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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0153300 |
| Transcript ID | LotjaGi4g1v0153300.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LAG1 longevity assurance-like protein; TAIR: AT1G13580.1 LAG1 longevity assurance-like protein; Swiss-Prot: sp|Q6NQI8|LAG13_ARATH LAG1 longevity assurance homolog 3; TrEMBL-Plants: tr|I3T6V0|I3T6V0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0153300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:25493745..25495933) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACCGTGGTTTACTGATACGAAAAATTTCTGGGTGGGGCCAGGGAGTCAGGTCTGGCCAGATCAAAAGATTAAGTAA GATTTCTTCTTAACATACCCAATTATTGTGGCAATTCAGTTGCAATTTTTAATCTATCTTCTGTAATAATTTTTCCTTTG GGAAACTTAAGTTTCCTTATAGAGTTGTGACTTACTAACATTTCAGGTTGAAATTGAAGACAGTCTATATGTATGCTGCT GGATTTTATTCATACTCCATTTTTGCTTTAATATTTTGGGAAACAAGACGCTCAGACTTTGGGGTTTCCATGAGTCATCA TGTCGCTACTGTCATTCTCATTGTGTTGTCATACATTTTTAGGTATGTTTTTATTGACTTCAATTTGTCTTGTCATCCAA GATTTTTATGAAATTCTGAAGTCACTTTGTTCCAAGCTCCTTGTCAAAATGGTTAAAGGGGGCAATCTTGTCTTTTATTT AATTTTATCTATGTGCTTTTTCCCAAGTTAAGCCATGTAATGAATTTTACTGACTTGGTCTTAATGGAAAATAGAATGTA AAATACTATTTTAAAATTTTAAGCAACATTTTTAAATTATGAAGGATAACAGAATATCACCAGACTTGCCAAAACTAGAA AGAAAAGCAAAATATTTGAAATGTGTGAGATGTATTAAGGATGATGAGGGAAAAGTATTGGTCATTGAACAACATAGAAA GATGGAGTTAATTCCATACCTTTTTTAACGAATGACACGAGTTCTCTGTGAGATGAAGTACTGAAGATTCCCCTATAACT ATAGGTGTGCATCAAATCTTTAAGGCCCCTAATCCTTTTATTTTATTCTTGATGTGTTTCCTGAACATATCCAAGAGATG ATGCCTCGTTGCGTGCTTTTTTTATGGATGATATAGTTTTAGTTGGAGAATTAAAAATCAAGAGAATAAATGTAAAGTTA GAGACATGGAGACAAGCATTGGAAACACATGATTCTCGCCTACTTTGAAGTAAAATAAAGTAAATGAAATGTAAATTTAG CATGATACACATAAGTCATCACAGCCTAGAAAAATTGGTGATCATCCAATACCACAAGCATCACGACACGGCTCAAGTTT CTTTTTCCCATCATACAAAATGATGAGGGAGATAGAGGGAGATGTCAATCATAGGATCCAAGTAGGGTGGATAAAATAGA GGAATAATTTGGGTGTGATTTGTGATAAAAAAAAAGTAACCCTTGAACTTAAATGTAAAATTTGCCGCACAATTATAAGA CTTAATGTTGTGTAGAACTGAATCTTGGGCAATATAAAGCCAGCAAGAAACTAAACTTGGTTCCGTAGAGATAGAATACG ATAGATGAGTGAGTACACTAGAAGAGATAGGATGGGGAATACAACTATTAGATAAAAATTGGAGTAACTCCCATTGAAGA AATGATGGTAGAGTCTCGCTTTAGGTGGTTTGTTCATGTAATAAGAAGGCCAATAGACAGAAGGATTGATCAGATGAAAG ATATTTCTATAGCTAAAGGTAGACAGAGACCAAGAAAAACTATAAGCCAAATCATTTAGATATTTAGAGGTAAACAATTT ATCCTTAAATTTAATACACTACAGAGTTTTATGATGTCACATTATCCATATAGCAGACACCACCTGGTGGGAAAAAGCTT CCTTATTGTGTGTTTTAACTACTGCTGCACACACGTGAGACAGGGAGAGGGAACAAAGTATCTATGGCCCACACTAATTC TATTTTATTTGATTATGCTTCTCTTAGAAAATTCTCTGTTACAGTTTTGTGTTTCTCTTCTATGTTCAATACATTCAGGT TTGCTCGTGTTGGATCAATTGTTTTAGCAATACATGATGCTAGTGATGTGCTTCTGGAGATAGGGAAAATGTCCAAATAC AGTGGTGCTGAAACAATGGCTAGCATTGCATTTATTTTATTTGTTTTCTCATGGGTCATATTGCGCCTCATTTACTACCC ATTCTGGATTCTTTGGAGTACAAGGTTTGTAACAGTTCATTTCCCAGTTTACATCATTTTTGCTTCTGCTCTCTCTGGCC ACATTTATTATGTGGCTTCTTATCTAGGTGAATAACAATTTGGTGTCTCTACATAAGTCCATATATTTATTGAAACTAAA ATATATTTACCCTAACACTGGAAGGATGA
CDS sequence (LotjaGi4g1v0153300.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCGTGGTTTACTGATACGAAAAATTTCTGGGTGGGGCCAGGGAGTCAGGTTGAAATTGAAGACAGTCTATATGTA TGCTGCTGGATTTTATTCATACTCCATTTTTGCTTTAATATTTTGGGAAACAAGACGCTCAGACTTTGGGGTTTCCATGA GTCATCATGTCGCTACTGTCATTCTCATTGTGTTGTCATACATTTTTAGGTTTGCTCGTGTTGGATCAATTGTTTTAGCA ATACATGATGCTAGTGATGTGCTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAATGGCTAGCATTGC ATTTATTTTATTTGTTTTCTCATGGGTCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGGTTTG TAACAGTTCGATGA
Protein sequence (LotjaGi4g1v0153300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRGLLIRKISGWGQGVRLKLKTVYMYAAGFYSYSIFALIFWETRRSDFGVSMSHHVATVILIVLSYIFRFARVGSIVLA IHDASDVLLEIGKMSKYSGAETMASIAFILFVFSWVILRLIYYPFWILWSTRFVTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| ProSiteProfiles | 1 | 137 | 137 | 20.019 | ||
| SMART | 4 | 137 | 134 | 8.6E-12 | ||
| PANTHER | 14 | 134 | 121 | 1.0E-67 | ||
| PANTHER | 14 | 134 | 121 | 1.0E-67 | – | |
| Pfam | 20 | 133 | 114 | 1.2E-29 | ||
| TMHMM | 23 | 42 | 20 | - | – | |
| Phobius | 24 | 42 | 19 | - | – | |
| Phobius | 43 | 56 | 14 | - | – | |
| TMHMM | 52 | 69 | 18 | - | – | |
| Phobius | 57 | 81 | 25 | - | – | |
| Phobius | 82 | 101 | 20 | - | – | |
| Phobius | 102 | 122 | 21 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 123 | 137 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0153300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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