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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0163000 |
| Transcript ID | LotjaGi4g1v0163000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|A0A151UD74|A0A151UD74_CAJCA Myb-like protein J; Found in the gene: LotjaGi4g1v0163000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30403069..30410603) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGTGGATGAAGTAGGTAGTAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAAC TTATCCTGAGGATGATTCAGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAAACTTTAGAAGAGATTAAACATC ATTATGAGCTTTTGGTTGATGATGTTAACCAGATTGATTCTGGTTGTGTACCTGTGCCATCTTATAATTCCTTTTCCGAG GGCTCAAGAAGCCATGCTAGTGATGAAGGAGCTGGAAAGAAGGGGGGCCATCCTTGGAACTACAACAGTGAGTCTAACCA TGGAACTAAGGCTTCGAGATCTGATCAGGAGCGACGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGGTTAGTTTATC TTTGCTTAAATATATATGCTAGTAAATAAATATTGTAAACACCCTAATGTAGGTTACTTATTTTAATTTACTACTTTATT TATCTGATTCTGGCATTCATATCCTAAGCAATCTGAGTATCATGGTATACTCATACAATTGGAAGCTCCTTTTATGCCCT AAAATTCTGATCCTAGTTTAATTGTCAGTTATCTTAATTCTTTGAATTTCGCAGTTATTTGTAATAAATGTTTTACGAAA CCATTGCGTCTCGTGCTTCTTAACTAGGTTGTGCCATTGTTTTATCGTTTTAGTTTAGGATGAATTAAATAACATCAAAG GACTTAATCGGTAATTTCAGTGTTGATCTATGTTTTAATTGAGTTCCACTAGTTCCATATTTACAGACATGGTGATATTA ACTAGGGTGCTTGCTCTGGTATGGGAGTTAAGTTGGGTGTAGACTACTTTAGTGAGTTGACCCAATAAAATTAAGCTGAT ATGTACAGTCACTAATAAGTTAATTTCTCTTATAAAAATTATGCTTTACACCTTCAGTTTTCAATATTTTCATATTTAAC CCCATTATGTTTAGGTAACAGTAAATCTAAATGTTTAACCTGTGGTAAATTAAGCACCTATTAAGGTTTTAGTCTATGAA GGTTTTAGTGAGTCATTATCTCAGTGTGAAATCTGAGGCTTCTCTCTTCGAACATCGAACCACCCACACTTCTCTCAACC GAACTACTTTCAAACCCTAGATACAACGGTCGCAGGGATGGAGTCACATAGTGACGGTTGCAATAGTGGATGAAAAGCTC TCACCTTTTCATCATAAATCTCTCACCTTTTCGCAGGAATGGGGATACACAGCGGAGAAGAGTCTAGATAATAAAACCCT AATGGACAAAAGGTGAGTTTCAACAAAGTAAGCCAGAAGGGCATGACATTGTGAGGAAGAAGTGAATAATTTGGGGGTTT AGTCAAACTAATAAATATTAATAATTTTATGATGCTAATTTAGAATTATATAAATTAAAGATATTTACAGGTGTAAATAC TAAATATGTAATTGGTACATGCCATCCTTGTATCATACTATACAAATTTTCCTGTACCAGAGAATTCACTATAGTAATTA TTTCTAATGTGGTCTTATATGGTCTCATTTGCCCCATATAGAACCATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGC CGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTATATCAT TAATAGTTTAATACTATATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAAT AAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTG AATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCC CCAACGATTTAAAACAAAGAGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGA TCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCA GGGAGCCGCTCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGTATAGAACTAAGGTATTA