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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0192700 |
| Transcript ID | LotjaGi4g1v0192700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(U)-specific endoribonuclease-B-like protein; TAIR: AT4G17100.1 poly(U)-specific endoribonuclease-B protein; Swiss-Prot: sp|B1WBB4|ENDUB_XENLA Poly(U)-specific endoribonuclease-B; TrEMBL-Plants: tr|A0A072UPG4|A0A072UPG4_MEDTR Poly(U)-specific endoribonuclease-B-like protein; Found in the gene: LotjaGi4g1v0192700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44403439..44408802) extracted from Lotus japonicus Gifu genome v1.2.
ATATGTCACATTTATTCATCCAGAGAGGTGACATTCTTATCCGAAAAAAAAAAAAAAAAACATTATGAAGGATTATGTGT GACTGTGAGTAATAGGGTGTTGTTTGCATTCTTTGAGTGTGTCAGTATATTTGTGCGAAGATGCATGGACAGGGTAAAAC TGAAACAGCTTCGATATGTATTCCTTTTCAGTTGACTTACGTTAACCGTTACCAGTTGGCATATCCCATTCATGAGCATT ATCCAAAACTTTATGTAAGATCTGTCGGCAAGGCAATTGGATGTTGAATCACAAATAATTCACTCACCCGCCAATACCTA CCATTCTCTGCTTCCTTTACTCTTTCACCTTCACACTGTTTCTCTCTCTCTGAATTCCCACAAGATATTATGGAGGGTCT AATCAAGGGCTTGGCCGATGTGATTCTCGGTGCCAACGATCAAGATCGTGATCAACATCACCAATCACACGATGATGAAG AACGCTCCAGATCCTCTTGGGCTGAGGTTGTCTCCGGAGATCAAGATCAAGATCAACAGGTTCCATTTTATTTGTAAATT ATATGCATTGGATTCAGTCATTCAGATTCGGATTCCCTAGTACTAGTGTGGGAGGGAATTCAATGATATCATGTTTTCAA GTTTGATTATTTTTATTCAGGATCAGACTCAGTCTCATCAAGGTTCAGGTTCCAGATTCTCCAACAGACCCCACAGGGAG AAGGTCACTTTTTTCCATTTCTTAATGCTCTTTTTACTCTCACTTTCCACTCAATTAAACACCCTTTTAACAATAATAAT AATAACTTAATCTTGTTGGTGTGTGAACACTGAATTTCCAGGAGGAAGAGGAATCGTGGCGAGATGACAGTTACAGTCAC AAGGTGAGTGAGAATTGAGAATTGTTGTCTATTGTGGACCCTCAAGTTAGACTCCGTTTGGAAGAACTTATTTGAGTTTA TCTTATAGCTTAAGTTCTTAAGCAAGTGTTTGGAAGAGCTTATAAGCTGTTGTGAGCTTATTTTCATAAGTTATTTGTAA TAGCAAATTATGAGTACGACCTTTATACTTATTTGTAACATATTTTAAACTTATTTGAATAAATTTTCCACATTAGCTTA ATTAGCTTATGAATAAGCGTTTATGTGAACACTTGCTATAAGCGCTTAATTACTTTGTTTTACCAAATGTACCCTTAGTC CATTACTGATGAAACCGCTGCTTGCTTGCTTGCTTACTATATTGTGCTTTTTTTTTCTCCATATATAGGAAAAATATCGT CCTCAGCGGGAGGAGTGTGAATCTGAGAGTTTCAACAGTCCCAACAGACCCCCCAAGGTTCTTAGATTCAACTTAATATA AAATTGCAATTTTGACCCCTTAGAGATATAGATGCAGCTTAGCTTTAAAGTGTGTCGATAATGTGTTTTTTACTGGCCTC AGGGAATGGTCACTTAATATTTTGGAATGTAAATGTTTCTGAGACCTAATACCTAATGCTGTTCATCTAGCAGTAACTGG