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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197000 |
| Transcript ID | LotjaGi4g1v0197000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate transporter; TAIR: AT4G17550.1 Major facilitator superfamily protein; Swiss-Prot: sp|O23596|GLPT4_ARATH Putative glycerol-3-phosphate transporter 4; TrEMBL-Plants: tr|I1K0V0|I1K0V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45293452..45296702) extracted from Lotus japonicus Gifu genome v1.2.
CACGTTTCCCTCCTCCCTCTCTGTTTCTCTCTCCCGCCATTCTCGCTCTCCCTCTTATCTCTCTCTCTCTTCTCTCCCTC TCTCTCTCAACGATGTCACGGCAGCAACAACAATGCGATTCACGGCGGGGGAAAATCCCGCCGGGAATTCTTCTAATCCG CGGCAAGGATTGGAACCTCCACACCTACCGCTACATGGTTCTGTTCATCACATTCATCGCCTACGTTTGCTACCACGCTT CACGAAAAGGCACCGGCATAGTCAAAAGCGTGCTCTGCCCTGTCCCAAACAGAACCAAAATCCACGGTTGGAGCCCCTTC AATGGCCCAGAAGGAACTTCCAAGTTGGGAGAAATCGATGTGGCGTTCTTGGCTTGTTACTCTCTAGGGATGTATGTTGC TGGGCACTTAGGGGATACCCTGGATTTGCGATTGTTCCTCACGGTGGGGATGATGGGGAGTGGAGTTTTTGTGGGGCTTT TTGGGATGGGGTATTTCTGGAATGTTCATGAGTTTTGGTTTTTTCTGGTGATGCAGATGGTGGCGGGGTTGTTTCAGGCG ACGGGGTGGCCGTCGGTGGTGGCGGTGATTGGGAACTGGTTTGGGAAGAGGAAGAGGGGGCTGATAATGGGGGTTTGGAA TGCGCATACTTCGGTTGGGAATATTAGTGGGTCGCTTCTTGCGGCGAGTGTTTTGGATTATGGGTGGGGGTGGTGTTTTG TTGTGCTTGGTGGGGTGATGGTGTTTGGAGGGGTTGTTGTTTATTTGTTTCTGGCTGCGTATCCGGAGGATGTCGGGTTT TCGTCGATTAATCAGGGGGATGAAGAGGCTCAAGGAGGTAAAGATGGTGGTGGTGGGGGTGAAGGGGAGAGTGGTGGTGT TTCCAGGAAGAGCATAGGGCTTGTTGAAGCTTGCATGATACCAGGAGTGATCACTTTTGCTTTGTGCCTGTTCTTTGCCA AGCTTGTTGCCTACACTTTTCTCTATTGGTTGCCATTTTACTTGACTCAGACAGGTCAGCTGATAGGAATTCTAAATTGT TATGTCATAAGTCATAACTCATAAGTAATATATAAACCATATATAAAATGATTTGTAGACATCCGCATAGTGCAGACAAA CGCTCGAAAAAGAGGAAGAAATGAGAGAAATAATAAAAGTGATATACAATAGAAAAAAGAGATACGGAGATAAACAAATT GTCTATTGAATGTTTGCACTATTTGTATGTTGGGGGTGAATGAATCAAAATCCCGTCTACAATAATTCTTTTCAACAAAA CTATTTGTCAGTAGATGTGATTCATGTAGGTTCTACCTAATAAGTATCAGGACCCAGATATTTTAGTGAGACAAAAAGTG TACTTGCATTCCTCTTCACAATATGTGATTTATCCCTTTTAGAGACCTTATCATGTAGGACTTAAGAGCTTTTCATGTGT GGTTGCTTTTGCAAGATGGCTCTAAAGTGAATTCTTGGTCTTTTACAAATCTCAATCTAAGTTATGGATAATCTACATAT GTAGTTTGTTAAAAAAAGTGCTTGCTGTGCATGTGGTTTTGAATTACTAATACATGTGGTGTTGAATTACTAATACATGT GGTTTTGAATTACTTGTTTCCTCTGCTTTCTGACAGATGAAAATATAACAGCAGAATTGACTAGCATGAGACCCTTAAAA CATGTGTAGTTTGGTTTATTTCATTGGTTAAAAAACCTATCAAATTCACTCTTCTGGTTTTTTTCCGTATAAACTGCACA AACGTTGCATTTGATAATGAGGCCAATCCCTTGAAATCCAAATTGCATTGTATCTTTATCTGTCTTATAAATTGTCATTT TCCTCTTGCAGAAATTGGTGGGAAGTACATCTCTGTTAAATCTGCTGGAAACCTTTCAACCATGTTCGATGTGGGGGGCA TTGTTGGGGGCATTCTTGCAGGCCACATATCTGATAGGCTCAATGCTCGCGCTATAACCGCAGCCAGCTTCTTGTTTGCA GCGATTCCTTCCATGTTTTTATACAGATCATATGGAAGTGTTTCCATGAATGCCAATATTGCACTCATGATGGTGACTGG