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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0150800 |
| Transcript ID | LotjaGi4g1v0150800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A1J7GN86|A0A1J7GN86_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0150800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:24836939..24838542) extracted from Lotus japonicus Gifu genome v1.2.
CACCCACTTAACATGTATCCCAACTCAATGAAGCTCCTCCGTCTTTCATTCACTGCCACCCTAAAAACCTTTCGCCGCCA CATGCTCCGTAACGTCGTGTCGCCGCCGAACGTTAACTCTTACAACGTCGTGATCCGAGGCTTCGCCGCCGCTGGGAGCT TAGAACCAGAATCGTGGCCCAACACGATGATGATATCAGCGAAGAAGAAGGTAGCTGGGTTGATGAGTGCAATGACTGAG AAGGGTGTGGAGCCAAATTCGGATTCGTTGAATGAGGTTATTCAAGGTTTGTGCCGGGAATGGAGGACAAAAGAAGCTGA GGAGGTGTTTGAGGAGATGAAACGGAAGGGTTTTGCACCTGATGAGAAGACTTACACGTCTCTCATTGATTTGTTATGCG ACTACGACGATAAGACTGATAAAGCTGATAAGGTTTTGCGTGAAATGATTGATAGAGGATTTTCACCCTCAGTTGTTGAA TACAACAAGCTTATTCGTGCATATTGCTGTTATGGGTATTGCCAAACCCAGAAGCTGGAGAAGGCGCTTGAAATCAAGAA GGAGATGGTTGAGAAGGGCTTCTTGCCTGATGCTCACGCGTATTCGGTGCTTTTACGCTCGAAGCAAATACGGTCAAGCA TGTCAGAAGCTTTTGATCTCTTCCGAGAGATGCTTCGTGAGGGTGTGGAGCCAATGGCGTATGCTTATGTTAATTTGATG GATCCATATTGTCATAAAGGTGAATTCAGTAAGGCTTTTCATATGCATGATGAAATGATACACAAGGGTTTTTTTGCCTG ATTTTGTTACTAGGTTTTCACTGTCTCTTGTTACTTGCAACGCGCTTATTCACGGGCTTGGCTTCTTGGGGAGGGCTGAG GAGGCTCTGGCGATTTTGAGGGGAATGGCAGAGATGGGTTTGTCCCCTGATACTGTTTGTTATACCGCTGTTGTATTTGG GTTTTGCCGAATCGGGGAGCTGAGGAAAGCGTATGATTTGAAGCTGGAGATGGATGAAATGATTCTGAGTCGTAAGTTAG CTATCCATCCCCTGTCTGGAGACGTGTATTGGTCACTTATGGGCGAAGAAGGCGGCCTGTTGGATGAGGTTAATTATACT AGAGTGGTAAATGCTTATTGTGATGATTGCTTGATGAATTGTCACACTATGTTGATTCGCAACAACATGCTATCTATGAC TTGAGAAGAAAGCTAAGATAAGAGATGCTAAGGAGATGCTTCTGAGTTTTTTAGGTTCACTTTATATTTAATAGCATCTT AGTTTTGTGACTCAATATCTTTGCTTTCTGATGACTCAGATTATAAAGAATTTCTAATGGATGCTGCATTGTTGTGGATG TATGGAACCTGGCCTTGAATAGCTTGGTGAAGTCTATTCAGTGGGAGGTTCGTATTGAATTGGATGAAGTAATAATGGGG CTTAGTTTCAACTTCCAAATGATAATTAGAAGCTGACAAAGATTTTGGATTGCCTCATGCAACTTAGTTGTAGTTATTTA ATTGATCTGTTAGTTTTATACAATCTGCAATACACAGATTTAATCTACTATACTACAAGTTCAGTATGTATTTTCTTGAA TTAT
