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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0131600 |
| Transcript ID | LotjaGi4g1v0131600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q3UPR7|TM102_MOUSE Transmembrane protein 102; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19250991..19259574) extracted from Lotus japonicus Gifu genome v1.2.
TAATAAGAGTCTATTTTTCTTGGAATTCAAACCAGGACTAAAATATGCAAATCCAACCCCAAAGTTTCAAAAGAGACAGA GAGAACTGTGGTAACCAGCATAAGAAAACACTATGCAATGGGGATCATTACAAAACACAATTAAGTTTAGGCATTTATGT CAGATATTGCAACATTTTTTGGACATATCTTCATTCAAATTTCTGGTGGAGGATATGATACCTAATTTACCCATAATGGT GGGCATGTATAGTTGTATACAAATCCTGCACAAGACGAGACAATATTGCTCGAAACATGAGGTCAATATAAAGAAAGTTG TGGAGAGGAAAGACTTGAGTACAAAAAGCGTAACACTCAAAGCCACAATAGTTACTGAAATCCTTGCTATTGGTCGTGGT ACAGAATTAGGAACGAGATTTGTGCCAGCCTCAACTCCATCTCAACCAACTCTCCATGCATTCTGCAGAACTTTAAGAAT ATTCGATTGTGCTGCAAAAACTACAAAACTGGAACGAGGTTTCTGGCTGGAAAACATTTTGAAGTGAGTGTTTGGGAGGA AAGCTTGTTTATTTAACTTCAAGAGGGAATTGGATTAAGAAAACTGATGATGAATGAGAGACATGGTTTGATTTTCGCTG CAATTTGGAAAGCAAGAGGGAAGGGAGCAAAAGCTATGAACAGAAACAGAAGCAAACATTTTTCTCTCTCTCTCTCTCAA ATATCGAAACGGTGCATAAACTGAGATTACTTTGAATCAAAGGGGTGAACAATAGTTTGGGTTGGTTTTCAACAACCATA CATTCATTAGCATGAAATAAAATCTTATCACAAGCACAAACAGAAAGGTAAATCTAAGAGGCGCATAATGAGGAAATAAA AACCACTAAAAACAAACTCAACACCTCAGACCAGCTAATAGTTCACTTACGAGTCGACTAGCCTCTTTGACAAAATCTGA TATTAAAGAAAATTGCAGGATGTGTTTCCAAATTCCAACCAATGCAAAGCCAAATTCATCAGGTTTTAAAGCATATTTCG TGACGCTATCTCTCTAAGACACATGATTTATGAACATATGAAGGCTTCACAGAGAAGCTGTGAGCAAACATATTCATGAT ATTCGGACTAAACTAAACTATGAAAGAATTTTAAAGTTAAAATGACCTAAGCAAAAGGGCCAGAAGTTTGGGATCTATGT TACCATAAAGCTTAAAGAATCCATTATTGTATATGTCAAAAATAGAAGACTTAACCATAAGAAACAAGGATTCCCAAATT GGTTTTTCAGTAACAAATTTCACTGCTCAAAATAAGATGAAAAATTCAAAAAGAGAACTTAGAGTTATAAACTCTCCAAA AGTTAATAATCCAACTTTCCAATGTAAATCAGAACTCACATGAAAGTTTCAAACCAAACAGGTAATGCATGTTGACATTA ATGCTTTCTTTCATAGGTATTGTAACAATTTGGCATGAACCTTCCTAAATGCAATATGAAAATAATGCTAAATTAATTTC CAGTGGAAATACATAGGTGAGTCACAAAGTTAGGAGACACTAAATGTAATAGATCATATGCTTATTTCCAATCTTTTTAA CTATCTATAATACAAACAGTAAAATGCATTTCAAATGCACTTCAGAACAATGTGGGCTCCCCCAACATATGATATATGTA