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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0195800 |
| Transcript ID | LotjaGi4g1v0195800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT4G17040.1 CLP protease R subunit 4; Swiss-Prot: sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic; TrEMBL-Plants: tr|V7CEM3|V7CEM3_PHAVU ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi4g1v0195800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45033426..45040857) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAGCCCAACCCACGAACACTGATCTAAAACGAAAGAGTCATCATAGCTTTCTTCTTGTATCTTCTCCTCCACCACC ATCAACAAGACGAGTCTGTTCTGTTGAGCCATGGAGGTTGCAACCGCTGCTTCAACTACCTTCGCTCTGAACAAGCCTAT GCTAGCGTTGCCGTCTTCCTCACGAGCCATATCAACACCTACCCGAGCCATTAAATCCTCAGCCTCCGTCAGGACCACTC TCGCCACCGACTTCGTCGTTCATTCCGCTCCAATTAGCAGCTCCTCTTCCCTTTTCTCCGGCCACAAGCTCCGACCTTCA TGCCTCAATCCGGCGTCGTTTCGTGGTTCTGGTAAAAGAGGCGTTGTCACCATGGTACTATTCTTCAACTCTTCTCAACA TTCACGTTTCTATTGAGTGGTTTGAATTGGATAACAGATGAGACACTGTAAAAGGGTTATGCTTTAGGTTAGGTTTAGGG ATTGTTGTATGAAAAGATGAAATGGTCGAAATTTGTGAACTTTGAAGCATATACAATTTGAGCTTGAGTTGGGTATGGAG TTGTGGAATTTGACCCATAGTGTGATTGGATAAGAATTGGGTAGTTTTATTGTGATGGATACTATAAGGTACAAGGAAGA AGACACGTTTTAGAACAGAGTTCTGTAGGCAGAAAATAAGGGATTGGAATTTGGAAATGTATCAGTGGGTAATTGAGGTC AATTGTCTTAACAAATAAGGCACTTTTTTAACTGTCATTGACAAGATGTTAGATGCATGCCTTGCCTGAACTATAAGGTG CCAACTGCCAAGTGGCACTGGCCTCTTATGCTGCCTTGCCATGACAGCTTCGGAGCCTTTTGGTAGCAAGTGAATAAGCT GATTATAAGCTATATAAGATCTTATGCAGATGAATATTCACTTTAATTTTACTTTAATGATGCAATTTAGAGGTTATTTT CCTTATCCATGTATATGTACATGTTTAAGTATAATTATGCATTTTTGGTTGGATCTTATGATCCGATGTACGGCAATCTT TCACCCCCTCTGGATCCTAAGTAAGATCTTGAACTTGGCAACATTGGGGAGAGTTTTTTTTTATGGATTCTCTATGAGTC AACAACACACAAAGTTTCTTCAGATTCTCCTCAGTAGATATGCAGAGAAGACGTGGAGCTCATCATGTATTAGTTATTTA TTTATTTGTTTGTTTGTTTCTATGTTCTGTGTATGTTTAGAAAACAAATCCCATGTTTCTTATTTGTTTTTCTTCTTGTT TTGAAAATAGACTCATGCATGTAGATCAATATTGTTGATCATAGAGAGGACTTATTTACTCATGGATGTGCGATGTCTCA AACAAACAGACTCTACGTAGTTTACATAATTCCTTAATGTAATGTTCAGGCATGATTCATATATTATGAAAATAAGTGGG ATAACTTGTATGTACAGTATTTAATGGCACATGCGGACGTGATGTTGCTACCAGTATAATCTATTCAGGTTTGGTGCTCA