ATTATAGTTTGTTTGGTTTAACATTGAATGTGATTGATCATCAGGATCATTTCTCATTGCGGCAGATCACTCATAATACA CTTAACGATTTGTTGTATGTTATGAAAATATGGTTGTGCTATTGTAGTCAAATTTTGATGCTGTATTGTTTCTGCGGGAT ATAGATGAAAACTGAGATCCTATGGTCTTGCTGGAAGGTCCATTTTATATGGCTCTCATAGGCACTTACTCTGATCCAAA TCTCTCTCTCTGCATAAAACTCAAGATTGTTTTTGGAGATAAATATTGGAAGAAATAAGTATTTATTTATATGCAAGAGA AATGGTCCACTGAACTTGGTATTTGAGAGTCAAGTTTCAGCGGAGCATGTAAACATTGAAAATGTCTGAGAAAGTTTTGT TTTTAGTCAACCTCTGTCTTCCTTTAATGCAATGCAGCATAATCCAGTATGTAACGTGTAGGATTTTTCTATTTAATTTT AATTATTTTGGAAACATCAAACTTTTATTTTTCAGTTGATTGAAGATAACAACGATGGATGGCAGACTGTTGGCAAGCCT TCAAGGCAGACACACAAGGTTTATCTTTTAATTCTAATCAATGTGTCAAATAGAGAAACTTATGAAGGTGCATTTTGACT TTTGTGTTTCAATTTGAACATTTTGTATTATGTTATACTTATGTTGCTGGTATTAATCCCAAATAAAGGAGGAATGTTGT GTTTGGCTTGCGACAATGCAAAACTGGCCGTATCTTTAATATGGATCAAGTGATCCATATAGCTGAGCCGACTGTGGGAT ATGGCTTTTGTTGTTGTTGTTGTTGTTCTGTCACTGGTATATCTTCTTTGAATTTGATTATTTGTTACTTTGTTACAGAA TGTGTGGTTTAATCAGTCCTGAACTTTTTGTGCTGCATCACTATCTGATTGTGAATGATGATCTCACCAACCTGATGTAG GTTCCAAAGGAAAACTGGAACAGCTATAAACTACCTGCTGATGAGCAACAATACTCTAATGAGGTTGAAGCTGGTGCTGG TGTAGAGCCATCACAAAGTGAACTTGGTGATCTGTCACGAGCTTGCGAAAAGCTTTGGGATCTCGATTCAAATCGTTTGG TACCTGGAAAGGACTATGAAATTGACTGTGGAGAAGGGAAAAAGGCTTACCAAAAGCAAGATATGGCTCAGGGAAGCTTG TTCACTTGGGTTAGTGATGATGTCTTCAGAAAGCCTACGTTTGCTCGTTTTCTTTCACTTTTAGATAATTACAACCCACA TCAAGGATCTAAAGAAGTTGTCACATCTGAAGAGAGACAAGAGCAAGCTTCTTTCATAGAAGAAATCAGCAGGACTGCAC CAATTAAATATCTTCACAAGTTTCTTGTATCCAAGGGAATTGCATCAGGAAGCTACCAGGATTTCAAGAGAATGATGACA AGTCTGTGGTTCGACCTTTATGGCCGCGGCGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAAT CAAACAACAGGGTGAAGTTTCTGGTTTTCATAACTGGCTACAGGTGTGACCTCTTGTTTTTCTCTCTTGCCACATCTATT AACAATTCATACCAAATTGAATGTGCACATTAACTTGGATGTTGGAAATTTGGTGCTGTTTTGAAAAACTGTTGCGTTTT AATTTCATGTTATTGTACACTTATGGTTACAGTTTTAGATTATGACTTATATATATTGGATTATTGAGTGTTAATCTTAT GAATTTTTATTTCAGTTTGAGGTTAATGATGGGATTTATATATTTTCCATATCTATGCTATTTTTATGCATATGTATATG TTTAAGTATATTTTTACATTTATAGTAAAATCTTATGATCGGTTTACGATTCTACGATTTACGATTTTGCATCTCCTCTC CATCCTACCTAGAATCTCGATTTTCACACATTACTGTTTTCAACCATCATTCACATCAAAATTATAAGTCATTTTGATCT GTTTTCACAACAATGTGTGAAAATCGAGATTCTATGCATTAGAATCTGTTTCTTGCATAGAATGATGGGTTTTTTTTATC TGTTTTCACTGTCTAGTGGTATAGTCAACATAGCACACAAAAAAACTTATTTCAGACCAGCTAGTTCCTTGTTATTTTAT