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LotjaGi4g1v0163000.2

Overview

Field Value
Gene ID LotjaGi4g1v0163000
Transcript ID LotjaGi4g1v0163000.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Myb family transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|A0A151UD74|A0A151UD74_CAJCA Myb-like protein J; Found in the gene: LotjaGi4g1v0163000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:30402644..30411760) extracted from Lotus japonicus Gifu genome v1.2.

TTCAGATTATCTTAAATGCCCTTCACTAGGATTAGCCTTTTTTGCTTTCAGATTTTATTTTATTTTTAATTAGCCTTGAA AATAATTCAAAACAAAATCTTCGGAAATATTTAGGATTTCCCGTCCTAAATCTTGAAAAACGATGCATCATTAAGTCTTT CACAGTCAGAAATAGGGTTTTAGTTGGTGAAAGAGAAAATCAAATTTATGTTTTTAGTTGAAGAGTTAGAATTAGAAAGA GCTTGGGAGTTCTTCTTGTAGCTTTGGTTTCCTACTGTTTCTGATGAATGATTGCATGCTAATCGAACTAAGGTATGTTG ATCTGGGATTCTTAATGGGATTTTGACTCAAACTTTTCAGATTCGGCATTTATTGATTACTAATTTTTCCGATCACTATG TTATTCTCATCATAACTTTTCGTTTTTCTGAAACTTCAATCAACCCTAGAACTCTTGTTGATTCCTCTTTCTTTCTTCTG GCCTTCATGGGTTGAAGGTTTTGTGGTCCTGTGCTGTTAAAACTGTTCTAATCAGTAGGGAACTGGATAACTTGGAATTT TTTATTTTTTATTTTTTATTTATTTTTAGTATGGGGATACTGCAATTTGAATGCTCTTGTTATCCATGACAGTATTCTCG ATTTTTCTACTTTGTTTGTTTGCGAAATTTCTCTTTCGCATATTAGAAATCCTGAGCCCTAATTACCATCATGACGGTGG TGTTCACATCAATTTCCCATATATTGCATCTATCTATGCATTTATTGTTTTCAGATATTTCTCATGCTCTGACTGTACTT CACTGACTTTTTCATTTATCCATAGGTAAGCAATTCACAAGAGTCCAGTTGGTTTGAAATCACCATTGAAATTTACTTAC TTCAGATAGTTATGGGATTTAATTGGTATTGAACTCTGTCCAGCTTCCTGCTATTTTCTGCTCGTGTTGGCTATAATTCG AAGGGGATTGTTCAAGCATACCATCAAAGTTTGTATTATAGGTACTCCTGTAATCTAGATCTGTAATTCCCTTAAAAAAA TCCGATGAATTTGATGCATTTAAGTTGTGGGTTTGACCTAGATTGCTGAGCTGTTAGATAGAAACTTTACCCCTCCTTCC TGAGGCGAAATTCCGTAATTTATACAAACAAGGCTAGATGACTGTGGATGAAGTAGGTAGTAGTAGCTCTGAGTGGAGCA GAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAACTTATCCTGAGGATGATTCAGATCGATGGGAGAAGATTGCGGCT GATGTACCGGGGAAAACTTTAGAAGAGATTAAACATCATTATGAGCTTTTGGTTGATGATGTTAACCAGATTGATTCTGG TTGTGTACCTGTGCCATCTTATAATTCCTTTTCCGAGGGCTCAAGAAGCCATGCTAGTGATGAAGGAGCTGGAAAGAAGG GGGGCCATCCTTGGAACTACAACAGTGAGTCTAACCATGGAACTAAGGCTTCGAGATCTGATCAGGAGCGACGAAAGGGT ATTGCTTGGACTGAGGAAGAACACAGGTTAGTTTATCTTTGCTTAAATATATATGCTAGTAAATAAATATTGTAAACACC CTAATGTAGGTTACTTATTTTAATTTACTACTTTATTTATCTGATTCTGGCATTCATATCCTAAGCAATCTGAGTATCAT GGTATACTCATACAATTGGAAGCTCCTTTTATGCCCTAAAATTCTGATCCTAGTTTAATTGTCAGTTATCTTAATTCTTT GAATTTCGCAGTTATTTGTAATAAATGTTTTACGAAACCATTGCGTCTCGTGCTTCTTAACTAGGTTGTGCCATTGTTTT