GAGTGATGCCGCCAATGAAGGTTGACTCAACTAGTAGACTTGAAAAGTGTGGGATAAGAAGTCTAGTGGTTCTGCACCTG TTGGTTATTTATATTTAAGTCCTTTCTGAGCCTTGTGGCTTTCCTTTGAATGGGGCAAACTTCCCTGCCTCTTAATATTT TACTCACAAATGAGAAAAGTGATACCAGAGTTAAAATATGCACATCCTTAATTATTTCTCTGTTTTCTCCTAATATTTAG GACCACACCCAAGAATGTGCGTGTCAAATGTTCTCCTATCTTATATTTAGATGGAAGAAAACAGTTTGCCTCCTTTAAAA TTTGTTACCCTGGTCTAGGGTTTACTTTTTTAAAGTTAGGTGCAATAGCTATTAGTAGAATTAATTTTGAAAGAATGCAT TTTGTTAAAATGATTAGTGTTTGGAGATGATATTGTAAAAGTAAGTTTAGAAGAATATTTTTTTTGGATGGTAAGTTATA ATTACTTTTGAAGTGTAAATATCTATCTTGTGGGTCCAACACAATAGTTTCTCAACAGAAAAAAAAGAAGAGATTTTCAC TTCTCCCAAGAGGTACTCTCTACAAACCTTCAATATACTTTTAGTAAACGAAAAATACAAACAAACAACTTATGTAATTT TAGTGGAAGCCCAAACATACATATCAGTATGTAACCAAACAGGCTCGTAATTCTTTTCCGCTGCACCAGTTAATGTTGTT TGATACTAGTGAAAGAGAAATGATCTCAACTTGTATTTTGTTGAATGTGTAAGTGGCAGACTGTAGAATATATGTACAAG TTGAATGAAGAAGCTCCTAAATTAGTGGGGGATTTCCTAGATTAGTGGCTTCATTTTGGTAGCATACCTAACTCCTAAAT TAGTGCTGGACATAGTGCCTTTAATTAAGGCCTAAAATCAGTACGTAATACAATCAGTATCAGATATTCAACAATTCTTA TTTTCTGCTTAGTGTAATCCTGTCCATCATTTCTTTCCTGTATCTATCATACTCAAATGACGTAATTTATCTGTTTTTGA TACATCAGTTAGTTGTGCTTATCACAAATCCAGTTTTGTCCTGACTCGTTACTGTGGAAGAGGCAATTCTATCTATAAGC TTACTTGTTAACCATTTTGTCCACCCACCCCTGTGATTTCTGAAAGTTGAAATACTCTTGTCATAGTTTCTTCTTAACAA TCATTGTCTAGATTCTAGATTAATCTTGTGATCCTACCTACCAACAATCAATCAACTCAATTTGGGCTTGAGGTTTTGGG ATTTTGACACTAAGATCAGATGTGTGTGTGTTGGGGGGGGGGGGAATAGCTTGAAACTCCTAAGGCCTGTTTGGTTTGAG AAAATGTTTTCTTGTTTTTACTTTTAATGACATGAATGTGACTTTATTTTCACCATATTTTGTACTTTAAAATATTTGTG TAGAAAACAGTGAAAAATTTATTTCACTCTTTCCTATACAAATCTTTAAAAACAGAAAACAAAGTAAAAGATGAAAACAA GAGATGAAAATAGAAAACATTTTCTCAATTCAACCAGCCCTTAGTTTTTCTATGGTTTGTGGTAAATATATTGTGTTGAA AATATGTTTATTTTGCTAATGCTGCATTGGAGAAGTTATAGTATATCATTTTAAAATTATGTCTGGTATGATAGTTTTGA GATGTGTACCTGAAATGATACACTGAGAAGAAAGGTCATTGTTAGTATGGCTGAAAATGATAATCCCTGCATGAAACAAC CCTAGGAGGTTATAAGAATTTTAATTAGAGAGGGATCAGAGTATATCAGTTTGATTTTGCAAGCATGAGCGGTGGCTGTT AAGAGCTTTGTGGAACCTGATTCTTTGAATTCTGTGGTTGAAACTTTTGCTCTGGAAACTGTTGTGGAAATTACTGTTGA ACTCCAAAAGAATGTCCCCCAAAACCTCCAAAAGACTGCATAGGCCGAGCAGTAGAATGTAAATAGAAGCCACGATTAGG ATTTCAATAGAAATTGCCGTGAGAGGTAAACTGTTGCTGTTGTCGTGCAAGACAATTTTGATCAAAACTGTAATAACGCA CCGAAAAAAGTTGTCCATATTTCAAACAAACTTGACATTGAGTACTTGATCTCCCACGGTTGCGACCTCCTGTAAAACCT CGACCACAACCCCTAGATTGAAAGCCTCTTCCATGATTTTAATGATTAGCAAAATTAGAGGATTGTGCAGTAACATGAGC TTGTGAATTAGAAGCAGATTGTTGAGGTTGATCAGTTTGAGATAATTGAGCCCCTTAAGCAAGATTAGTAATGCTTCAAT TCTTGCCTCTTGAGCCACCACATTTTCTTTCTATTCTTCTAAATTCTTGCCTCTTGAGGGTTAGTAGTGCTTCAATTTCA CTATTATCAATTGTTAACAGCTTAAACCTACACAGAAATCAAATTGGCTGTGTCCTATAATCAGCCGGTAAGCCTTCAAG TATTATATCTATTTACTCCTTGTATGAAACTGAATCTCCTATTGCGTGAATAAAGAGTCGGGGATACTCTTGATACGAAG TAGAAATTCAGCAATTGACTTAGAATACTAAGTTTTATTCCTTATCTCTGTCTGCAACTTCCTTGCTTTGGCTTCAGTTT