TTTCCCCCTTATTGCAATGCTTCTTTCCAATAATATCATATGTTGTTATTTTGAAATTCGAAGTGGTTAATCTGTTAAAT GAGTAGATGAGAGCTTGCATGGATTTAGCTTGTAAATTTTAATTTCTTTGTATCATGTAATTTTTTTACCTCACCTATTG ATATCTTGCCAGTTTTACCTTGAAGAAGCAAAGGGAAGAGTTGATTATCAAGGCTATCTCTTTCCTCGTCGGCGGGGAGA AATTGTGAGTGACTATCTGTTGAACTTGATTTTTCCTTTTCTAAGGACTATTAATCTATTATTCTTAACATAGAAATATG ATTGTGGTACACGAATATGCTCTTGATGGACATCAAAAGACGTTGATTTTTTTAGGCCTAAAGCTAGTTTAGGGATGAAG ATTGCTCTACCTTATATAAGGACTTATTTAGTCATATCTCTAGTTAATGTGAGACCTTAGATGATCCATATATTGATGGT CTCCAATAAACGAATTTATGATTGACTCTAATACTATCTTAGAATTCGAGTTAGGCCTAACTTAATCCCAAAAGTTAGCT TAGGGATGATGATTGCTCTACCTGTATACAGACTTATTTAGTCATATCTATAGTCAATGTGAGACCTTAATAGTTGAAAA TGTCTTTCTCCAACAAGTTATTTTTCCTAAAGCATTGAGAGTCATCATTGTAATTTGCAATTATAGTCTTATTTCATTAC AAATAACTCTTTTAGTTAGTACTTTTATATGTTACTGTTTGGGTAATCTTTTGTTATATAGCTTAAGTTGTAGCCACATC ATTTTTAATGTTCTCTGCCATTGTAACTTGCAGCCTGACTCTGAAACCCAGCTTCTGACAATTCAGTTTGAATGGAATGG TGTTCTGAAATCTGTATCAAGCACTTTGGTTGGAGTGAGCCCTGAATTTGAAATTGCTCTGTATACCCTATGTTTCTATG CTGGCGAGGAAGATAACCACATTCAGCTTGGTCCATATGAAATTAATGTCAAATGCTATCGTCTTGGTGATCGAATTGGA TCTGTTTTCCCCATTGCAGAGTCTTGAACTTTCAGTTGCAAGCAATATAGTATCTATTCTTAATGAAATCATTTCTTATA ATACTAGAGAACTTGTAGATCATAGCTTTCAAGGCAAAATATCAATTAGACCAACATTGAACTATACATTCGCTGTCTCT TTTGTCTTGTAGAAAACAATGTTGAACTAGTTTACTTCCATTTTGTAATTCAGAGTCTATATGCTATTATTTATTGTTGT TAAATATCTCTGATTTTTCTGAGTTGCATCATCTTAAAGTGAGATACAGCTATGTGACAATGAGAGATGCTGCTCTGGAT CATCACGAGTTCCTAACTTGGATATTCCTTGACCAAATTTTTGATTTGTGCAACAAAGGCAACCCTACCATAGTGAAACT ATCTAGGAAGGAGATATTTTGGGGAGTGTTCTAATGTTGATTTCACACCCAAGTTCATGCTAGATCCTCAAATTTTCAAA TATTATGCTGAATTGATTTCAGTTTTATCATTGGAACTTTGTACTATACATAGCCTAGTTCACCTTCTACTTAGTGGCTA AACTTATCTGCAACGCCAACACCCATCTTATCTATCTGAATAATAATAAAATCTTTCAATCTCGAGAACCACTTAGTATG TGTC
CDS sequence (LotjaGi4g1v0192700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTCTAATCAAGGGCTTGGCCGATGTGATTCTCGGTGCCAACGATCAAGATCGTGATCAACATCACCAATCACA CGATGATGAAGAACGCTCCAGATCCTCTTGGGCTGAGGTTGTCTCCGGAGATCAAGATCAAGATCAACAGGATCAGACTC AGTCTCATCAAGGTTCAGGTTCCAGATTCTCCAACAGACCCCACAGGGAGAAGGAGGAAGAGGAATCGTGGCGAGATGAC AGTTACAGTCACAAGGAAAAATATCGTCCTCAGCGGGAGGAGTGTGAATCTGAGAGTTTCAACAGTCCCAACAGACCCCC CAAGTTGATTGAAGATAACAACGATGGATGGCAGACTGTTGGCAAGCCTTCAAGGCAGACACACAAGGTTCCAAAGGAAA