GTGGACACACTGGGCAGTAAATATCAATGTATAAGCCAAGACAACATGATAAATTCCAGTTGATACCTAACCTGATAGAT ATTGAAATTCTACTCAGCATTGTTAGAGCACAGTTGGGTAGCTAAACTGATAGAGAAGCCACTAAAAGACTTGATCTATC TTTATCTATCTCACAACAAAAGACATGCACAAAAACAAGGAGGGAAACCAAAGTGTGTAATTCAAGAGGCAAACCAATGA AACATAGACAGCCAACTTATGCAATTGATGATATAATGCTCAAAATCAGCCAATTGTGCACAGAACCTCTGTTATACTAC CATGTACATCAAATCCTCATAGATAACCAAGAACCAAGTTCATCAAGTTAATATGGACACATTAGGAGTTATAGACAAAA TACTGTGTTGACCATTCCTTCCAAAATACAGCAGCAGTTTGAATAGTTAATTTTGTTTCCGCTTTCACTAATCACAAATT TGAATCCATCAGCCATCCATCTAACTGATTCACCACCCCTAGATACATGAAAAAGAAAACTTGAGTAAGAGACTAACATA TTGGAATAATGTATTTAATTAGTGGGTTAGTAGTTAATTATGATTAACATAGTTGGATTAGTTAGAGTCGGTTAGAGTTT GTTAGGGAGTTTGTTATTTCTTTCTTTCCTTTATAGCTTTGTACATATAGGACTAATACTTCACAATTTAATACAATGAG AAAATTCAATCAATCTCATTTCTCTCAACATGGTATCTAGAGCAAACAAAGCTTCCGCATTCTCTCTTGAGATTTTCTCA TCCTTTCCTTCTGTTTTCTTGGGAAAAACCTGATTTTCCCAGTGACAGTTATATTTTCCCTCTTTTTCTCAGCGATTTTC TCTTCCTTTCTCAGCGATTTTCTCAGCTGATTCTTCGATTCTTCTCTTCTTTTTCCTGGTTCTTCTCTCTGTTCTCCTTA CAGCTTCACTGATTCTCTGTTTCTCGAAGTTCCTTTTCCTCTCCAACAATGGCGACACAGTCACCGATTACTCGTGAGAA TCTTCAGGATTCAACTCATGATTACTACATTCATCCGAATGAGAATCTGTCCCTGGTGCTTGTGACTCCGATTCTGGATG GAAGCAATTATCACAGTTGGACTCGTGCGATGGAAATGTCTTTACAGATGAAGAACAAATTCGGTTTTGTTGATGGATCT ATTGCAAAGCTTCCTGATACAGATCCTATGCTCTCTGCCTGGAAGCGATGTAACAATCTTGTGGCTATCTCATGCGACTC ATGGATCAATCACTCTGTTTCGCATGAGATAGCCACAAGTATCATCTGGATTGATACTGCTTCATTTGCTTGGAAGGATC TGAAAGATCGGTTTTCACAAGGTGATTTTGTAAGAATTTCTCACCTTCATCATGAATTGTATTCTCTTAAGCAAGCAGAT TTGTCGATTACTGCATATTACACAAAGATGAAGATTCTCTGAGATGAAATGTGCAATTATAGGCCAATTCCAATTTGTAC TACTCCTAATGCTTGTTGTTGTGAAGCTGTGAAAACATTCAAGAAGTATCAAGACAATGATTGTGTACTTTGTTTCCTGC GAGGCTTGAATGATAACTATGCTGCAGCTCGCTCACAGATATTACTCATGGATCCTTTGCCTGTTTGGCCAAAGATATTC TCTATGATCATACAGCAGGAGACATCTTGACATAGGAGTGTTACCAGAACCTGCAGCAATGGCAGTTCAAGTTCCTCAAT CACAGAATGCACAATCTCAGTCATCTTACTCTAACAAAGGGAAATCAAGTTATCAGAAGTCTTTCAACAAGAACAACAGG CAGTGTACACATTGTGGAAGACTCAATCACACAGTGGAAACTTGCTTTCAAAAGCATGGATATCCTCCTGGATTTCCAAA TGGATATAAGCCAAAGAAGGCTTATCTTGCTGCTTCAGGTGATGATGCTCCTGTTGATGAGGAGCAGTTACATTCTTCAA