TTTTTTCCCCTTTATCCTTGGATAGGTAATTCCTTTTTCAAGAGGAAGTGCATGGGAGCAGCCTCCACCGGACTTGGCTT CTTACTTGTACAAAAATCGAATTGTTTACTTGGGCATGTCTCTTGTTCCATCTGTCACAGAGTTGATACTAGCTGAGTTT CTCTACCTTCAATACGAGGATGATCAAAAACCTATTTACCTATACATTAACTCCACTGGGACAACTAAAGTAAGTAATTT ATTTATTTATACAACCTAGGATGTTGTCTTTTCCTTGAGAAATAATCTTGTCCACATCTTGATGTATGCTGATGTATTTG TTTCTTTAAAGCATTTGTTTTATTGCTTGATGCTGAACAAGAACATGTGGTAAGAGGGAACAAGAGGGTGGGGCACTAGG GAGTGTGTGGATCAGAGGAGAGATTTCTGAATTAGATGTGACAGTTCCAATGTCACCTCTTAATTAGAAGTAAAATTTGT TTTGAAGTATGAATGCAAATTTTTGGCATTAATAAGAATAATTTTTTAATATTATTCCCTATTGCTGTGTACCTTGATCA AAATTTTGCTTGCATCTTTTCAACTTAGACATGCTTATGTCCTACTGTTATTCCCTACTGTTAATCTTAAATGTATATTC ATATGAATTTTGGTAAGCACAATTTTGGTAGCAGTTGCATGTAATTGTGAATTGGGTATAGACATATGGGCTAGCAGTTA TTGGAAACGAGTACACTGTCTCGAAATCAAATTGTGTACAGAAAATGCAACTGTTTAGCTCAGTCCAACCTGACCTAAGT ACTATCTTGTGCAAGCATTTCTCTTGAGGTGAGAGAGAAGTGCGAGTGCAGTCTTGTTAGATAAATCCTAGCTAAAGTCT GTGGATCAACCAGCCTCGCTTTTTATGGCTACATTAGCTTATGGAGCTTAGATGAGAGCCCAAAATAATGGAGCTAGGAT TTTGGGTTAAAGGTAGACTAATATTGAATAACTTGCTTGATAGCCAATGATATATTGAAACTAACATATTGACAACTGCA CGCGAATCTGATTTTTGTTTAGAAACTAGATAAAGAAGGATGAAATTTGAAATTTCCAGGAACTGCCACTAAATATACTA TTTTCTAGGTTTAAGGAACTCCCTACCACTAACCAATATTTTTTCGGCTTAAGATTTTTACACCATTGAGCTGTGGTGCT TTCATTTCTGGCTACTGCAATGTGAACCATGGCCCCTTTTCTTTGCCAAGCAGAAAGGAATAAATAATTCCAATTGAATG CTAGAATAATGGTGCTCTGGTGTCCATGAAAATATCGATGGGTTTAATACAATCTTGTTTCCTTCTTTCAGGGAGGTGAG AAGTTGGGTTATGAGACTGAAGCATTTGCAATTTATGATGTCATGAGGTGATTATCTCTATGTTTTCTGTGATCATGTAA TCTATTCTTTTTGTCATATTTATGTTGAGTCATAAAGCATATACATTAGTGCATAGGTGTCATTGAAAAATGTTCTATAC GGTTTTAGTTTATTTTCTTTGTTTCACCTTGTATCACATGTGTGGGTTGTAAGGTGTAGAAGATCTTGTGTTGCCAATGC TTTCATAGGCACAGGTACACAGCTGCTATTTTAATAGTGTGTGGGACCCAACATGAGTCCCTTTGAACGGAAGTAATCTG AGTGGCTGTACCTATACTATGCACATCCTACTGGAGTAATTTTCATCAGCAGTGATTATTTAGCTGATTTCAATATCTAT GGCTAGTCTTTAAGTGGGCATGATGTCAAATATTATTGATGGAATAACTATTTAGTCTTCCCTGCATAACCGCATAATTA GGAGACATATTGTGTCTTTAATTGTATAATTTGTTCCCAACTTACCGAAGTTCCTGTAGAAAGTTTCTTCTTATAAACTT AGCTAAGTTTTTCTGCTACAGGTATGTCAAGCCTCCTATTTTCACTCTCTGTGTTGGTAATGCTTGGGGAGAGGCAGCCT