AAGAATGGACGTGAGAGCTGGTAAGAGTGCTGGCATCCAATTACCTTAATAAAAATTGGCCTAGTAAGAGAACATAGGTC CAAGAGAGCAATAATGCATCTTGTTGTTCCCAAGAAAGATACCCAGGATTCACTGTATTAGTGGTTGCGATCAAGTTCTG TCAGAAATGTTGAAGGAATTGAAGGATTAACTAAGGAAACATGAAGCCTATGACCATTGACCAGTAGTCACTGGCTCAAT TTGTTGTTTCTGATACTCTTATCGGATATGTGCATCATTGGTTACTTTCATTGCATTTTATTCTTTCTACCTTAATTCAT ATCCATAAAGCTCCTAGCGCTCTTTAAGCATTATCTATAAAAATACTTCATTATGTTTGAGGTTGTCATGCAAACTTCTT TTCTAAACCATACATATAACTTTATGGTGTTTCATGCTGGGGGTTATTTTCTTGTTCTTTATCAGATCTACAGTGATAAA TTCTGATCCCTCTACTCAATTTGACACCTGACCCATCATCCCTCTACTCCCTCTTAGAATAATAAATAACATTTTGAATT ATTTAAGTGAACCCAGTTTTTCTACTACCAAAAAATTGACACCTTCCTTCCATAGTTGGTATGGATTGGGGAATAAGCTA CGAAGTCAGTTTCTTTCTGCCATGCGGAAATCAGAGACTGGCCAATGTCAATACTTCTCTCAAATAATCATAAGGTCCCC TATTCTTATTAGGCCATTGGCTATACAAGTATTTGTAAGCATGGGTTGATAGCAATTATTGTTCCATAGCATAGGTGGAC ATACTTCGGTAATATTAAATAGATTCGGTTTGTTATTGGATCAAGTTGTCTCAATATGGTGTTCTTCAGCAGCCTTCGGG GCTATAAAAGATCATGTTTGACCCTTGATATCCCAAATCCAGTTTAACCCTAATTACTCCAGATGAAGATTTACCCTGGT TATTCCAAATTTAGTCTGGCTCTAGCTATCCCAGATTCTGTTTGGCGGCCCGGGCTGTTCTAGATTAGCGATGAATTAGC TGCGATTGTTACCGGTCTCCCATTGTGAATCATACCAATGGTGAATTCTCCTATCTGACTGATGAATCCTGCCATGATGA ATTCCACGGCTCTGATGTACAGCAGTCTTAGTTTCAATTTATATTTATTTTATTTTTGGGTATCCTAAATTTTCTTGTTA AGCTTCAAATGTTTTTTTTTTTTGAACTCTGTTAAGCTTCAAATGTTGTTCGTGATAGATTTGGAGAAGTTTGCTGCGTA TAATTGCTTCCTTAAATTTTCACCGATAATCATTTCACTTTGTCGATTCCTTGGTTATGCCACATTCCAACCAGCTCTTA AGGTTGATGGTCATCCCATCCTTCATGCTGAGTTCTCTTTTTAGCATTGCTCATCTCTCCAACGTTTCCCACATCCTTAA ATTGCCTTTATAGCTATATTAATTATCCTTTTTAAGAGGTTATTTGTAACAAGCTTAATGTTCAGTAATTTTTAGCATGC GGGGAAATGTTGGAATATCTAAAAAAAGAAAGATAGCGTACAAGAATTGTATATTATAGTAATTTAGAATATCTTTGGTT ACTTCTTAGGATTTGGTTTCATATTTTATTATATTTCATGTTTTGGTTCCTTAATCCTTATTTAATTAGGATTAGGAGAC TAGTATTAATATAAACTAAATAAGGATTGATTCTTAATCTTTTGTGTCATCATAAAAGCATAATCACAATTTGAAGTCTT CATTCTTTCTCTCCTCTCCCTCCTTGTCTAAAACTATATATATTACATCCCGTTCCACAGTACCTATGATATCTTTCTGG TTTTCAGTTTGATGTTCAGTCAAGCTAACATGAATGATAGTAATATTGATGATCGAGTTTATTATATCACTGCCAATAAC ATTAACCGCAGAGTTAGTAAAGATGCAGCATAGCTGCAACTGGTAGCACCACTACCTGTCATAATTGTCAAATCAAAGTG CTAATTCTAATCCTTGTATTGGGAATGCTATCTTCATTTCTCATGTACAAGTTTGCTAGTGGTTATCTCTTAGAATTTAT AAACTGAAATCAGTGTGTAGATGATACTGTTTTATGGTTATTGATGTTCAATTAGAGCATAATTTTTCTTTTGGTATCGT GACATGCTTCGTTATGCTGAACTTTCTTTGACCTAGTTGTTTTTGTTTTCAACTTTTCAAATTTGTTGAACAGATTGTTT CTTCTTGGTTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCAACACA AGTAGCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAATTCGATGAATAAAGATAGAAGGCGATCCAGTATACATGATA TCACCAGTGTGAACAATGGAGACATTTCAGCTCCTCAAGGACCAATAACTGGTCAGGCAAATGATTCTGCAGAAAATTCA TCTGGAAAATCATCCAAACAAACCCCTCCAACCCCAACTGGGGCCCCAGGTGTTGGAATATATGGTGTTCCTACCATTGG ACAACCTGTCGGAGGACCCCTTGTATCTGCAGTCGGCACCCCAGTTAATCTTGCTGGCCCGGCACACATGGCATATGGTC TTAGAGCCCCGGTTCCTGGGGCTGTGGTTCCTGGGGCACCAATGAACTTGGGTCATGTTCCATACCCAATGCCTCATACA TCTGCTCATAGGTGA