ATCGTTTTAGTTTAGGATGAATTAAATAACATCAAAGGACTTAATCGGTAATTTCAGTGTTGATCTATGTTTTAATTGAG TTCCACTAGTTCCATATTTACAGACATGGTGATATTAACTAGGGTGCTTGCTCTGGTATGGGAGTTAAGTTGGGTGTAGA CTACTTTAGTGAGTTGACCCAATAAAATTAAGCTGATATGTACAGTCACTAATAAGTTAATTTCTCTTATAAAAATTATG CTTTACACCTTCAGTTTTCAATATTTTCATATTTAACCCCATTATGTTTAGGTAACAGTAAATCTAAATGTTTAACCTGT GGTAAATTAAGCACCTATTAAGGTTTTAGTCTATGAAGGTTTTAGTGAGTCATTATCTCAGTGTGAAATCTGAGGCTTCT CTCTTCGAACATCGAACCACCCACACTTCTCTCAACCGAACTACTTTCAAACCCTAGATACAACGGTCGCAGGGATGGAG TCACATAGTGACGGTTGCAATAGTGGATGAAAAGCTCTCACCTTTTCATCATAAATCTCTCACCTTTTCGCAGGAATGGG GATACACAGCGGAGAAGAGTCTAGATAATAAAACCCTAATGGACAAAAGGTGAGTTTCAACAAAGTAAGCCAGAAGGGCA TGACATTGTGAGGAAGAAGTGAATAATTTGGGGGTTTAGTCAAACTAATAAATATTAATAATTTTATGATGCTAATTTAG AATTATATAAATTAAAGATATTTACAGGTGTAAATACTAAATATGTAATTGGTACATGCCATCCTTGTATCATACTATAC AAATTTTCCTGTACCAGAGAATTCACTATAGTAATTATTTCTAATGTGGTCTTATATGGTCTCATTTGCCCCATATAGAA CCATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGG CCGCTATTCTGAATTTTTTTATGTAATTTTATATCATTAATAGTTTAATACTATATACATATAAATAGCAAACAATGTCA AATATTGCCTAAAATTCATAACATTCATAATAGAAATAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTC TCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATG GCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCCCAACGATTTAAAACAAAGAGGCTTGAGTCATTTTCTCCTTCG TTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACGACCGCTA TTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTCCGCTACGCCGCTATAGCGCCGCTATTT GCCGCTATTGACTACTATGTATAGAACTAAGGTATTAGAGTGATGCCGCCAATGAAGGTTGACTCAACTAGTAGACTTGA AAAGTGTGGGATAAGAAGTCTAGTGGTTCTGCACCTGTTGGTTATTTATATTTAAGTCCTTTCTGAGCCTTGTGGCTTTC CTTTGAATGGGGCAAACTTCCCTGCCTCTTAATATTTTACTCACAAATGAGAAAAGTGATACCAGAGTTAAAATATGCAC ATCCTTAATTATTTCTCTGTTTTCTCCTAATATTTAGGACCACACCCAAGAATGTGCGTGTCAAATGTTCTCCTATCTTA TATTTAGATGGAAGAAAACAGTTTGCCTCCTTTAAAATTTGTTACCCTGGTCTAGGGTTTACTTTTTTAAAGTTAGGTGC AATAGCTATTAGTAGAATTAATTTTGAAAGAATGCATTTTGTTAAAATGATTAGTGTTTGGAGATGATATTGTAAAAGTA AGTTTAGAAGAATATTTTTTTTGGATGGTAAGTTATAATTACTTTTGAAGTGTAAATATCTATCTTGTGGGTCCAACACA ATAGTTTCTCAACAGAAAAAAAAGAAGAGATTTTCACTTCTCCCAAGAGGTACTCTCTACAAACCTTCAATATACTTTTA GTAAACGAAAAATACAAACAAACAACTTATGTAATTTTAGTGGAAGCCCAAACATACATATCAGTATGTAACCAAACAGG CTCGTAATTCTTTTCCGCTGCACCAGTTAATGTTGTTTGATACTAGTGAAAGAGAAATGATCTCAACTTGTATTTTGTTG AATGTGTAAGTGGCAGACTGTAGAATATATGTACAAGTTGAATGAAGAAGCTCCTAAATTAGTGGGGGATTTCCTAGATT AGTGGCTTCATTTTGGTAGCATACCTAACTCCTAAATTAGTGCTGGACATAGTGCCTTTAATTAAGGCCTAAAATCAGTA