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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0168200 |
| Transcript ID | LotjaGi4g1v0168200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-3-methyladenine glycosylase, putative; TAIR: AT1G13635.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1; TrEMBL-Plants: tr|I3S202|I3S202_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0168200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32324762..32327910) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTACATGAAACTCACATTTCAACAACCACCTTAGAAGACTTGTTCTTGCTAGCTATCCATCTATCTCATTTTAAAAG CCAACAAATTTTATGAATCCCAAACCCGTTTGACACCCATCCACCTTTCTAAAACTGCACTTTCTCTTTTCCTTCACTAT GTCTAAATCAAATGTAAGAAGACATGCTCTGGAAAAGAGCATGACTTTGAAAGACACACAGAAAATATTGAATCAAAGCT TCTTCCCTAAAAGCCTTAAGAAAGTGTACCCAGTTGGACTTCAGAAAAGCACTTCATCTTTATCTTTATCTTCATTATCA TTATCTTTATCACAAAACTCAAATGACTCTTCCTCCCAGGCTGATTCTTTGACTCCACTGGATGAAAATATTTCATTGGC ACTGCGTTTGATTTCAGTTTCGCCGCGTCAAAGAAGAGAGCCTACAGCAGCAAAAACTGCACAGCAACTCAACACTGAGC CTGGGGAATTGAAAAGGTGCAATTGGGTCACAAAGAACAGTGGTATGATCAATATCATGTTATTTAATTATTTTGGAAAT TTTGATATAGCTTTTTTTGCACTGAAACATGGATTTATCTGATTAACCGTTAGCAGAAATTTCGTGTGCTAAAATGTTCT GTATTTTTAGTTGGATAGTAGTTTCTATGCAGTTATAGAAAAATAAGAGAAATAAAAGATTCAATAACTTGAAAGGGACA GGTTGTTTTGACTTCAATGTCAATCACATTCACAGCTCGAACGTATTATCATGCCAATTAGTTTGGTTGCTATTTCTGCT TAACTTTATTTTCTATTACAAGTAATGATAATTGCAGCCCTCTGCTGTGCCCAAACACTTCACACGGTTTTATATAAGCT CACTGTTGTAAATTGCTCTCACATTCCGAGCCGGTATGGTAAAGGCGAAATGTCTCCCTAGTAGAACAGCTATAGAACTT TCAACCTAGGGGTTCAAATCGTTTTTAAGCACTACGACTAGCATGATTAAAATAAAAATAATGGCAAAAGCAAATGCCAA CCATGTCACTCTAGTTTTAAATTATATGCCACTACACTTTTTAGAAGATACTTCTAGCTATGTATCAGCAGACTTTTAGT AATATTTGAACTTAGAAATGAAAATATAAAATGTGTAATCGTATTTGGAGAAACTTACACTCGAATTTGTGATTGCTATT TGCTATGCCTTTGCATAATTTCAGGAAGTATCTTAATTAGTGTAAAACTGATCAAAAAAAAATTATGCAGATAAGGCATA CATAGAATTTCATGATGAGTGTTGGGGTGTTCCAGCTTATGATGATAAGTAAGTACTGAGGAATAATTTTCAGTATCTTA ATTTTTCTTGGTTTTTTTCAGATATAAATTGGCATAATCTGTTTAATCATGAAACAGCAAATTGTTTGAGCTGCTTGCAT TGTCTGGATTGCTCATGGACTACAATTGGACTGAAATCCTAAGAAGAAAGGAAACGCTTAGGTAACCTTGTGTGTGACAA ATTCAGAAATTCACATTCTTTGTCTAAATTAATACAGGTATGATAATGGTATTTTTTTTTGTGTGCAGAGAAGTTTTTGC TGAATTTGATCCCTACACTGTTGCCAAAATGGAGGAAAAGGAAATCATGGAGATAGCATCAAACAAAGCACTTTCTTTAG CTGAGAGCAGAGTTATGTGCATAGCAGACAATGCAAAGTGCATAATGAAGGCTAGTACATAATCAAGATTCATATTTATG TAATTTTTATTGTTCTATTTTCATGACTTGACTATGATCTTTGTCCACAGATTATTAGGGAATGTGGATCATTCAGTAGC TATATATGGGGTTTTGTAAACCACAAACCAATAATTAACAGATACAAATACCCAAGAAATGTCCCTTTGAGGAGTCCAAA AGCAGAGGCGCTTAGCAAGGACATGGTAAAGCGTGGATTTCGATTCGTGGGTCCAGTGATAGTGCACTCTTTTATGCAAG CTGCAGGGTTGACCATTGATCATCTTGTGGATTGTTATAGGCATGATGAATGTGTAAGCCTAGCAGAAAGACCTTGGAGG