ACTGGAACAGCTATAAACTACCTGCTGATGAGCAACAATACTCTAATGAGGTTGAAGCTGGTGCTGGTGTAGAGCCATCA CAAAGTGAACTTGGTGATCTGTCACGAGCTTGCGAAAAGCTTTGGGATCTCGATTCAAATCGTTTGGTACCTGGAAAGGA CTATGAAATTGACTGTGGAGAAGGGAAAAAGGCTTACCAAAAGCAAGATATGGCTCAGGGAAGCTTGTTCACTTGGGTTA GTGATGATGTCTTCAGAAAGCCTACGTTTGCTCGTTTTCTTTCACTTTTAGATAATTACAACCCACATCAAGGATCTAAA GAAGTTGTCACATCTGAAGAGAGACAAGAGCAAGCTTCTTTCATAGAAGAAATCAGCAGGACTGCACCAATTAAATATCT TCACAAGTTTCTTGTATCCAAGGGAATTGCATCAGGAAGCTACCAGGATTTCAAGAGAATGATGACAAGTCTGTGGTTCG ACCTTTATGGCCGCGGCGGCACTTCTGGTTCCTCTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAACAGGGT GAAGTTTCTGGTTTTCATAACTGGCTACAGTTTTACCTTGAAGAAGCAAAGGGAAGAGTTGATTATCAAGGCTATCTCTT TCCTCGTCGGCGGGGAGAAATTCCTGACTCTGAAACCCAGCTTCTGACAATTCAGTTTGAATGGAATGGTGTTCTGAAAT CTGTATCAAGCACTTTGGTTGGAGTGAGCCCTGAATTTGAAATTGCTCTGTATACCCTATGTTTCTATGCTGGCGAGGAA GATAACCACATTCAGCTTGGTCCATATGAAATTAATGTCAAATGCTATCGTCTTGGTGATCGAATTGGATCTGTTTTCCC CATTGCAGAGTCTTGA
Protein sequence (LotjaGi4g1v0192700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLIKGLADVILGANDQDRDQHHQSHDDEERSRSSWAEVVSGDQDQDQQDQTQSHQGSGSRFSNRPHREKEEEESWRDD SYSHKEKYRPQREECESESFNSPNRPPKLIEDNNDGWQTVGKPSRQTHKVPKENWNSYKLPADEQQYSNEVEAGAGVEPS QSELGDLSRACEKLWDLDSNRLVPGKDYEIDCGEGKKAYQKQDMAQGSLFTWVSDDVFRKPTFARFLSLLDNYNPHQGSK EVVTSEERQEQASFIEEISRTAPIKYLHKFLVSKGIASGSYQDFKRMMTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQQG EVSGFHNWLQFYLEEAKGRVDYQGYLFPRRRGEIPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFYAGEE DNHIQLGPYEINVKCYRLGDRIGSVFPIAES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 135 | 135 | - | – | |
| MobiDBLite | 16 | 37 | 22 | - | – | |
| PANTHER | 28 | 430 | 403 | 7.0E-144 | – | |
| PANTHER | 28 | 430 | 403 | 7.0E-144 | ||
| MobiDBLite | 38 | 62 | 25 | - | – | |
| MobiDBLite | 63 | 99 | 37 | - | – | |
| MobiDBLite | 117 | 135 | 19 | - | – | |
| Pfam | 166 | 427 | 262 | 7.3E-101 | ||
| SUPERFAMILY | 166 | 429 | 264 | 2.55E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endoribonuclease activity | Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. |
Expression pattern of LotjaGi4g1v0192700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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