CGTAATACAATCAGTATCAGATATTCAACAATTCTTATTTTCTGCTTAGTGTAATCCTGTCCATCATTTCTTTCCTGTAT CTATCATACTCAAATGACGTAATTTATCTGTTTTTGATACATCAGTTAGTTGTGCTTATCACAAATCCAGTTTTGTCCTG ACTCGTTACTGTGGAAGAGGCAATTCTATCTATAAGCTTACTTGTTAACCATTTTGTCCACCCACCCCTGTGATTTCTGA AAGTTGAAATACTCTTGTCATAGTTTCTTCTTAACAATCATTGTCTAGATTCTAGATTAATCTTGTGATCCTACCTACCA ACAATCAATCAACTCAATTTGGGCTTGAGGTTTTGGGATTTTGACACTAAGATCAGATGTGTGTGTGTTGGGGGGGGGGG GAATAGCTTGAAACTCCTAAGGCCTGTTTGGTTTGAGAAAATGTTTTCTTGTTTTTACTTTTAATGACATGAATGTGACT TTATTTTCACCATATTTTGTACTTTAAAATATTTGTGTAGAAAACAGTGAAAAATTTATTTCACTCTTTCCTATACAAAT CTTTAAAAACAGAAAACAAAGTAAAAGATGAAAACAAGAGATGAAAATAGAAAACATTTTCTCAATTCAACCAGCCCTTA GTTTTTCTATGGTTTGTGGTAAATATATTGTGTTGAAAATATGTTTATTTTGCTAATGCTGCATTGGAGAAGTTATAGTA TATCATTTTAAAATTATGTCTGGTATGATAGTTTTGAGATGTGTACCTGAAATGATACACTGAGAAGAAAGGTCATTGTT AGTATGGCTGAAAATGATAATCCCTGCATGAAACAACCCTAGGAGGTTATAAGAATTTTAATTAGAGAGGGATCAGAGTA TATCAGTTTGATTTTGCAAGCATGAGCGGTGGCTGTTAAGAGCTTTGTGGAACCTGATTCTTTGAATTCTGTGGTTGAAA CTTTTGCTCTGGAAACTGTTGTGGAAATTACTGTTGAACTCCAAAAGAATGTCCCCCAAAACCTCCAAAAGACTGCATAG GCCGAGCAGTAGAATGTAAATAGAAGCCACGATTAGGATTTCAATAGAAATTGCCGTGAGAGGTAAACTGTTGCTGTTGT CGTGCAAGACAATTTTGATCAAAACTGTAATAACGCACCGAAAAAAGTTGTCCATATTTCAAACAAACTTGACATTGAGT ACTTGATCTCCCACGGTTGCGACCTCCTGTAAAACCTCGACCACAACCCCTAGATTGAAAGCCTCTTCCATGATTTTAAT GATTAGCAAAATTAGAGGATTGTGCAGTAACATGAGCTTGTGAATTAGAAGCAGATTGTTGAGGTTGATCAGTTTGAGAT AATTGAGCCCCTTAAGCAAGATTAGTAATGCTTCAATTCTTGCCTCTTGAGCCACCACATTTTCTTTCTATTCTTCTAAA TTCTTGCCTCTTGAGGGTTAGTAGTGCTTCAATTTCACTATTATCAATTGTTAACAGCTTAAACCTACACAGAAATCAAA TTGGCTGTGTCCTATAATCAGCCGGTAAGCCTTCAAGTATTATATCTATTTACTCCTTGTATGAAACTGAATCTCCTATT GCGTGAATAAAGAGTCGGGGATACTCTTGATACGAAGTAGAAATTCAGCAATTGACTTAGAATACTAAGTTTTATTCCTT ATCTCTGTCTGCAACTTCCTTGCTTTGGCTTCAGTTTAAGAATGGACGTGAGAGCTGGTAAGAGTGCTGGCATCCAATTA CCTTAATAAAAATTGGCCTAGTAAGAGAACATAGGTCCAAGAGAGCAATAATGCATCTTGTTGTTCCCAAGAAAGATACC CAGGATTCACTGTATTAGTGGTTGCGATCAAGTTCTGTCAGAAATGTTGAAGGAATTGAAGGATTAACTAAGGAAACATG AAGCCTATGACCATTGACCAGTAGTCACTGGCTCAATTTGTTGTTTCTGATACTCTTATCGGATATGTGCATCATTGGTT ACTTTCATTGCATTTTATTCTTTCTACCTTAATTCATATCCATAAAGCTCCTAGCGCTCTTTAAGCATTATCTATAAAAA TACTTCATTATGTTTGAGGTTGTCATGCAAACTTCTTTTCTAAACCATACATATAACTTTATGGTGTTTCATGCTGGGGG TTATTTTCTTGTTCTTTATCAGATCTACAGTGATAAATTCTGATCCCTCTACTCAATTTGACACCTGACCCATCATCCCT CTACTCCCTCTTAGAATAATAAATAACATTTTGAATTATTTAAGTGAACCCAGTTTTTCTACTACCAAAAAATTGACACC