TACTTTTGGCTTCTGGTGCAAAGGGTAATCGTTCGGCTTTGCCATCATCGACAATAATGATGAGACAGGTTTGTTATCAA ACCATTCTTTCCTGTGCTCAGTTTGATGTATGCCTTGGGTGTGGGGGGGGGGGGTCTTTTATCCAAACATCTTAAACACA TTATCATTCTCAATTTTGCAGCCAATTGCAAGGTTTCAAGGTCAAGCGACAGATGTTAATCTTGCAAGGAGAGAAGTCAA TAATGTGAAGACAGAATTGGTTAGAACAATAATTATCTAGTTTACTTTGATCTATATTATGTAGTTAAGGTCCTGTTGCA AATGATCATTGTTATCTGTAAAGCTATATGAACCTATGCATTCTTTTTGTTTTAGTCCCATCAAGATATCTAACTCAGTT TGTAGAGCTATGGCCAAATCTTTGTTTGCCTTCAAAGGTTTCAAGTTCCAATCTCAAAGATTAAGATTGTGAATTATGAC TTGTTTCAGAAAATATACATATTTGTGCTTCTCCATGGACTTCTAAATGTTTTTGATTTGAAGTTTGGACTTGAGTGTTG GTTTCAATGATCTTCTTTAAAAAGATTGATTAAAGGTTATTTTCATAACTCACATACACCCTTTAACTTCTTTCAAGGTT AAATTGTATGCAAAGCATATTGAAAAATCACCTGAGCAGATTGAAGCTGATATTCAGCGGCCGAAGTATTTTAGCCCTAG TGAAGCTGTTGAGTATGGAATCATAGATAAGGTAATTGCCATATATAGGGTGGACTTCTTATGGATTTTTTTATTTTCCT TGAAACTCAAATTTACTGCCCTTTTCAGGTATTATACAATGAGCGAGGCACTGCAGATCATGGAGTTGTTTCTGACCTGA AAAGGGCACAACTTATTTAACCATCGGGAATTTCGCTCACTATTCTCTTGGAGTTTTCAGGTAAAATACATCTGCAGTAA TAATCATATTAGACACTTAATGCAACTTCAGGATTGAATAAATTTATCATATTAGACACTTAATGCAACTTCAGGATTGA ATAAATTTATCTCAGGATAACAGTAACTTCCTCTGTTAACTAACACATTTTTAAAATCTTGGGGTTCTTCATTATTACTT TGCCAATCTGTTTGTGGTGCCTAGGAGCTTGAGTGCATGTGAAACTAGGATTGGTTAATTAGGTGATCACCTGATTTCAA AAGTTTGCTGTTTAAACTTGCTTTTATCTTTTGGTATTTGCAATTATTGAATGGGTAATTGCCTATCTGTGGGATTACCA AAAGACCGGATCAGTACTGTCACATAGTTATACCCAAGATCTAGAATATGGCGTCCAAGACCAACATTGGTAATAACTGA GTATCATAAACTAACACCTTGATACTATATTTACACACAAGTAGGGTGAGATCATCACATCTATAAAACAACCAAAAAGA CGGGGTCAAATAGAAGGAATGTACTCATAGAAAGGTTCCATCGTCCAAAAAGAACATCTAAGTTAGATTCATGCTAGTCG TCTCCAGAAGCTAGTCTACTACTGAGGTGGTAGGGGTAAAGTATGAAACAATAGCAACGCAGAGGAGTGGGATGATAGTT TACAACCAAATTACACCTTTGAATGAACAAAGTCTACTCTACCACACAATCATATAGTTACTATTGAAACTAGTATTGAT CACTAGAAGTATTAAATCAAACCCATAAGTTAAATTCTATCACACTCATTTATTTACAAATACACTAGGGCTCAACACTA TTCTTAGTTTCTTACTCCCTACGGAGGCACTCATATATTGATTCTTAATTCGGATGGTGTTACCTCTCTCCTTACCCCAA CCATTCAAGGTCATTTATCAGTTTATCTATGAAATATAATATTAGGGTGTTAGCTTATGATAAGGTCTCAGTTGTTACTA ACGCTGGTTTTGGATTCATTAACCTGGATACTTGTGACCGTACTGATGCGGTCTTTATGTATATAACATATGCAGTATAT GTATATGGCAATCCCACTTATCTTCAAGTTTTAAATTTTTTTGAGCTTTATAAATTTATATTAAAATATCCCAATTTCGG