GTTTGGAGCTCACAAGGGAACAACTTCAAGGGCTATTAGCTTTGCTTCCTTTCTCTAAGCCTACAGCCACCACACATTCT TCCAATCTTGTGAGCAGTCACAATGTCATTTCAAATGCCATAGGTAAACCTACTAAGCAATGGATCATGGACTCTGGTGT CACGGATCACATTGCTTCTTCTCTCACGTTTTTGCTTCCTATTATGCAATAAAGCCAGTGCCTGTCTCACTACCAAATGG AGCAAGTGCAATAGCACAACACATAGGAACAGTATATATTTCTCCCACTTTGACTTTGCATAATGTCCTTTATGTGCCTA GGTTTTCTGTTAATCTTGTGTCTATACACAAACTTACCAAAACATTGCCAAATAGACTGATTTTCAGTGATAATTATTGT TACATACAGGACAAGATCACCTTGAAGATGATTGGGAGAGCTGAGATCAGGCATGGACTTTATATCATGGTACTACCAGC CCTACATCAAGTTCAACCCTTAGCTTCTTTCCATTCAGTCAATATGACTAGTTCATTACCAATAAGTATGCCTCATATTT GGCATCATAGGCAAGGTCACCTTTCCTATTCTTGTTTAGAAAACTTACATAAGTTGTACCCTACTATTCCTTTGTCTCAT TGTACACCTTGTGATTCATGTCATTATGCTAAACAAAAGAGATAGTCTTTTCCTTTAAGCAAAACTGTTTCTGGCAATGT ATTAGCATTATTGCATGTGGACATTTGGGGTCCTTATAGTCATGCTTCTGTAACTGGTGCCAAGTATTTTCTTACTATAG TTGATGACAATTCTCGTTTTATATGGATAAAATTGCTGAAATCAAAATCTGAGGCTCGAATCACTCTTCAAAACTTCATT GTTTTTGCACAAAAGCGGTTTACTAAACAAGTTAAAACAGTTAGGACTGATAATGGTGTTGAATTTAGCATGCAAGATTT TTATACTAATCATGGCATTCAACATCAGTTAACATGTGTCGAAACTCCACAACAGAATGGAGTAGTGGAAAGGAAACATC AGCACATCTTAAATATAGCCAGAGCTTTGATGTTCCAATCTAAATTGTCAATTCAGTTCTGGTCCTTTGCTGTTTTACAT GCTGTTTACTTGATCAATATTTTACCTTCAAGGGTTCTGTCTTTCAGAACACCATTTATGGTTTTGCATAGCACTAAACC TGACGTGGATCAATTGAGAGTCTTTGGCTCACTTTGTTATGAAACCACTATTAAGGCACACAGAACTAAATTTGAAACAA GGGCTAGAAAGTGTGTCTAGAAATGTTATTTTCTATGAAAATATTTTTCCATTTAAAGGCAGTGGCAGTGAATCACAAAC TTCTTTGCTTCATACACTATTCTTACCAACTGACATTAATAATTCTTCTCATGATTCATTACTGTTAGAATATAATATAA AACCATTGATGTGGTCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTACTTGACATGGTATCAGAGCCTCTATG ACCGAGAGGTCTAGAGTTCGATCCTTGCTTCCCTCACTTTCTAATTAAAAAGTGGAATTTAATTAAGCACATGGTAGGTG GGCCTGTGCATTTATCCACGCTTCAAACCCAAAGGGCTCTTGCGTGAGGGGGCGTGTTAGAATATAATATAAAACCATTG ATGTGGTCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTACTTGACAATTACCACCACTTGCCCAAGACACACA ACCTCCACCCACTATTCCTGATTCTCTTCCCACCATTCCTCCCCCTTTACCCCCAGTTAGACAATCAGCCTGAACCAAGA CCAAACCTTCTTATTTGCAGGATTACCATTGCAATTTGGTTCATACTTCATCTCAGATCTCTCCTCCATCTGGTACACTC TATCCACTTTCTGATTTTCTTTCTTACTCTTCTCTTTCTCCTTCATATCAGTCTTTTGTTTTGTCTTGTTCTACACTGGT