TTCCTTCCATAGTTGGTATGGATTGGGGAATAAGCTACGAAGTCAGTTTCTTTCTGCCATGCGGAAATCAGAGACTGGCC AATGTCAATACTTCTCTCAAATAATCATAAGGTCCCCTATTCTTATTAGGCCATTGGCTATACAAGTATTTGTAAGCATG GGTTGATAGCAATTATTGTTCCATAGCATAGGTGGACATACTTCGGTAATATTAAATAGATTCGGTTTGTTATTGGATCA AGTTGTCTCAATATGGTGTTCTTCAGCAGCCTTCGGGGCTATAAAAGATCATGTTTGACCCTTGATATCCCAAATCCAGT TTAACCCTAATTACTCCAGATGAAGATTTACCCTGGTTATTCCAAATTTAGTCTGGCTCTAGCTATCCCAGATTCTGTTT GGCGGCCCGGGCTGTTCTAGATTAGCGATGAATTAGCTGCGATTGTTACCGGTCTCCCATTGTGAATCATACCAATGGTG AATTCTCCTATCTGACTGATGAATCCTGCCATGATGAATTCCACGGCTCTGATGTACAGCAGTCTTAGTTTCAATTTATA TTTATTTTATTTTTGGGTATCCTAAATTTTCTTGTTAAGCTTCAAATGTTTTTTTTTTTTGAACTCTGTTAAGCTTCAAA TGTTGTTCGTGATAGATTTGGAGAAGTTTGCTGCGTATAATTGCTTCCTTAAATTTTCACCGATAATCATTTCACTTTGT CGATTCCTTGGTTATGCCACATTCCAACCAGCTCTTAAGGTTGATGGTCATCCCATCCTTCATGCTGAGTTCTCTTTTTA GCATTGCTCATCTCTCCAACGTTTCCCACATCCTTAAATTGCCTTTATAGCTATATTAATTATCCTTTTTAAGAGGTTAT TTGTAACAAGCTTAATGTTCAGTAATTTTTAGCATGCGGGGAAATGTTGGAATATCTAAAAAAAGAAAGATAGCGTACAA GAATTGTATATTATAGTAATTTAGAATATCTTTGGTTACTTCTTAGGATTTGGTTTCATATTTTATTATATTTCATGTTT TGGTTCCTTAATCCTTATTTAATTAGGATTAGGAGACTAGTATTAATATAAACTAAATAAGGATTGATTCTTAATCTTTT GTGTCATCATAAAAGCATAATCACAATTTGAAGTCTTCATTCTTTCTCTCCTCTCCCTCCTTGTCTAAAACTATATATAT TACATCCCGTTCCACAGTACCTATGATATCTTTCTGGTTTTCAGTTTGATGTTCAGTCAAGCTAACATGAATGATAGTAA TATTGATGATCGAGTTTATTATATCACTGCCAATAACATTAACCGCAGAGTTAGTAAAGATGCAGCATAGCTGCAACTGG TAGCACCACTACCTGTCATAATTGTCAAATCAAAGTGCTAATTCTAATCCTTGTATTGGGAATGCTATCTTCATTTCTCA TGTACAAGTTTGCTAGTGGTTATCTCTTAGAATTTATAAACTGAAATCAGTGTGTAGATGATACTGTTTTATGGTTATTG ATGTTCAATTAGAGCATAATTTTTCTTTTGGTATCGTGACATGCTTCGTTATGCTGAACTTTCTTTGACCTAGTTGTTTT TGTTTTCAACTTTTCAAATTTGTTGAACAGATTGTTTCTTCTTGGTTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTA TATCAAGGAACTTTGTGGTGACAAGAACACCAACACAAGTAGCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAATTCG ATGAATAAAGATAGAAGGCGATCCAGTATACATGATATCACCAGTGTGAACAATGGAGACATTTCAGCTCCTCAAGGACC AATAACTGGTCAGGCAAATGATTCTGCAGAAAATTCATCTGGAAAATCATCCAAACAAACCCCTCCAACCCCAACTGGGG CCCCAGGTGTTGGAATATATGGTGTTCCTACCATTGGACAACCTGTCGGAGGACCCCTTGTATCTGCAGTCGGCACCCCA GTTAATCTTGCTGGCCCGGCACACATGGCATATGGTCTTAGAGCCCCGGTTCCTGGGGCTGTGGTTCCTGGGGCACCAAT GAACTTGGGTCATGTTCCATACCCAATGCCTCATACATCTGCTCATAGGTGAAGTGCTTTTTAGAGCCATTTTGTACAAA AAAACAGAAGACTAGATGGTTTCTGAACTGAATGTAATTCTTTTCTTATTCCTGGGGCTGTTGCTTATATGCAACAAGAG TTTTCTGCTCAATCAATTATTTCGAATAAGCCATACCGTGAAGCAATTTAATGTTTCTATATTCAGTGTATTGGCTGCCA TAGGACAGCATGAGTGTATGTTGGTTATGTAGGCATTTCAATTATTAGTTAGTTATAAAGTGATCTGTGCTGTAGAGGAA GGTTCTGTAGATTTAGATTGCTAAATTATTATTGTATTTTGTTTTGGTTTTAGTAGACTCCGCATTTACCTTCACTTACT ATCGAGTTGCAATAATGGGCAATTTGGCATGCAATCTTACAGCACATTTCAGTTCACTTTGGTAGCATAGCTATGAA 

