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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197500 |
| Transcript ID | LotjaGi4g1v0197500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial; TrEMBL-Plants: tr|A0A151S9R5|A0A151S9R5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0197500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45400070..45401977) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACCCTTTATCAACCTCGTACTTTCTTACACTAACCAAACTTCAAACACTCACCCAAAACCACCAAATCTATGTTCC CTTACATTCCTATCATCATGAAACACTCACCCAAAACAATGTCGTCGCTTCGAACAAGCTCATCGCCAGCTACGCTCGAT CCGGCGACACGGATTCCGCTGTCCGCGTCTTTGAGAGCATGAAAGTGAAGTCCACTGTTACCTGGAACTCCATCCTCTCA GCCTTTGCAAAGAAACATGGCAACTTCGAGCAAGCCCGCCAACTGTTTGAGAAAATTCCTGAACCAAACACTGTTTCATA TAACATTATGTTGGCTTGTCATTTGCACCATTTTGGCGTTGGTAGTGCACGGGCTTTCTTTGACCGCATGGAGGTTAAGG ATACAGCGTCTTGGAACACGATGATCTCGGGTTATGCTCAGGTTGGATTGATGGGTGAGGCGAGCATGCTGTTTGCGGTG ATGCCGGAGAAAAACTGTGTCTCGTGGAGTGCGATGGTATCTGGGTATGTTGCTTGTGGGGATTTAGATGCTGCTGTGGA GTGTTTCTATGCTGCTCCGGTGAGGAGCGTGATCACGTGGACTGCTATGATCACTGGCTACATGAAGTTTGGGAGGGTTG AATCAGCAGAAAGGTTGTTTCGAGAAATGTCATTGAAGACCCTCGTGACATGGAATGCTATGATTGCTGGGTATGTTGAG AATGGAAGAGCAGAGGATGGGTTGAAGCTTTTCAAGTCAATGTTGGAAAGTGGGGCTAAGCCTAATGCTTTGAGCTTGAC TAGTGTCTTGTTGGGTTGTAGTAATTTATCAGCATTGCAACTGGGCAAACAAGTACATCAATTGGTCTGCAAATCTCCAT TGAGTAGTGATACAACCGCCGGAACTTCTCTGATTAGCATGTATGCCAAGTGTGGGGACCTAAAGGAAGCCTGGGAATTA TTTGTTCAGATTCCGAGGAAAGATATTGTGAGCTGGAACGCGATGATTTCTGGTTATGCTCAGCATGGAGCTGGTGAAAA GGCTCTTCATCTGTTTGATGAGATGAGACATGATGGCATGAAGCCAGATTGGATTACTTTCGTTGCAGTGTTATTAGCTT GTAACCATGCAGGGCTGGTAGATCTTGGGGTCCAGTATTTTAACATGATGGTAAGGGATTTTGGTATTAAAACTAAGCCA GAACACTATGCATGCATGGTTGATCTTCTTGGTCGAGCGGGTAGGTTACCAGAGGCTGTAGATTTGATAAAAAGCATGCC TTTTAAGCCCCATCCTGCGATCTTCGGCACACTTCTGGGTGCTTGTAGGATCCATAAAAACTTGGACCTTGCTGAGTTTG CTGCCAAGAATCTGCTTGAGCTTGATCCTTCTAGTGCAACTGGATATGTTCAATTGGCTAATGTTTATGCAGCACAAAAC AGATGGGAGCATGTTGCTAGGATCAGAAGATCCATGAAAGAAAATAAAGTCGTGAAGGCACCAGGGTATAGTTGGATTGA AATAAGCAGTGAGGTGCATGAGTTTAGGTCAAGTGACAGATTACACCCTGAATTGGCATCTATACATGAAAAACTAAATG AATTGGAGAAGAAAATGAAGTTGGCAGGGTACGTGCCAGATCTTGAATTTGCTTTGCATGATGTGGGAGAGGAGCTGAAA GAACAGCTTCTTTTATGGCACAGTGAGAAACTGGCAATTGCATATGGCCTTTTGAAGGTACCATTAGGGCTTCCGATCCG GGTGTTTAAAAACTTGAGAGTTTGTGGTGATTGCCATACTGCAATCAAGTATATCTCAGCAATAGAAGGAAGAGAAATCA TTGTTAGGGATACCACAAGGTTTCACCATTTCAAGGATGGGTTCTGCTCCTGCAGTGATTACTGGTAA