TGAACCTAAGATCTATAACCAAGCTGTCAAAGAGGAATGTTGGAGAAAGGCTATGGACCTTGAAATTGCAGCTCTTGAAG GTACACAAACTTGGGAATTGACTGACTTACCTCCTGGTAAACATCCTATTGGATGTAAATGGGTGTACAAGATCAAGAGA CATGCAGATGGTAGTATTGAAAGATTCAAGGCTAGATTGGTAGCCAAAGGATATACACAACAACAAGGTCTGGATTATTT TGAAACTTTTTCTCCAGTTGTTAAGATGACAACTGTGAGGTTAGTACTTGCTTTGACAGCTTCTAAGAATTGGTACTTGA AGCAATTGGATGTGAACAATGCCTTCTTACATGGTCATTTGGATGAAGAAGTGTATATGTTACCTCCTCCTGGCTACAAT ACTACTCATCCAAGTCAAGTATGTAGGCTCATCAAGTCTCTATATGGCTTGAAACAGGCCAGTAGACAGTGGAACTACAA GTTGACTACTTCCCTGCTTTCCTTGGGTTACAAGCAATCAAAGAGTGATTATTCTTTATTTGTCAAACACACTGATGGTC ATCTTACGATCCTTCTTGTCTATGTTGATGATATTGTTTTGACAGGAGATGACTTGCAGGAAATCACTAAGGTCAAGCAA TTTCTAGACAACACGTTCCGAATCAAGGATTTGGGAGATCTCAGATATTTCCTTGGTTTTGAGGAGGCCAGATCCAAGCA GGGGTTAGTGCTTTCTCCGAGAAAGTATGCCTTGGAATTGATATAAGAAGCAGGATTATTGGCTTGCCAACCAGTTACCA CACCAATGATTCCAGGCACCAAGTTTACAGCACAAACAGATCAGCCATTTCAGGATATTTCTGCATACCGAAGGTTGATT GGCAGGCTTCTATATCTCACCAACACAAGACCTGACTTGTGCTTTGCTGTGAGTACATTAAGTCAGTTCCTCTCCAAACC AATGAAGGAACATCATGATGCTGCACTTAGAGTGATCAGATACATCAAACAGAAACCTGGTCAGGGGTTATTCTTTTCAG CTAGCTCCTCACATAAAATCACAGGTTTTGTGATTCGGATTGGGCTTCCTGTGTTGACACCAGAAGATCAGTCACAGGGT ATAATCTCTTCTATGATTCTTCATTAATCAGTTGGAAGTCTAAGAAGCAAAGCAAAATCTCCAGATCATCGTCAGAAGCT GAGTATCGGGCTCTTGCAACTACAGCTTGTGAAATCCAGTGGTTGTTATATTTACTGGCAGATCTTCATCAACCAATGGT GACACCAGTAGCTGTGTTCTGTGACAATCTCTGTGCGATCCAAATAGCACAAAATCCAACTTTCCATGAGAGAACAAAAC ACACTGAGATAGATTGTCACTTGGTGAGAGACAAGGTTCAACAAGGCATCCAAACTCATGCCTATACCGACAAGTGCACA ACTAGCTGATCTACACACTAAAGCTCTCCCTGCTCCTCAATTTCAGATGTTATTGTCCAAGCTTAGCCTCAAAAATTTAT ATGCCTAAGCTTGAGGGAGGGTATTGGAATAATGTATTTAATTAGTGGGTTAGTAGTTAATTATGATTAACATAGTTGGA TTAGTTAGAGTCGGTTAGAGTTTGTTAGTTTGTTAGGGAGTTTGTTATTTCTTTCTTTCCTTTATAGCTTTGTATATATA GGACTAATACTGCAGAAGTGAATACAATGAGAAAATTCAATCAATCTCATTTCTCTCAACATAACACATTAATTAATTTT AACATGTGAAAACTAGTTGTTAATAAAAACCATGCCTGGAAAACGGTGACGACGAGTACTCAGGCACCCTCTTCACCCTT CTTTGTTGTTGTCGCGTAGCTCAAACAGGTAGTTAATGCGGTGTTGGAGGATACCTAGTTGCAATTTGGTATCCACGGCC AGCAACTTAAAACCTTTGGACTCCTTCTCCTGAAATGTCCACAGACTGTTCTTCAATTCAATCCATAGCTCCTTGTGCTG