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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0200100 |
| Transcript ID | LotjaGi4g1v0200100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT4G16780.1 homeobox protein 2; Swiss-Prot: sp|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT4; TrEMBL-Plants: tr|A0A151SKY7|A0A151SKY7_CAJCA Homeobox-leucine zipper protein HAT4; Found in the gene: LotjaGi4g1v0200100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46354635..46357922) extracted from Lotus japonicus Gifu genome v1.2.
ACCAAACGTGTGAGAGTGAGTTATGAAAGAAACAAAAGAAAACTAAAGTTTTCTTTATAAGAAAAGGTGCTGTCCATTTA CCAAATGGTCAAAGGTAAGAAGGTGCAAGGGTAAGATATCAATATAATGATGAAGTAAATGAGGAGAGGACAGACACAAA GCAGGGTTGTATTATTTGGGGGGCAAATGCCATGATTGAGATAACTGGTCTTTGCTGACATAAAGTCATCATTGAAACTA CACACCACTCCCAACCCCATTTACTCCCCTTTCTATATAATCAACCTCATCCCACACTCCAAAACCAAACCACACTCATC TTCCATATCTCCCCCATCCTTCTCTATATTGTGGAGAAAAAAGCTCTTTTTCTCACCAAAACCTTCTTCAAGCTCATTCT AGCCCAAAAGTGCTTATAAGAACTTATATCCTGTTTCACAAAAACTTGAAAGATGATGGTTGCAAAGGAAGATTTGGGTT TGAGTCTGAGCCTCAACTTCCCTCAGAAAACTCCAAATCCTCATCCTCTGAATCTCATGTCATCTTCCACTTACTCATCT TCTCCCTCTGGTTGCAATCCTCAAAAACCCTCTTGGAATGAACACTTCACTTCCTCAGGTATGTGTTGTTTGAGATGGTT TCCCCCCTAACTTTCACCCTGCATGTTCCAGATCTGATCAAGTTTCTATTTTTGTTTCCTCTTTCTCCTCCATTTTCTCA TTCATGTTGATTTGGCCTTGTGGGTCTTCTGCACTCTTGGTAATAACTGTTCTTCTTCTCCATGCTGTTTCATGTTTACA GATCGAAACTCTGAAACATGCAGAGGCGAAGCGGGACCGTTCCTGTTCGGAATCGACGTGAACCGGTTACCATCCGCCGT TGATTGTGAGGAGGAAGCAGGGGTTTCATCTCCCAACAGCACCGTCTCCACCGTGAGCGGAAAACGAAGCGAGAGAGAGA CCAACGGCGAAGAAGAGCACGATGGAGACGAAGAAGACGCTGAAACCGCCAGAAAAAAACTCAGGCTCTCCAAAGACCAA TCAGCTATTCTTGAAGAGAGCTTCAAAGAACACAATACCCTCAACCCTGTAAGCTTAAAAGCCCTTTTTTAAAAATGGTT TTTTCTTTGGGTGGAAACCAAACAGAATATAGTAAATTTTTTTGCTGACCAATGTGATTTTTGATTATGCAGAAGCAAAA GTTGGCACTGGCAAAACGGTTAGGCCTTCGACCTAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGAGCAAGGTTAGTTC TAGGTCACAACCCTTTTCAATTTTCAATGTTTTATTGAAAGAGTGAATCGTCAAATTTATTCCTGAAACATCATGTATCA AGCAAGTTAATCAGAAAACGTCGGTCAAGTTAATTTATAAAGATTGATTTGACCAATATTTTACACACATATCTGCGTTA CAGATTATATTTCATTTTTTTCTAGAAGCAACCTTGTGTGATGCTCACTTTCAAAAAATCTTGTGTGATGCTTATGATTT CAGTGACAAATATGGATATTCACTCAATATTTGGATCATAAATAATATTTAATATTAAAAATCCAATTCAAATATAATTT TATTTCTCAAGCTTTGATCTAACGGATTGAAATTATTACAGGACTAAGCTGAAGCAAACTGAGGTTGACTGCGAGGTGTT GAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCAGGAGCTGAGAGCACTGAAACTTT