CDS sequence (LotjaGi4g1v0197500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTGAAGTCCACTGTTACCTGGAACTCCATCCTCTCAGCCTTTGCAAAGAAACATGGCAACTTCGAGCAAGCCCG CCAACTGTTTGAGAAAATTCCTGAACCAAACACTGTTTCATATAACATTATGTTGGCTTGTCATTTGCACCATTTTGGCG TTGGTAGTGCACGGGCTTTCTTTGACCGCATGGAGGTTAAGGATACAGCGTCTTGGAACACGATGATCTCGGGTTATGCT CAGGTTGGATTGATGGGTGAGGCGAGCATGCTGTTTGCGGTGATGCCGGAGAAAAACTGTGTCTCGTGGAGTGCGATGGT ATCTGGGTATGTTGCTTGTGGGGATTTAGATGCTGCTGTGGAGTGTTTCTATGCTGCTCCGGTGAGGAGCGTGATCACGT GGACTGCTATGATCACTGGCTACATGAAGTTTGGGAGGGTTGAATCAGCAGAAAGGTTGTTTCGAGAAATGTCATTGAAG ACCCTCGTGACATGGAATGCTATGATTGCTGGGTATGTTGAGAATGGAAGAGCAGAGGATGGGTTGAAGCTTTTCAAGTC AATGTTGGAAAGTGGGGCTAAGCCTAATGCTTTGAGCTTGACTAGTGTCTTGTTGGGTTGTAGTAATTTATCAGCATTGC AACTGGGCAAACAAGTACATCAATTGGTCTGCAAATCTCCATTGAGTAGTGATACAACCGCCGGAACTTCTCTGATTAGC ATGTATGCCAAGTGTGGGGACCTAAAGGAAGCCTGGGAATTATTTGTTCAGATTCCGAGGAAAGATATTGTGAGCTGGAA CGCGATGATTTCTGGTTATGCTCAGCATGGAGCTGGTGAAAAGGCTCTTCATCTGTTTGATGAGATGAGACATGATGGCA TGAAGCCAGATTGGATTACTTTCGTTGCAGTGTTATTAGCTTGTAACCATGCAGGGCTGGTAGATCTTGGGGTCCAGTAT TTTAACATGATGGTAAGGGATTTTGGTATTAAAACTAAGCCAGAACACTATGCATGCATGGTTGATCTTCTTGGTCGAGC GGGTAGGTTACCAGAGGCTGTAGATTTGATAAAAAGCATGCCTTTTAAGCCCCATCCTGCGATCTTCGGCACACTTCTGG GTGCTTGTAGGATCCATAAAAACTTGGACCTTGCTGAGTTTGCTGCCAAGAATCTGCTTGAGCTTGATCCTTCTAGTGCA ACTGGATATGTTCAATTGGCTAATGTTTATGCAGCACAAAACAGATGGGAGCATGTTGCTAGGATCAGAAGATCCATGAA AGAAAATAAAGTCGTGAAGGCACCAGGGTATAGTTGGATTGAAATAAGCAGTGAGGTGCATGAGTTTAGGTCAAGTGACA GATTACACCCTGAATTGGCATCTATACATGAAAAACTAAATGAATTGGAGAAGAAAATGAAGTTGGCAGGGTACGTGCCA GATCTTGAATTTGCTTTGCATGATGTGGGAGAGGAGCTGAAAGAACAGCTTCTTTTATGGCACAGTGAGAAACTGGCAAT TGCATATGGCCTTTTGAAGGTACCATTAGGGCTTCCGATCCGGGTGTTTAAAAACTTGAGAGTTTGTGGTGATTGCCATA CTGCAATCAAGTATATCTCAGCAATAGAAGGAAGAGAAATCATTGTTAGGGATACCACAAGGTTTCACCATTTCAAGGAT GGGTTCTGCTCCTGCAGTGATTACTGGTAA