ATTATTAGTAAATGGACCCTATGCACTCATCACTACAGCTGTCTCTGCGGATTTGGGTACGCACAGTTCTCTTAAAGGGA ATTCTCGTGCTCTGGCTACAGTTACTGCTATTATAGATGGTACCGGATCAGTTGGTGCAGCTCTTGGCCCTCTTCTTACT GGGTTTATCTCAACAAAGGGGTGGAATGGAGTTTTCACTATGCTAATCGTTGGGGCTTTTATTGCTGGGCTTCTTTTGAC GCCTTTGATCATAGCTGAAATCACAGAAAGAACGGGCAAACCTAGCGAACAGCAAAATCTTGAAGGTAAAACATTCAAAG TATTAAACCAATGGGGACGAGTCATATAATTAATTTCAATCTGCTGCTTCTCCTTTCTTTTGTGAATCTAGCACCTTGCT CATGACAATATCTATTTTATGGATAAAGTAGTTACTGATGAGTTAAAGTCTAACATAACCCAGTGATATGACGAAAATAG TCCTAACTCCTAATATATGATTGCGCAGTTCTCATTCCTGGGCTAGGTTTTTGAGTTAGTGTTAGACCTAACACAAATTT TAACATCATGAAATTCTAAGAAGAAGGAATCAAATCATATGCATGTTTTTCCTCCACAATGTGTGTTCCTTCATTTTCTG TCAACAAAATGTAGTAGAATTAGCATTGTCTTGTTATAATTATCTTGAACTTTGAACTTTGAATTTCTGTCTAAATCATC CCTTGTGATGTTTTTGACATATTGGTGATCTTTTTGCAGCCTCTGCATCTCAACCACTTCTGGAGGAAGAAAGGTGACAC TTATCGAGAACCTCATGAATCCTCAAATATGATGCTTAGTACTTAGGTTGTAATATGAGAAGGTTGTAATATATTGTTAA TGGCTCTTACAGTAGCTTGCAGCAGCCACTTCATTGCTCATTTTCTGTGACGATGATATGTGCCTAATTATATGTAAATG AACATGTAGATTAGATGTATTTAGGCTTAAATGCATTTGTTGCCCCTGATGTATAGCCAATATGCAAAAGACAACCCAAG TCTATTTTTGTCGACGTTTGTACCCTCAATATTTTGAGAAAGTATAACGAATGCCCCTCCGTCAGATTTGACGTTAAAAA ACTAACGGAGGGGCTGACGTGGCTTTTCTATTTTATTTTTCTTTTATTTCT
CDS sequence (LotjaGi4g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGGCAGCAACAACAATGCGATTCACGGCGGGGGAAAATCCCGCCGGGAATTCTTCTAATCCGCGGCAAGGATTG GAACCTCCACACCTACCGCTACATGGTTCTGTTCATCACATTCATCGCCTACGTTTGCTACCACGCTTCACGAAAAGGCA CCGGCATAGTCAAAAGCGTGCTCTGCCCTGTCCCAAACAGAACCAAAATCCACGGTTGGAGCCCCTTCAATGGCCCAGAA GGAACTTCCAAGTTGGGAGAAATCGATGTGGCGTTCTTGGCTTGTTACTCTCTAGGGATGTATGTTGCTGGGCACTTAGG GGATACCCTGGATTTGCGATTGTTCCTCACGGTGGGGATGATGGGGAGTGGAGTTTTTGTGGGGCTTTTTGGGATGGGGT ATTTCTGGAATGTTCATGAGTTTTGGTTTTTTCTGGTGATGCAGATGGTGGCGGGGTTGTTTCAGGCGACGGGGTGGCCG TCGGTGGTGGCGGTGATTGGGAACTGGTTTGGGAAGAGGAAGAGGGGGCTGATAATGGGGGTTTGGAATGCGCATACTTC GGTTGGGAATATTAGTGGGTCGCTTCTTGCGGCGAGTGTTTTGGATTATGGGTGGGGGTGGTGTTTTGTTGTGCTTGGTG GGGTGATGGTGTTTGGAGGGGTTGTTGTTTATTTGTTTCTGGCTGCGTATCCGGAGGATGTCGGGTTTTCGTCGATTAAT CAGGGGGATGAAGAGGCTCAAGGAGGTAAAGATGGTGGTGGTGGGGGTGAAGGGGAGAGTGGTGGTGTTTCCAGGAAGAG CATAGGGCTTGTTGAAGCTTGCATGATACCAGGAGTGATCACTTTTGCTTTGTGCCTGTTCTTTGCCAAGCTTGTTGCCT ACACTTTTCTCTATTGGTTGCCATTTTACTTGACTCAGACAGAAATTGGTGGGAAGTACATCTCTGTTAAATCTGCTGGA AACCTTTCAACCATGTTCGATGTGGGGGGCATTGTTGGGGGCATTCTTGCAGGCCACATATCTGATAGGCTCAATGCTCG CGCTATAACCGCAGCCAGCTTCTTGTTTGCAGCGATTCCTTCCATGTTTTTATACAGATCATATGGAAGTGTTTCCATGA ATGCCAATATTGCACTCATGATGGTGACTGGATTATTAGTAAATGGACCCTATGCACTCATCACTACAGCTGTCTCTGCG GATTTGGGTACGCACAGTTCTCTTAAAGGGAATTCTCGTGCTCTGGCTACAGTTACTGCTATTATAGATGGTACCGGATC AGTTGGTGCAGCTCTTGGCCCTCTTCTTACTGGGTTTATCTCAACAAAGGGGTGGAATGGAGTTTTCACTATGCTAATCG TTGGGGCTTTTATTGCTGGGCTTCTTTTGACGCCTTTGATCATAGCTGAAATCACAGAAAGAACGGGCAAACCTAGCGAA CAGCAAAATCTTGAAGCCTCTGCATCTCAACCACTTCTGGAGGAAGAAAGGTGA
