Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0132900 |
| Transcript ID | LotjaGi4g1v0132900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G17730.1 NEP-interacting protein 2; Swiss-Prot: sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1; TrEMBL-Plants: tr|I3S7G7|I3S7G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0132900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19383631..19386963) extracted from Lotus japonicus Gifu genome v1.2.
TGTGGCATTAAGACGAAGGGACAAGAGCTTTAAATATGGGTTGGTTGATGGTTGTTTCATTCTTTCCATCTCCTTTCATT TCTTTTGTTTTCTTTGGAATCACTGCCACATCTCTCTTGTCTTACACACTAAGCATTCGTCAGAGGAGTTAGATATTTCT CATACAACACAAATTATTATTATTATTATTAAAATTCTCCTTTTGCTTAAACCCAAATCTCACAGATAGAACTGTACTAA AATCACCTCAATTTCTGAGATACCCACATGGAGTTTGAGGCAAATCAACGCCCTTTCTTGTGTTCTTTCGGGAATTTCGT TGAAACTCTCAAACGTGGTTGCAGCCTCGCCTTCTCTGCCATAATAGGGAACATCTTGTCGGCGATCTTGACCTTCTGCT TCGCATTCGGTATAATCCCATTCTCGATCTGATCTATTGTTTCGTTTTGTGAATTTGTGTTTGCTATTGTTGTTGTCTTA TGTCATGTACGAGGTTGTCTTTCAATTTGTTTGTACTTAGAATTAATTCAATTCATGATTGTTTAGTTTGAGTTACAAAT GCAGATTTTTTTGTTTGATTTGAGAAAAATGATGAATTGGGTGTGGCACTTTGCAAAGAAAATAATCTATTCACACCTTA ATTTGATCTTGAGCTTGAGATATATCAATAGAATAGTAGAGAGAAATCATAGGTATGAATGATGGATGGATGGATGATGT GATTTAGAAAGAAGACATAAGAATAGAAAATGAGTGAAGATGTGATGTTAAATGAATCAAATTGTTTTGGAAAGTCCATT TTGATTTCCAAATTCATCCAAAGTTGTGATTTTTTTTCATGGGTTTTTTGTTGTTGGCAGTGGGCACTTTGTTAGGGGCT ATGACTGGGGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTTGTAAGAGGGGCTGCTGTTGGTGCTATATCAGGAGCTGT TTTCTCCATTGAAGTGTTTGAATCCTCGCGTGTTCTTTGGCAATCTGACGAATCTGGATTTAGGTGTCTCTTATACTTGG TGAGTGACTTGGTTTCAAAGCTTGTAACTAAATACATGTTTGGAAATCATTGTACTGTTGATTCTAAAGCCGAATTAATT ATAGGAAGAAGCTTCTGTGAGGATCTACTGATGACATGATTGATTTAGAGAAAAGTGAAGATCCAAACATGCTATAAACA ATTGTTGAGTTCTTTGCGGCGCCTTGCTATTGAACTGTTATTTTCACTGGCAAGTTCTGTATTTTGATCTATGAGTTCTA CTTTGCAGATTGATGTTATTGCTAGCCTTCTGAGTGGGAGACTCGTGCGTGAAAGGATAGGTCCAGCCATGTTTAGTGCT GTCCAAAGCCAAGTAATTTTTCTTTGTCCCAAAGTAACCTATGAGACAGGAATTTGGTTATGCACTCATTATCTTGCTTA TGCTTTTGTTTTTCTTCCTTTTCAGATGGGTGCTGTCGAATCGGGCTTTGATGAGGTTCAAAACCTCTTTGACATTGGTG ATGCCAAAGGTTTATCAGGAGCTTCAGTTGCAAAGATCCCACAGGTAACAATTACCGGAAACAACGGTGATGCTTCTGGT CAAAGAGATTCATGTTCAGTTTGCCTCCAGGTTTGTTTATTATGCAGTTTTTGTAATACATGTGATATTTGTATACCTTG AAGTTTTGTTAAGCTTATGTATATTGAAATTTGACATTTCCGAATTTGTTCATTTTCAGGACTTTCAACTCGGAGAGACA GTTAGGAGCTTACCCTACTGTCATCACATGTTTCACCTACCTTGCATCGACGAGTGGCTCAGCAAGCATGTTTCTTGCCC ATTATGCAGAAGGGATATGTAATTTTGTATATGTACAAGCCTCAAAATAGGTTCTACCATTGTTTATAAGCGCATAAGCT GTTAGGAACATGCACTTGGTGACATGTAGTGGGAAACATCCCCTGCCATTTGAGTGGCTACATTTTAATAAATTAGTTTA AAGAAAATTTTTACATGAATCTCGTTGACATGAAGCAAACCTGGAGGCAAACTGAACATGAATCTAAGAGGACATTTCTA AGAAGGAGAAGCTATGGAAATAAGAGGACATTTTTTTATTTTTTATAGTTTATTTAGTCTTATCACATGAAATAAGTACT TCAATTAATAAGGGAGGGCAACGGGTGCTATTTGAGTAGGTTATTGTAAATCTTGTTCCCATACTCTCATTTTTTTTATT AAAAATATGTATAAGGAATCATGCTATACTATGGGTTAATTTAGAAAGGTTACCATTTTTCATTGCCAATAAGGATTAAG