GCGTGGGGATGTCATCACTTTGGTCGTTTAATACCACAAAATGTATTGTTTTGTTCTTGTCGGAAATGAGAGAAGTTTTT CCTAAAAAACACAGCTTTAAACTCTGTAAAAATATACAAAATACATTCACAAGTTGAAACAGGAAGTAATAATACCAACT GCATAAAGTCTAAAAACACAAATGGGAGGCTTGCTCTAGCATAAGTGATAGAAATCTTGATCCACATGAATCCTTGGTTG GGGAACTCACTAACAGCATGATCCAGATTCCAGTTACTGGTATTTTTCTATTCCTCATCTATCTTACGAGTTGGAAAGTT GAATGCCGTCACACCTTACTATGTAATTGGTTACATACAAAAAATAAAACACAGAAGGAATGGGTTGTAAAACTACAAAT TGCTCCAAATGAGTAGAGCCTTCTTAAACAGACACAAAATATTTCAAAAATGCATAGTTGATCAACAAGAATACAGCTTG TATGTATCCATGAAATCATAATTAGCAATTTCCAGTAATAAACACATCAGACATACTATTTACACTTAAGGGTCCGTACT GCTCTCCATGGAGGCATTCCAATCTCAAAATCCGAGGTGGGAGCAAGTTTTTCCATACTCTGGTAGATATCTGTCTATTC TCAAGACTCTGCTACCGCAACTTTCTTATGATTTGGAACACCCTCAGCACAAGTTTCTCACACTTATGGTCTAAAAAGTG AATTTCTACTCAGCGACATCCACAAGCTCTGTAGTTTCTGTTTTTTTTCTATTCAACTAATAAGTGCAAGCATTCGTAGG TTCCCGATTAAAACGGATTGGTGTTATTTTCATGGCCATATGACTCATGCAATTTTTTTCACGTACAATGCTAAGTTGCT CTGGGCTGTTTGGTTTACTGGTTTACATCTTGCATTTGCTTTGCAGATATTTCAGACATGTCTCTTTGTTTACATCCGTT ATAGTAATTGTTACTTTTCACTTTTAACAAAATAGACCTCTCTGTATGTGTGTGTGTTGTGTGTTGTGTGTTGTGTGTTT TGTGTGTGTGTTTGCGAGTGTGCCCGTGTTGTTGATGGAATTTGTTCCTGATCATGATTGCAGAAAATTGCGTGCAAACG TAGTTTAGATCAAGCCAAGATGAAGGATCTTGAAGATCAGCAATCAAACTGGAAATCGGTGCAGCAACTAATAGTACATT AGAATTTGAGTGTCAATACCATAGATTCATTACATTGCCCTCCCTAACAATAGGCAGTAGTATCTACTCCTACGCGTCCT GTAATATGCTGTGTACATGATTGTATTCTGCTTCATTCAAATTTAGTCACTATTAATTGCTGTCTCAGTATAAGAACGAA ACTCAATTACCATTGATGGCAATGTTCAGCCAAAGTTGAGAAACATGCTTTTACAAATTTCAAACATCCAAGAAGTGTTG TGAAATGAAATGAGTATAATATTCAAATACATGCACTATCACGTTCTTAATTTGAAAATAAAATGATCTTAGTGGAGTAT TTTTGGTTTATATATCAATATTATAATTATTAGCTTTGAAGTTTTAAGCACTATCTTTGCTACTGTTCGCATGAACAGCT GCATGTTCAAGACTCTCTTGGAGCTCCATGCAATTCGAAGAAGGCACCAAATGGACGGCTTGGCTTAAGAATCACCTACT CCAATACATTTCAAAGTTCAAACTCATTGGATGAATCCTTTCCTATGGATTCATCACTTGCCCCTTGTATTCCACTATCC CAATTCCCACACAACAAATCCTCTAACTAATACAATAATAAAAGTAAACACACTGTACACGCAATTTGTATG
