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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0186400 |
| Transcript ID | LotjaGi4g1v0186400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|A5C6L7|A5C6L7_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0186400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:41904592..41908463) extracted from Lotus japonicus Gifu genome v1.2.
CTACAAACAAGAGTGAAGAATACATTCAAGTACTTAGAAAGCGTATTAAAGATTTCCCCAACAAATCATTATTTTAAAAT AAAATAAAAAACTTTAGGTTGCCCAAACAAATGACTGCATTTTGAGTCTTTGTCTCCTTCAACCTCCCTCATATTCCCTT CACAATCTCTCTCTCCCCATTCTTCTCTGCTTCTTGTGTTTCCCTTTGCTTTCTCTCCACTCCAACTTCACCCTTCAAAA TCCACCCCAATCTCAACCTCTTTTTCCTTCTTTCTTTATTTTCCATACCACTCCCCCTAAAATAAAACATAAACAAAACA GTGTTCTTAAACCCCCAAAAAAAATTCATATCCATCCATTGTTTTCTGTTTACTTCTTCTTATAATATACAAAGCCTCTT CTTTTTTTTTTATATATTTTTTCTCTCTCTTTATTTTCTTTCTTTGATGTGTCTATGGCTGGTTTGGATTTAGGAAGCGC TTCAAGGTTTGTTCAGAGCCTCCACAGACCCGACTTGCACCTCTCAGAAGACCACCAAGACCACCGCAGTGGGGCCCTAT TCTCCAGCGAGGACGATGACCGGAGCCAAGGCTTGGAGCTAGGTTCGGCGGGACCCGGCGACGTGGTGGGCCGGCGTCCA CGTGGCAGGCCGCCAGGGTCCAAGAACAAGCCGAAGCCGCCGGTGATCATCACGAGGGAGAGCGCCAACACGCTCCGGGC CCACATCCTGGAGGTAGCCAGCGGCTCCGACGTCTTCGACTGCGTCACCGCCTACGCGCGCCGCCGCCAGCGCGGGATCT GCGTCCTGAGTGGAAGTGGAACCGTCACGAATGTTAGCCTCCGGCAGCCGGCTTCCGCCGGCGCCGTCGTGACTCTGCAC GGGAGGTTCGAGATACTGTCACTCTCCGGATCGTTCCTTCCGCCGCCTGCCCCTCCCGGGGCGACGAGTTTGACTATCTA CCTCGCCGGAGGGCAGGGGCAGGTCGTTGGAGGGAGCGTAGTGGGAGAGCTGACCGCGGCCGGACCCGTCATCGTGATTG CGGCGTCGTTCACGAACGTGGCCTACGAGAGGCTGCCGTTGGACGAGGAGGAGGAGCAGCAACAGCAGCATCAGCTTCAG ATGCAGACTCCGCCGGCTGGGTCTCAGGGTTCCGGCGGCGGTGTCAACCCTTTTCCGGACCCTTCTTCCGGTTTGCCTTT CTTCAACTTGCCGTTGAATATGCAGGGTGTTCAGTTACCGGTGGATGGTTGGGGCGGAAACGTTAACTCAGCTCCTCGTC CACCCTTTTGAGGGTTCTACAAAAACAAGTCACTCACTCACTCTCTTTGGGTTTTTTTGTGGCGTTCTTGAAGTTGAATC AATCAACCTAAATTAATATAGGTCATGTCATTTGAAGATGTTGTTGATCATCATGGACATGGAGTTGCAACTTGAAGCAA GTAGTGCTTATGATTAAGGTCAGCAAATTCATGGACTGCATATATAATTTATATTATGAATGTGCTTCTTCGTCTCCTAC TCTTTCTTTTTTGTTGTTAATGGATGATGATTTCAGTCATGTACTTGTTCTAGTTAACTATTGGCTCATTGGATTTTGAT TATTTTGGGATTTTACTTTAATTTCTTTGTCCACTATGAAACACTAAAATAATTAGTGTCTTGGTTTATTTATTTCTCCT