CDS sequence (LotjaGi4g1v0163000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGTGGATGAAGTAGGTAGTAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAAC TTATCCTGAGGATGATTCAGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAAACTTTAGAAGAGATTAAACATC ATTATGAGCTTTTGGTTGATGATGTTAACCAGATTGATTCTGGTTGTGTACCTGTGCCATCTTATAATTCCTTTTCCGAG GGCTCAAGAAGCCATGCTAGTGATGAAGGAGCTGGAAAGAAGGGGGGCCATCCTTGGAACTACAACAGTGAGTCTAACCA TGGAACTAAGGCTTCGAGATCTGATCAGGAGCGACGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGATTGTTTCTTC TTGGTTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCAACACAAGTA GCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAATTCGATGAATAAAGATAGAAGGCGATCCAGTATACATGATATCAC CAGTGTGAACAATGGAGACATTTCAGCTCCTCAAGGACCAATAACTGGTCAGGCAAATGATTCTGCAGAAAATTCATCTG GAAAATCATCCAAACAAACCCCTCCAACCCCAACTGGGGCCCCAGGTGTTGGAATATATGGTGTTCCTACCATTGGACAA CCTGTCGGAGGACCCCTTGTATCTGCAGTCGGCACCCCAGTTAATCTTGCTGGCCCGGCACACATGGCATATGGTCTTAG AGCCCCGGTTCCTGGGGCTGTGGTTCCTGGGGCACCAATGAACTTGGGTCATGTTCCATACCCAATGCCTCATACATCTG CTCATAGGTGA
Protein sequence (LotjaGi4g1v0163000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVDEVGSSSSEWSREQDKAFENALATYPEDDSDRWEKIAADVPGKTLEEIKHHYELLVDDVNQIDSGCVPVPSYNSFSE GSRSHASDEGAGKKGGHPWNYNSESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQV ASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQANDSAENSSGKSSKQTPPTPTGAPGVGIYGVPTIGQ PVGGPLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNLGHVPYPMPHTSAHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 8 | 63 | 56 | 9.704 | ||
| SMART | 9 | 61 | 53 | 1.8E-10 | ||
| SUPERFAMILY | 11 | 67 | 57 | 1.66E-11 | ||
| PANTHER | 11 | 295 | 285 | 4.9E-125 | – | |
| Pfam | 11 | 55 | 45 | 3.0E-7 | ||
| Gene3D | 11 | 59 | 49 | 1.2E-21 | – | |
| PANTHER | 11 | 295 | 285 | 4.9E-125 | – | |
| CDD | 12 | 59 | 48 | 4.17428E-10 | ||
| MobiDBLite | 77 | 120 | 44 | - | – | |
| ProSiteProfiles | 115 | 172 | 58 | 18.172 | ||
| SUPERFAMILY | 118 | 173 | 56 | 4.19E-17 | ||
| SMART | 120 | 170 | 51 | 7.6E-11 | ||
| TIGRFAM | 120 | 170 | 51 | 2.7E-17 | ||
| Gene3D | 122 | 174 | 53 | 1.1E-17 | – | |
| Pfam | 123 | 167 | 45 | 1.8E-11 | ||
| CDD | 123 | 168 | 46 | 1.07963E-10 | ||
| MobiDBLite | 178 | 230 | 53 | - | – | |
| MobiDBLite | 185 | 224 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0163000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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