GAATAAGACACAAAGATTCGTCCCCAATATCCTATTGTAGATATAAAGATGAGAGGTCGGTATGAGCACTATGACACATT CATCCTTGCCCATATAGCATTGTAAGTATATTTTGCCTCATATAATGCACAACATGTTCTAAAGACATGGGTGGTTAATG TGTGCCAATCACAACAAAGTAAATAGGTCATATCAAAGTCAATGACACATGTGGAGAAGTGTCATCAAGTTGATGAGATA TCAACAAATATATATCCCAATTACACAACTTGAAAAGGTTTGTTGGTCAACCAATTTGTGCCCATCACCATGAGATTGTT GATCCAGTTGATGAGCCAAATCAACCAATAACCAAGACAGAGTGAAAGGAGGAGGAGCTCAGAATGGGAACCAAGAGAAG TTAGAGGACGAGGAGAAGGAATCATGTGATGGGGAAAGAGATAACAAAGAGCTTATGAGAATGGGAACCACTCCAAGAGA AGTTGTTCATGAAACGAAGTGTCTTAAAAAGTTAATTGTATTTTAAGGCGGACTATGAGAAGGAATATGAGTCAGTTCAG TGGGATTTTCTATTCTACATGATGAGAAGAATGAAGCTTGATGTGACTGTTTAAAAAATAAAGTTTGGCACGAGGTGGAT TCGTTGGATTAAAGATTGTCTTGACTCTACGTCAGACTCGATGTTGGTAAATGGTAGCCCTTGCAGCGAGTTCAGAATGG AAATGGGCCTTAGACAAGGTGACTCCCTCACTCCTTTTCTTTTTCTGATAGTGGCCGAAGGTTTAAACGATTTGTTCATG AATGCGGTAAAATTAAGGCAATTTAGTGGTTTCAAAGTCAGAAGGGATAATGTAGAGGAAGTGTCTTTGGCCCAATTTGC CAACGACACAATCTTTTTGGGGAGGCTAATTTGCAGAATATGATTGTCATTAAATGTGTGCTGAGATGTTTTGAGCTAAT TTGAGGGCTTAAAGTGAATTTCAATAAAAGAAAGTTGACATTTATTGCTTTGG
CDS sequence (LotjaGi4g1v0132900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTGAGGCAAATCAACGCCCTTTCTTGTGTTCTTTCGGGAATTTCGTTGAAACTCTCAAACGTGGTTGCAGCCT CGCCTTCTCTGCCATAATAGGGAACATCTTGTCGGCGATCTTGACCTTCTGCTTCGCATTCGTGGGCACTTTGTTAGGGG CTATGACTGGGGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTTGTAAGAGGGGCTGCTGTTGGTGCTATATCAGGAGCT GTTTTCTCCATTGAAGTGTTTGAATCCTCGCGTGTTCTTTGGCAATCTGACGAATCTGGATTTAGGTGTCTCTTATACTT GATTGATGTTATTGCTAGCCTTCTGAGTGGGAGACTCGTGCGTGAAAGGATAGGTCCAGCCATGTTTAGTGCTGTCCAAA GCCAAATGGGTGCTGTCGAATCGGGCTTTGATGAGGTTCAAAACCTCTTTGACATTGGTGATGCCAAAGGTTTATCAGGA GCTTCAGTTGCAAAGATCCCACAGGTAACAATTACCGGAAACAACGGTGATGCTTCTGGTCAAAGAGATTCATGTTCAGT TTGCCTCCAGGACTTTCAACTCGGAGAGACAGTTAGGAGCTTACCCTACTGTCATCACATGTTTCACCTACCTTGCATCG ACGAGTGGCTCAGCAAGCATGTTTCTTGCCCATTATGCAGAAGGGATATGTAA
Protein sequence (LotjaGi4g1v0132900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFEANQRPFLCSFGNFVETLKRGCSLAFSAIIGNILSAILTFCFAFVGTLLGAMTGALIGQETESGFVRGAAVGAISGA VFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAVESGFDEVQNLFDIGDAKGLSG ASVAKIPQVTITGNNGDASGQRDSCSVCLQDFQLGETVRSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 12 | 230 | 219 | 2.6E-113 | – | |
| PANTHER | 12 | 230 | 219 | 2.6E-113 | – | |
| Phobius | 27 | 55 | 29 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| Phobius | 67 | 87 | 21 | - | – | |
| Phobius | 88 | 98 | 11 | - | – | |
| Phobius | 99 | 120 | 22 | - | – | |
| Phobius | 121 | 230 | 110 | - | – | |
| Gene3D | 148 | 230 | 83 | 7.0E-22 | ||
| SUPERFAMILY | 178 | 229 | 52 | 6.8E-20 | – | |
| Pfam | 183 | 227 | 45 | 5.0E-12 | ||
| ProSiteProfiles | 185 | 227 | 43 | 12.179 | ||
| SMART | 185 | 226 | 42 | 1.1E-6 | ||
| CDD | 185 | 227 | 43 | 1.58457E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0132900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…