CACATCTAATTAACTAACACTTTGATAATTTTCAGTTGGTTTTTGTGAGCAAATTAAAGCTACTCAGTTTTCCAAACATG TCAAACGAGTAAAGACATGAGTGCTGTATAGTAGTTCCTTTGTTTCTTTTGTTTGCTTTTGGGTTTCCAGGATGTCCATC CCTATTGTACTTATTGATTCTAGTGCCACACCAATATTGAATGAAAGAGGAAAAGAAAGAAAGAAGAATAAAATAAGTGT TACCACTAGAGAGTCAAGCCCTCTGATGCTAGAATACTACTTGTTTGGTATGGGACGTATGGCAGGCCCAAATAACAAAA TGGTAATGTTGGTGTTATCTCAACTCAACTACAGTGTAGTCGTAGACTAAAATTGTCTAAAAATTTGCTCTGCTAGGGTT TCTGAGAGTTGAGTGTCGTTTTCTCACTTTGGGGGCTCCTCCCCCCTTTGGGGGCTTCTCCTCCTTTATGGAGGCTCCTT TTCCTGCTCTAGGTAGGTTGTCGTCCCACAATAGGTGGGTGTTTCTCCACATTAGGTTGATCTTTTACCTAAATAAGTGT GTCTTTTGTTCGGCCACCATGATTCTCCTCCACTGCCGCCCCTTCCTCCACCTTGGCCGCCTCTTCCATCTCATCTGTCA CCAGGAGCCCCGCTGAGTGCAGATCCAGTGTTGTGACGCTTAGGCCTCCACCTCAACACCACAGTTTCTGAACGCACCGC CGCATCCCAAGCCACCGCTGCAACCCAGATCCGCATCTTTGGGGTTTAGGGACTTTTGTACTACCCTTAGGGTTCTTTCA TCATGTTTATGCTGGTTGTTTCAGTTTATTTGCTTGAGTGTGCATGCTTGTACTTAAATCGCTTATGTTCTGCATTGCGT TATCGCTCCTTGAGACTTGTTCTCTCATGTTGTAAGTATCGTGAGGAAACCCTTTGGGTTTTGAATGAATTTGAATCAAT GACAAAAAAAAAAACTACAGTGTTGCAGTTAAAAAAAAAAAACTCAACTACAGTGTTGAGTTGGGGTCCGTTCGTCTTCA AGTTGATGGTTTGTCTGCCAGCTTTCAAC
CDS sequence (LotjaGi4g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAATCAAATGTAAGAAGACATGCTCTGGAAAAGAGCATGACTTTGAAAGACACACAGAAAATATTGAATCAAAG CTTCTTCCCTAAAAGCCTTAAGAAAGTGTACCCAGTTGGACTTCAGAAAAGCACTTCATCTTTATCTTTATCTTCATTAT CATTATCTTTATCACAAAACTCAAATGACTCTTCCTCCCAGGCTGATTCTTTGACTCCACTGGATGAAAATATTTCATTG GCACTGCGTTTGATTTCAGTTTCGCCGCGTCAAAGAAGAGAGCCTACAGCAGCAAAAACTGCACAGCAACTCAACACTGA GCCTGGGGAATTGAAAAGGTGCAATTGGGTCACAAAGAACAGTGATAAGGCATACATAGAATTTCATGATGAGTGTTGGG GTGTTCCAGCTTATGATGATAACAAATTGTTTGAGCTGCTTGCATTGTCTGGATTGCTCATGGACTACAATTGGACTGAA ATCCTAAGAAGAAAGGAAACGCTTAGAGAAGTTTTTGCTGAATTTGATCCCTACACTGTTGCCAAAATGGAGGAAAAGGA AATCATGGAGATAGCATCAAACAAAGCACTTTCTTTAGCTGAGAGCAGAGTTATGTGCATAGCAGACAATGCAAAGTGCA TAATGAAGGCTAGTACATAA
Protein sequence (LotjaGi4g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKSNVRRHALEKSMTLKDTQKILNQSFFPKSLKKVYPVGLQKSTSSLSLSSLSLSLSQNSNDSSSQADSLTPLDENISL ALRLISVSPRQRREPTAAKTAQQLNTEPGELKRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTE ILRRKETLREVFAEFDPYTVAKMEEKEIMEIASNKALSLAESRVMCIADNAKCIMKAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 1.1E-97 | – | |
| PANTHER | 1 | 217 | 217 | 1.1E-97 | – | |
| Gene3D | 111 | 219 | 109 | 3.5E-30 | – | |
| SUPERFAMILY | 112 | 217 | 106 | 4.71E-28 | ||
| Pfam | 119 | 217 | 99 | 3.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. | ||
| Molecular function | DNA-3-methyladenine glycosylase activity | Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site. |
Expression pattern of LotjaGi4g1v0168200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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