CDS sequence (LotjaGi4g1v0163000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGTGGATGAAGTAGGTAGTAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAAC TTATCCTGAGGATGATTCAGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAAACTTTAGAAGAGATTAAACATC ATTATGAGCTTTTGGTTGATGATGTTAACCAGATTGATTCTGGTTGTGTACCTGTGCCATCTTATAATTCCTTTTCCGAG GGCTCAAGAAGCCATGCTAGTGATGAAGGAGCTGGAAAGAAGGGGGGCCATCCTTGGAACTACAACAGTGAGTCTAACCA TGGAACTAAGGCTTCGAGATCTGATCAGGAGCGACGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGATTGTTTCTTC TTGGTTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCAACACAAGTA GCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAATTCGATGAATAAAGATAGAAGGCGATCCAGTATACATGATATCAC CAGTGTGAACAATGGAGACATTTCAGCTCCTCAAGGACCAATAACTGGTCAGGCAAATGATTCTGCAGAAAATTCATCTG GAAAATCATCCAAACAAACCCCTCCAACCCCAACTGGGGCCCCAGGTGTTGGAATATATGGTGTTCCTACCATTGGACAA CCTGTCGGAGGACCCCTTGTATCTGCAGTCGGCACCCCAGTTAATCTTGCTGGCCCGGCACACATGGCATATGGTCTTAG AGCCCCGGTTCCTGGGGCTGTGGTTCCTGGGGCACCAATGAACTTGGGTCATGTTCCATACCCAATGCCTCATACATCTG CTCATAGGTGA 

Protein sequence (LotjaGi4g1v0163000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVDEVGSSSSEWSREQDKAFENALATYPEDDSDRWEKIAADVPGKTLEEIKHHYELLVDDVNQIDSGCVPVPSYNSFSE GSRSHASDEGAGKKGGHPWNYNSESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQV ASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQANDSAENSSGKSSKQTPPTPTGAPGVGIYGVPTIGQ PVGGPLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNLGHVPYPMPHTSAHR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 8 63 56 9.704
SMART 9 61 53 1.8E-10
SUPERFAMILY 11 67 57 1.66E-11
PANTHER 11 295 285 4.9E-125
Pfam 11 55 45 3.0E-7
Gene3D 11 59 49 1.2E-21
PANTHER 11 295 285 4.9E-125
CDD 12 59 48 4.17428E-10
MobiDBLite 77 120 44 -
ProSiteProfiles 115 172 58 18.172
SUPERFAMILY 118 173 56 4.19E-17
SMART 120 170 51 7.6E-11
TIGRFAM 120 170 51 2.7E-17
Gene3D 122 174 53 1.1E-17
Pfam 123 167 45 1.8E-11
CDD 123 168 46 1.07963E-10
MobiDBLite 178 230 53 -
MobiDBLite 185 224 40 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0163000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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