTCCCGAGTTGAAGCATTATGCACCTGGTGTTCCCATTAT TCTGGTTGGCACAAAGCTTGGTAAGCCCATTGCTTCCTAATGTGATATCAGATATTGTGATATTATGCATATATTAGTTG ATTCAATCTAGCATATTTATGTATAGTATTAAGTATTAACCATTGTTTGTTTCAAGAAAACATATAAACTTAATAATATT GATTCCATGATCCATGAATGTTTTCTTTAGATACTTCTTCAGAACTTCACATTATCAAAATGTGTTGGTTCAAAGAAATT TTTTTTTATGTTCATATAATAAATGGTAA
CDS sequence (LotjaGi4g1v0130300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGCGATGGAGCTGTGGGAAAAACTTGTTTGCTTATCTCCTATAC CAGCAACACCTTCCCCACCGATTATGTGCCAACAGTTTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTG TTAATCTGGGTTTATGGGACACTGCCGGACAAGAGGACTATAATAGATTGCGACCTTTGAGTTATCGTGGTGCCGATGTT TTCATACTGGCTTTCTCTCTCATAAGCAAGGCTAGTTATGAAAATGTTTCCAAAAAGTGGATTCCCGAGTTGAAGCATTA TGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGGATACTTCTTCAGAACTTCACATTATCAAAATGTGTTGG TTCAAAGAAATTTTTTTTTATGTTCATATAATAAATGGTAA
Protein sequence (LotjaGi4g1v0130300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLGYFFRTSHYQNVLVQRNFFLCSYNKW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 146 | 146 | 19.346 | ||
| PANTHER | 1 | 121 | 121 | 5.4E-83 | – | |
| PANTHER | 1 | 121 | 121 | 5.4E-83 | – | |
| Gene3D | 3 | 136 | 134 | 2.9E-45 | – | |
| SMART | 4 | 146 | 143 | 7.5E-10 | – | |
| SUPERFAMILY | 6 | 121 | 116 | 4.14E-41 | ||
| PRINTS | 7 | 28 | 22 | 1.4E-26 | – | |
| SMART | 7 | 145 | 139 | 1.7E-11 | – | |
| TIGRFAM | 7 | 120 | 114 | 1.9E-31 | ||
| Pfam | 8 | 120 | 113 | 3.2E-40 | ||
| SMART | 9 | 145 | 137 | 4.9E-65 | – | |
| PRINTS | 30 | 46 | 17 | 1.4E-26 | – | |
| PRINTS | 47 | 69 | 23 | 1.4E-26 | – | |
| PRINTS | 109 | 122 | 14 | 1.4E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi4g1v0130300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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