CDS sequence (LotjaGi4g1v0150800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCCCAACTCAATGAAGCTCCTCCGTCTTTCATTCACTGCCACCCTAAAAACCTTTCGCCGCCACATGCTCCGTAA CGTCGTGTCGCCGCCGAACGTTAACTCTTACAACGTCGTGATCCGAGGCTTCGCCGCCGCTGGGAGCTTAGAACCAGAAT CGTGGCCCAACACGATGATGATATCAGCGAAGAAGAAGGTAGCTGGGTTGATGAGTGCAATGACTGAGAAGGGTGTGGAG CCAAATTCGGATTCGTTGAATGAGGTTATTCAAGGTTTGTGCCGGGAATGGAGGACAAAAGAAGCTGAGGAGGTGTTTGA GGAGATGAAACGGAAGGGTTTTGCACCTGATGAGAAGACTTACACGTCTCTCATTGATTTGTTATGCGACTACGACGATA AGACTGATAAAGCTGATAAGGTTTTGCGTGAAATGATTGATAGAGGATTTTCACCCTCAGTTGTTGAATACAACAAGCTT ATTCGTGCATATTGCTGTTATGGGTATTGCCAAACCCAGAAGCTGGAGAAGGCGCTTGAAATCAAGAAGGAGATGGTTGA GAAGGGCTTCTTGCCTGATGCTCACGCGTATTCGGTGCTTTTACGCTCGAAGCAAATACGGTCAAGCATGTCAGAAGCTT TTGATCTCTTCCGAGAGATGCTTCGTGAGGGTGTGGAGCCAATGGCGTATGCTTATGTTAATTTGATGGATCCATATTGT CATAAAGGTGAATTCAGTAAGGCTTTTCATATGCATGATGAAATGATACACAAGGGTTTTTTTGCCTGA
Protein sequence (LotjaGi4g1v0150800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPNSMKLLRLSFTATLKTFRRHMLRNVVSPPNVNSYNVVIRGFAAAGSLEPESWPNTMMISAKKKVAGLMSAMTEKGVE PNSDSLNEVIQGLCREWRTKEAEEVFEEMKRKGFAPDEKTYTSLIDLLCDYDDKTDKADKVLREMIDRGFSPSVVEYNKL IRAYCCYGYCQTQKLEKALEIKKEMVEKGFLPDAHAYSVLLRSKQIRSSMSEAFDLFREMLREGVEPMAYAYVNLMDPYC HKGEFSKAFHMHDEMIHKGFFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 167 | 156 | 1.3E-30 | ||
| PANTHER | 32 | 165 | 134 | 5.6E-42 | – | |
| ProSiteProfiles | 33 | 68 | 36 | 5.579 | ||
| Pfam | 81 | 130 | 50 | 1.6E-15 | ||
| ProSiteProfiles | 82 | 116 | 35 | 12.518 | ||
| TIGRFAM | 87 | 118 | 32 | 3.3E-7 | ||
| ProSiteProfiles | 117 | 152 | 36 | 11.696 | ||
| TIGRFAM | 120 | 154 | 35 | 4.7E-6 | ||
| SUPERFAMILY | 136 | 258 | 123 | 1.8E-5 | – | |
| Pfam | 140 | 201 | 62 | 4.7E-8 | ||
| ProSiteProfiles | 153 | 192 | 40 | 9.043 | ||
| Gene3D | 168 | 262 | 95 | 6.2E-19 | ||
| TIGRFAM | 168 | 194 | 27 | 9.0E-6 | ||
| ProSiteProfiles | 193 | 227 | 35 | 10.117 | ||
| Pfam | 207 | 225 | 19 | 0.039 | ||
| TIGRFAM | 208 | 227 | 20 | 0.0028 | ||
| ProSiteProfiles | 228 | 262 | 35 | 9.251 | ||
| Pfam | 231 | 260 | 30 | 0.0026 | ||
| TIGRFAM | 231 | 260 | 30 | 6.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0150800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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