CGGCCAATCTTCCATTAGCTGGTACAAGTTTTTGACAATCTCACAGTTGGAAGATAGTCTTGAGTTTGACAACTCCAGTG CCAAATCACAAATCTTCTTAGTCATCTCATTATGCCTTGTCATGTTTGTAATTGCCATATCAATCTGCAGCAGCCCCATG CGGCTCTCGCGAATCTCGCGAAACTCCATCTTCGTCATCTCATTGATCTCTTCGTTGAGAGCCATTTTGGGCTCGAATAA CTCCGACAACCGTTGCCGATCACTACCCAGCCTCTGATTCAAGCTCAATGCACTGGCCTTAAGGTGCTCAAGCTTGTGAA CCAAGGAGTAGGTTGGGTTGGAGTTGGAGCTCGAAGGGTAAGGTCGAGATGAATGGTTCGAGAAGGACCTCACTCTCCGC GAGTTGTTTGAAAGCCTCCCTGACTTCTTTGACAAGGGAAGGGGAGGGTTGGTCGGAGTTGGGGTGGTCGCCGGCGCCGG AGTCGGAGATGGGTATGAGGCGGCGGAGGTGGTGGAGCATAAATGTTTGGATTTTTGTCAGACTGGAGAGGAAGGGGTGG TTGGTGTTGGAGGTGGAGGTGGAAAAGAGGTGGTGTTGGTGGTGGAGCAGAGAAGGGGTTGTGAAAGAGTGGAATGTTCT GAGACGGAGGAGGTCGTCGGCGCCGGAGTTGGAGGTGGCGGTGGTGGTGGAGCAGAGAAAGAGAACGAGAAGGGTTAGTG ACAGTGTGGATTGTTCTGAGACGGAGGAGGAATGCCATAGCTGATGAAGAAGAAAAGACAGAGCAGAGAGAGAAGTGTTT GTTGTACTATTTTTGTTTCTGCTGTGAGTGTGACTGTGTGACTATGAGAGAATGGTGAAGAAGAAAAGATGACAGAAATT GAAAATTTTAAATATGAGAAGGAG
CDS sequence (LotjaGi4g1v0131600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACACAGTCACCGATTACTCGTGAGAATCTTCAGGATTCAACTCATGATTACTACATTCATCCGAATGAGAATCT GTCCCTGGTGCTTGTGACTCCGATTCTGGATGGAAGCAATTATCACAGTTGGACTCGTGCGATGGAAATGTCTTTACAGA TGAAGAACAAATTCGGTTTTGTTGATGGATCTATTGCAAAGCTTCCTGATACAGATCCTATGCTCTCTGCCTGGAAGCGA TGTAACAATCTTGTGGCTATCTCATGCGACTCATGGATCAATCACTCTGTTTCGCATGAGATAGCCACAAGTATCATCTG GATTGATACTGCTTCATTTGCTTGGAAGGATCTGAAAGATCGGTTTTCACAAGGTGATTTTGTAAGAATTTCTCACCTTC ATCATGAATTGTATTCTCTTAAGCAAGCAGATTTGTCGATTACTGCATATTACACAAAGATGAAGATTCTCTGA
Protein sequence (LotjaGi4g1v0131600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQSPITRENLQDSTHDYYIHPNENLSLVLVTPILDGSNYHSWTRAMEMSLQMKNKFGFVDGSIAKLPDTDPMLSAWKR CNNLVAISCDSWINHSVSHEIATSIIWIDTASFAWKDLKDRFSQGDFVRISHLHHELYSLKQADLSITAYYTKMKIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 157 | 148 | 6.2E-48 | – | |
| PANTHER | 10 | 157 | 148 | 6.2E-48 | – | |
| Pfam | 22 | 67 | 46 | 4.8E-17 | ||
| Pfam | 91 | 157 | 67 | 7.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0131600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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