TTCTCTAAGATGTTTGAGGATAGTACTGCTATGAGTAACGTTTCATCCACACCTCTGGTGAGAGAGATAGGAAGAAAAGA AAAAGTAAGAGAGAGAAAATATGAGATGTGATAAATGATAAGATAAGAGAAGTAGAAATAAAAAGAGGTGGAAATGAAGT GTTTAAAAAATGAGGTGTGTACGTATATATCATTGCTCGTACTACTATTGTTTTACTAGCTAGCTAGCTTTTAATGTTGG TATATATACTTGCACTTGCTACATGTTTCAAGAAGTTTGGTTGTCGTTCAACATGAAGCAATAGCAATAAATCTGAAGTT GCTACTTGATAACCAGCAACCCCTTCTTCTTCCTTTATTTCCGTGCCTTTTTAATTTCTTTTTATTGGTTTATTTTATTT ATTTTTGTTGGCTTATTTATTAATATCGTTTTGTTAACACAATTTCCTTTGCTGGTCACGAGGTTTTACAGATAAACAAA GGTCAAATGATATTTATTAGTGCTTGTGTTTGGTGAATATATATATGTTAATTGGAGTGTAAAAAGAATGCGTATAAAAC TTAGGAATCGGAATAAATAAAAGTTGATCCTTTACGGCGTTAACTTATTAGTATATATGTACAACAGGAGATATATGGGG AAATCAGCTAGTTAGGTTGTTATATAAAGCAAGTAGTTTTATTGTTTATGTGGATGATCCTCTTGCTAGTGGTGCTTGAT AATATCATATGTAAAACAAAATTGTTCTTTGAATGAATCTTTAGGGTGAAGATAAGCTTTCTGCTTCTGATATATACTAA CTACATGCATAAAATGAAAAAACTTGAATTAATAATGCTTCCTTTGTCATAATTTATATTTCGCATGGGGCAAGCAGTCA TGAATATGCTTTAAGTATAACTTACATATGCTTGTATCAATTCTCTATAGTGGTTCTGGCTGGCTGTGAAATGTTAGTCA AAATTATTGGTTTTCTTTCCAGCGTAAGCCAGCTTTTATACAACGCATAAGTTTCTATTTTCAGATCACTATGGCCTGAA TATTTGTGACATTGAAAAGCTTTAGAACCACTTATGAGTTGGAACTCAAGTTGAGTCTTCTAGTACCTTCTATTAGGGTG AAATATATGATCTGATTATGATAAAATAAATTATGATAAAATAAAGGAGGATTCATGCTTCTGCTACCTCTAATAAGGGG ATTTATACCCTAGTCTAAAACTTAATTTGGTCGTCTAATGGTGATATGTGCAAAATTCAAACCAAACACCACCAAATATC TTTCATTGATTTACAGATAGGTAGAGGCCGAGCAATTATAGGGTATTTTTTTTATCGGCGAGCAATTATAGGGTATAGTG TACAAAAATCTCATATTGACTAAAAATATGGTCAAAATTATAGTTATAAAGGATAAAGTTATGTCTAACCTAATTTGTAA GATATAATAACATTGGCTAACACTCCTTCATCCATTTTCCCAATTTAATTCAACTTTATAAGCTTGAATGGTTAGAACCA GTTGCTTTAGCTATTAACAAGCTGTAACCTCTGAAGTCAATTGATAATGTTAATTGTTTTCATATCTGGCAGCCCCTCCT TTTTGCTTTCCTCTTTTATTTTGTAATGTATTTGTATATGGGTTAGAGTACCCCAAGTACTCCTTATATATACTATTTAT ATACTATTTGGCTTATCAAAAAAGAAAAAAACATTGTGTTTTTATCACTTTCAAAAAAAAATTTGTGTTTATCCTTTTCT TTTTTTTTTGGTGCTTCGGAAAATTAAACAAGGAAGACAAAACTAGGCCACTAAGGAACATCAAAGGAGTCCTTCAACAT GATTGACTCCAAAGCTGATGGGGGCCTATCTAAATAGCTAACACCCGGATGGAGGCCATGAGCGCCCCGCTTAGCAATCC AATCTGCTGCCATATTACTGTTCCTATGACTCCAACTCAAGCTAATGTTCCAATTCCTTGACAAAATGTGCTCTTTATAA ATATTTAAAGAGTTTATTTATTTAATATATATGAAGAGAGAGATAAACAGACAATTTTAAATTAATGAAACTATACAGAC TTTACTATTAAAAGCTGATCATAATGTACCAAAAAAAAAAAAGCTGATCATAATCTGCGGATTAGAATATAAGCTAAGCG TTTTTTATGATGCGCTTCCACTTATAGGATAT