Protein sequence (LotjaGi4g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRQQQQCDSRRGKIPPGILLIRGKDWNLHTYRYMVLFITFIAYVCYHASRKGTGIVKSVLCPVPNRTKIHGWSPFNGPE GTSKLGEIDVAFLACYSLGMYVAGHLGDTLDLRLFLTVGMMGSGVFVGLFGMGYFWNVHEFWFFLVMQMVAGLFQATGWP SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWCFVVLGGVMVFGGVVVYLFLAAYPEDVGFSSIN QGDEEAQGGKDGGGGGEGESGGVSRKSIGLVEACMIPGVITFALCLFFAKLVAYTFLYWLPFYLTQTEIGGKYISVKSAG NLSTMFDVGGIVGGILAGHISDRLNARAITAASFLFAAIPSMFLYRSYGSVSMNANIALMMVTGLLVNGPYALITTAVSA DLGTHSSLKGNSRALATVTAIIDGTGSVGAALGPLLTGFISTKGWNGVFTMLIVGAFIAGLLLTPLIIAEITERTGKPSE QQNLEASASQPLLEEER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 14 | 65 | 52 | 1.3E-213 | – | |
| PANTHER | 14 | 65 | 52 | 1.3E-213 | – | |
| PIRSF | 21 | 484 | 464 | 5.0E-126 | ||
| Gene3D | 26 | 244 | 219 | 4.9E-40 | – | |
| SUPERFAMILY | 29 | 467 | 439 | 8.37E-58 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 31 | 49 | 19 | - | – | |
| CDD | 33 | 470 | 438 | 0.0 | – | |
| ProSiteProfiles | 39 | 472 | 434 | 22.012 | ||
| Pfam | 42 | 400 | 359 | 6.7E-34 | ||
| Phobius | 50 | 113 | 64 | - | – | |
| PANTHER | 68 | 481 | 414 | 1.3E-213 | – | |
| PANTHER | 68 | 481 | 414 | 1.3E-213 | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 114 | 136 | 23 | - | – | |
| Phobius | 137 | 141 | 5 | - | – | |
| Phobius | 142 | 170 | 29 | - | – | |
| TMHMM | 151 | 170 | 20 | - | – | |
| Phobius | 171 | 176 | 6 | - | – | |
| Phobius | 177 | 198 | 22 | - | – | |
| Phobius | 199 | 203 | 5 | - | – | |
| Phobius | 204 | 227 | 24 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 228 | 273 | 46 | - | – | |
| Gene3D | 272 | 476 | 205 | 6.9E-35 | – | |
| Phobius | 274 | 299 | 26 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 300 | 318 | 19 | - | – | |
| TMHMM | 318 | 340 | 23 | - | – | |
| Phobius | 319 | 337 | 19 | - | – | |
| Phobius | 338 | 343 | 6 | - | – | |
| Phobius | 344 | 365 | 22 | - | – | |
| TMHMM | 350 | 369 | 20 | - | – | |
| Phobius | 366 | 376 | 11 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 377 | 402 | 26 | - | – | |
| Phobius | 403 | 413 | 11 | - | – | |
| Phobius | 414 | 436 | 23 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 437 | 447 | 11 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 448 | 469 | 22 | - | – | |
| Phobius | 470 | 497 | 28 | - | – | |
| MobiDBLite | 478 | 497 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0197000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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