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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0151400 |
| Transcript ID | LotjaGi4g1v0151400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G16890.1 pentatricopeptide (PPR) domain protein 40; Swiss-Prot: sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial; TrEMBL-Plants: tr|A0A0R0IT60|A0A0R0IT60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0151400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:24995234..24995908) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGCTTAGAGGATTCACTCCCAACCTTGTTACTTTCAATACCCTTATTGGTGGACATTGCAAGGATGGAACAATAAT TAAGGCACGGGAGCTGCTGGTGATGCTTTTAGAGAATGGCCTTAAACCTGATATCTTCACTTTTAGTTCTATCATTGATG GTCTCTGTCGAAGAAAGATGACTGAGGAAGCTTTTGAATGCTTTACTGAGATGATTGAATGGGGGGTCAATCCAAATGCT ATTATTTACAATATCTTGATTCGGTCTTTATGCGCAATTGGGGATGTTGTGAGATCAGTGAAACTTTTAAGAAGAATGCA AAAGGAAGGAATAAGCCCTGATAATTACTCTTATAATGCTTTGATTCAAATTTTCTGTAGGATGAATAAGATTGAGAAAG CTAAAAAGCTTTTTGATTCAATGTCAAGATCTGGCTTGAATCCAGACAATTACACGTATAGTGCTTTTATAGAGGCACTG TCTGAATGTGGCAGAATAGAGGAAGCTAAGAAGATGTTTTACTCAATGGAGGCAAATGGCTGCTCTCCTGATTCATATAT ATGTAACTTTATTATTAAAACATTGGTTCGGCAAGACTGTATTGATGAGGCCCAAAATATTGTTGAAAGATGCAAACAGA GGGGAATATCTTTGACGTCTATTCCTAATTTGTAG
CDS sequence (LotjaGi4g1v0151400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCTTAGAGGATTCACTCCCAACCTTGTTACTTTCAATACCCTTATTGGTGGACATTGCAAGGATGGAACAATAAT TAAGGCACGGGAGCTGCTGGTGATGCTTTTAGAGAATGGCCTTAAACCTGATATCTTCACTTTTAGTTCTATCATTGATG GTCTCTGTCGAAGAAAGATGACTGAGGAAGCTTTTGAATGCTTTACTGAGATGATTGAATGGGGGGTCAATCCAAATGCT ATTATTTACAATATCTTGATTCGGTCTTTATGCGCAATTGGGGATGTTGTGAGATCAGTGAAACTTTTAAGAAGAATGCA AAAGGAAGGAATAAGCCCTGATAATTACTCTTATAATGCTTTGATTCAAATTTTCTGTAGGATGAATAAGATTGAGAAAG CTAAAAAGCTTTTTGATTCAATGTCAAGATCTGGCTTGAATCCAGACAATTACACGTATAGTGCTTTTATAGAGGCACTG TCTGAATGTGGCAGAATAGAGGAAGCTAAGAAGATGTTTTACTCAATGGAGGCAAATGGCTGCTCTCCTGATTCATATAT ATGTAACTTTATTATTAAAACATTGGTTCGGCAAGACTGTATTGATGAGGCCCAAAATATTGTTGAAAGATGCAAACAGA GGGGAATATCTTTGACGTCTATTCCTAATTTGTAG
Protein sequence (LotjaGi4g1v0151400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLRGFTPNLVTFNTLIGGHCKDGTIIKARELLVMLLENGLKPDIFTFSSIIDGLCRRKMTEEAFECFTEMIEWGVNPNA IIYNILIRSLCAIGDVVRSVKLLRRMQKEGISPDNYSYNALIQIFCRMNKIEKAKKLFDSMSRSGLNPDNYTYSAFIEAL SECGRIEEAKKMFYSMEANGCSPDSYICNFIIKTLVRQDCIDEAQNIVERCKQRGISLTSIPNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 97 | 97 | 1.8E-28 | ||
| PANTHER | 5 | 217 | 213 | 6.9E-60 | – | |
| Pfam | 8 | 57 | 50 | 1.8E-14 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.192 | ||
| TIGRFAM | 11 | 45 | 35 | 3.8E-6 | ||
| ProSiteProfiles | 44 | 78 | 35 | 12.847 | ||
| TIGRFAM | 46 | 80 | 35 | 3.2E-10 | ||
| SUPERFAMILY | 52 | 211 | 160 | 8.34E-6 | ||
| Pfam | 75 | 107 | 33 | 1.5E-8 | ||
| ProSiteProfiles | 79 | 113 | 35 | 11.893 | ||
| TIGRFAM | 82 | 114 | 33 | 1.2E-8 | ||
| Gene3D | 98 | 221 | 124 | 1.5E-35 | ||
| ProSiteProfiles | 114 | 148 | 35 | 13.274 | ||
| TIGRFAM | 116 | 149 | 34 | 4.9E-10 | ||
| Pfam | 117 | 161 | 45 | 1.5E-15 | ||
| ProSiteProfiles | 149 | 183 | 35 | 12.606 | ||
| TIGRFAM | 151 | 185 | 35 | 8.6E-10 | ||
| ProSiteProfiles | 184 | 218 | 35 | 8.495 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0151400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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