Protein sequence (LotjaGi4g1v0197500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVKSTVTWNSILSAFAKKHGNFEQARQLFEKIPEPNTVSYNIMLACHLHHFGVGSARAFFDRMEVKDTASWNTMISGYA QVGLMGEASMLFAVMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPVRSVITWTAMITGYMKFGRVESAERLFREMSLK TLVTWNAMIAGYVENGRAEDGLKLFKSMLESGAKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKSPLSSDTTAGTSLIS MYAKCGDLKEAWELFVQIPRKDIVSWNAMISGYAQHGAGEKALHLFDEMRHDGMKPDWITFVAVLLACNHAGLVDLGVQY FNMMVRDFGIKTKPEHYACMVDLLGRAGRLPEAVDLIKSMPFKPHPAIFGTLLGACRIHKNLDLAEFAAKNLLELDPSSA TGYVQLANVYAAQNRWEHVARIRRSMKENKVVKAPGYSWIEISSEVHEFRSSDRLHPELASIHEKLNELEKKMKLAGYVP DLEFALHDVGEELKEQLLLWHSEKLAIAYGLLKVPLGLPIRVFKNLRVCGDCHTAIKYISAIEGREIIVRDTTRFHHFKD GFCSCSDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 127 | 126 | 9.3E-27 | ||
| ProSiteProfiles | 5 | 40 | 36 | 10.117 | ||
| Pfam | 7 | 33 | 27 | 0.087 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.841 | ||
| TIGRFAM | 71 | 101 | 31 | 1.4E-5 | ||
| Pfam | 71 | 100 | 30 | 6.8E-7 | ||
| Pfam | 101 | 123 | 23 | 0.0018 | ||
| PANTHER | 103 | 157 | 55 | 1.1E-99 | – | |
| SUPERFAMILY | 114 | 419 | 306 | 3.42E-8 | ||
| Gene3D | 128 | 221 | 94 | 5.9E-23 | ||
| ProSiteProfiles | 130 | 160 | 31 | 10.358 | ||
| Pfam | 132 | 158 | 27 | 1.8E-7 | ||
| TIGRFAM | 132 | 158 | 27 | 3.2E-6 | ||
| PANTHER | 141 | 218 | 78 | 1.1E-99 | – | |
| Pfam | 161 | 208 | 48 | 1.0E-10 | ||
| ProSiteProfiles | 161 | 195 | 35 | 13.088 | ||
| TIGRFAM | 163 | 197 | 35 | 9.2E-10 | ||
| PANTHER | 210 | 427 | 218 | 1.1E-99 | – | |
| Gene3D | 222 | 291 | 70 | 1.4E-9 | ||
| ProSiteProfiles | 231 | 261 | 31 | 8.791 | ||
| TIGRFAM | 236 | 264 | 29 | 9.4E-4 | ||
| Pfam | 261 | 308 | 48 | 1.4E-13 | ||
| ProSiteProfiles | 262 | 296 | 35 | 13.746 | ||
| TIGRFAM | 264 | 298 | 35 | 1.7E-9 | ||
| ProSiteProfiles | 297 | 327 | 31 | 6.412 | ||
| Gene3D | 314 | 458 | 145 | 7.6E-13 | ||
| ProSiteProfiles | 333 | 367 | 35 | 7.629 | ||
| Pfam | 337 | 360 | 24 | 0.053 | ||
| ProSiteProfiles | 399 | 433 | 35 | 6.665 | ||
| Pfam | 435 | 559 | 125 | 1.4E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0197500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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