CDS sequence (LotjaGi4g1v0195800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGCAACCGCTGCTTCAACTACCTTCGCTCTGAACAAGCCTATGCTAGCGTTGCCGTCTTCCTCACGAGCCAT ATCAACACCTACCCGAGCCATTAAATCCTCAGCCTCCGTCAGGACCACTCTCGCCACCGACTTCGTCGTTCATTCCGCTC CAATTAGCAGCTCCTCTTCCCTTTTCTCCGGCCACAAGCTCCGACCTTCATGCCTCAATCCGGCGTCGTTTCGTGGTTCT GGTAAAAGAGGCGTTGTCACCATGGTAATTCCTTTTTCAAGAGGAAGTGCATGGGAGCAGCCTCCACCGGACTTGGCTTC TTACTTGTACAAAAATCGAATTGTTTACTTGGGCATGTCTCTTGTTCCATCTGTCACAGAGTTGATACTAGCTGAGTTTC TCTACCTTCAATACGAGGATGATCAAAAACCTATTTACCTATACATTAACTCCACTGGGACAACTAAAGGAGGTGAGAAG TTGGGTTATGAGACTGAAGCATTTGCAATTTATGATGTCATGAGGTATGTCAAGCCTCCTATTTTCACTCTCTGTGTTGG TAATGCTTGGGGAGAGGCAGCCTTACTTTTGGCTTCTGGTGCAAAGGGTAATCGTTCGGCTTTGCCATCATCGACAATAA TGATGAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCGACAGATGTTAATCTTGCAAGGAGAGAAGTCAATAATGTGAAG ACAGAATTGGTTAAATTGTATGCAAAGCATATTGAAAAATCACCTGAGCAGATTGAAGCTGATATTCAGCGGCCGAAGTA TTTTAGCCCTAGTGAAGCTGTTGAGTATGGAATCATAGATAAGGTATTATACAATGAGCGAGGCACTGCAGATCATGGAG TTGTTTCTGACCTGAAAAGGGCACAACTTATTTAA
Protein sequence (LotjaGi4g1v0195800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVATAASTTFALNKPMLALPSSSRAISTPTRAIKSSASVRTTLATDFVVHSAPISSSSSLFSGHKLRPSCLNPASFRGS GKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDQKPIYLYINSTGTTKGGEK LGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLASGAKGNRSALPSSTIMMRQPIARFQGQATDVNLARREVNNVK TELVKLYAKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNERGTADHGVVSDLKRAQLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 26 | 13 | - | – | |
| Phobius | 27 | 304 | 278 | - | – | |
| PANTHER | 55 | 303 | 249 | 3.0E-137 | – | |
| PANTHER | 55 | 303 | 249 | 3.0E-137 | ||
| Gene3D | 82 | 290 | 209 | 7.5E-58 | – | |
| SUPERFAMILY | 99 | 286 | 188 | 8.14E-50 | ||
| Pfam | 104 | 284 | 181 | 4.1E-50 | ||
| PRINTS | 104 | 119 | 16 | 1.2E-24 | ||
| CDD | 104 | 282 | 179 | 3.67058E-87 | ||
| PRINTS | 144 | 164 | 21 | 1.2E-24 | ||
| PRINTS | 183 | 200 | 18 | 1.2E-24 | ||
| PRINTS | 204 | 223 | 20 | 1.2E-24 | ||
| Coils | 229 | 249 | 21 | - | – | |
| PRINTS | 261 | 280 | 20 | 1.2E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0195800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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