CDS sequence (LotjaGi4g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTTTGGATTTAGGAAGCGCTTCAAGGTTTGTTCAGAGCCTCCACAGACCCGACTTGCACCTCTCAGAAGACCA CCAAGACCACCGCAGTGGGGCCCTATTCTCCAGCGAGGACGATGACCGGAGCCAAGGCTTGGAGCTAGGTTCGGCGGGAC CCGGCGACGTGGTGGGCCGGCGTCCACGTGGCAGGCCGCCAGGGTCCAAGAACAAGCCGAAGCCGCCGGTGATCATCACG AGGGAGAGCGCCAACACGCTCCGGGCCCACATCCTGGAGGTAGCCAGCGGCTCCGACGTCTTCGACTGCGTCACCGCCTA CGCGCGCCGCCGCCAGCGCGGGATCTGCGTCCTGAGTGGAAGTGGAACCGTCACGAATGTTAGCCTCCGGCAGCCGGCTT CCGCCGGCGCCGTCGTGACTCTGCACGGGAGGTTCGAGATACTGTCACTCTCCGGATCGTTCCTTCCGCCGCCTGCCCCT CCCGGGGCGACGAGTTTGACTATCTACCTCGCCGGAGGGCAGGGGCAGGTCGTTGGAGGGAGCGTAGTGGGAGAGCTGAC CGCGGCCGGACCCGTCATCGTGATTGCGGCGTCGTTCACGAACGTGGCCTACGAGAGGCTGCCGTTGGACGAGGAGGAGG AGCAGCAACAGCAGCATCAGCTTCAGATGCAGACTCCGCCGGCTGGGTCTCAGGGTTCCGGCGGCGGTGTCAACCCTTTT CCGGACCCTTCTTCCGGTTTGCCTTTCTTCAACTTGCCGTTGAATATGCAGGGTGTTCAGTTACCGGTGGATGGTTGGGG CGGAAACGTTAACTCAGCTCCTCGTCCACCCTTTTGA
Protein sequence (LotjaGi4g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLDLGSASRFVQSLHRPDLHLSEDHQDHRSGALFSSEDDDRSQGLELGSAGPGDVVGRRPRGRPPGSKNKPKPPVIIT RESANTLRAHILEVASGSDVFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPASAGAVVTLHGRFEILSLSGSFLPPPAP PGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEEQQQQHQLQMQTPPAGSQGSGGGVNPF PDPSSGLPFFNLPLNMQGVQLPVDGWGGNVNSAPRPPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 271 | 271 | 7.4E-138 | – | |
| PANTHER | 1 | 271 | 271 | 7.4E-138 | ||
| PIRSF | 6 | 278 | 273 | 3.9E-104 | ||
| MobiDBLite | 20 | 78 | 59 | - | – | |
| MobiDBLite | 20 | 46 | 27 | - | – | |
| SUPERFAMILY | 84 | 215 | 132 | 3.14E-34 | – | |
| ProSiteProfiles | 84 | 221 | 138 | 39.451 | ||
| Gene3D | 87 | 220 | 134 | 1.2E-9 | – | |
| CDD | 88 | 171 | 84 | 3.88821E-21 | ||
| Pfam | 88 | 201 | 114 | 5.8E-29 | ||
| MobiDBLite | 210 | 244 | 35 | - | – | |
| MobiDBLite | 218 | 232 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi4g1v0186400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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