CCCCTCAATTCTACATGCAAATGACCCCACCAACGACCCTCACCATGTGCCCTTCTTGTGAGCGCGTGGCCGTGCCGTCC TCTGCCGTTGAGGCTGCAACGCGCCACCATCCCATGGCCCAAGCCCATCATCGGCCCATGCCTGTTGGCCCATGGGCTTC TGCAGCGTCTATCACTCACCGCCCTTTTGATGTTTTCCGTCACTGATCATGGCGTTTGAGGGTGATTTGGTCAATGTGAA TTTATTAATATTGACCTTTTGTTAATTGTAGTATCCAAAAAGAAGTTGATAAAAATAGGAGGAAAAAAATATGAGAAAAC GGTTGAAATAGGGAACGTTATGGTCCAAGATATGGTGATTAGGAAACATGATTTGGTGGGTCTAAAATGTTTTGTACCAG TTTTGACCCATCATCTTTTGTTTTGTAAGGGCATGACCTATTTAGTAAGTAGGGATATTTTGTTTCTCATACTTGACTTT TCTTTTTACCACTAAACAGAGCCTACTTTCGTATAAAGTGCAAATGTCTACTTAATTAATTAGTTATATATAGCCATATA GGTTTGGTCCCTTGAGATAAGGCCATAGAACAATGAAATGAAGGGCTTTTAGCCCCGGTTGTTCATAAAAAAAAAAAAAG TACAATGAAATGAAGATTATCGAAAAGATTGGAAAATAACGGGTAAACCATTCACGATCATTAAAATTAAATCTCAATAA ACACAGTCAAAGCATATATTCATGTAACTATCGTGGGAGATGAGAATAAAGGAACGACCAAGGGGAAGTGACCCTCGCAT ATCAAATTGTTCTCACAGTTTCTCATGTTAATATTTTTTTTTACTTTTCGATTCACAAATATTTTAAGGCCACACCTATA AATAATTAATATTACATATATTAAAAAGAGAAATAAACAAAAAAAATTAACAAAAGAAAAATAAGAAAATTTTGACAGAA TGAGTCAAAGATCAACAACTTATTGATATTCAATAGTCTTTTAGACATAAGAAGCTAATCTATTTATATAAATGTTAATA GTATAACAATAATTTTATTAATTTTATATTATCTTCAATATTAATATCTTAAAATTTCCTATAAAAATATCTTAAAATTA TATACTTTGTATTGAGTCAAAAGATTTAAATATGTTTAGTCTATATAAAAAATTGAGCTTATTAGTCAAATAGCTTATCA TAAGATAAAAATTTGTGTTAAACCATACCTTATAAATGGTGATAGATGAAAAATTACATATATCAAATCAATAGGCTAGT TTAGACATTATTTACACTTTGTTTGGCTGAAGAGAGAAAAAAGAAAGAAAGAAGATAAATAGAGATATGTGAGAAATAAG TGAAAAATAAAGTGAATTGATAGATTGTGTGGTATGGTATAAATAAAAGAGAAATAAAGAGGTAGATATATAAGATAAAA AAAATAAAATTTTCGTGTTTAAATTTTGAGTTTAATGGATATGCACTCAGTCAGTGTAAAATAGTTTTACACTGACATCC AATCAAGG
CDS sequence (LotjaGi4g1v0200100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTTGCAAAGGAAGATTTGGGTTTGAGTCTGAGCCTCAACTTCCCTCAGAAAACTCCAAATCCTCATCCTCTGAA TCTCATGTCATCTTCCACTTACTCATCTTCTCCCTCTGGTTGCAATCCTCAAAAACCCTCTTGGAATGAACACTTCACTT CCTCAGATCGAAACTCTGAAACATGCAGAGGCGAAGCGGGACCGTTCCTGTTCGGAATCGACGTGAACCGGTTACCATCC GCCGTTGATTGTGAGGAGGAAGCAGGGGTTTCATCTCCCAACAGCACCGTCTCCACCGTGAGCGGAAAACGAAGCGAGAG AGAGACCAACGGCGAAGAAGAGCACGATGGAGACGAAGAAGACGCTGAAACCGCCAGAAAAAAACTCAGGCTCTCCAAAG ACCAATCAGCTATTCTTGAAGAGAGCTTCAAAGAACACAATACCCTCAACCCTAAGCAAAAGTTGGCACTGGCAAAACGG TTAGGCCTTCGACCTAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACTGAGGTTGA CTGCGAGGTGTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCAGGAGCTGAGAG CACTGAAACTTTCCCCTCAATTCTACATGCAAATGACCCCACCAACGACCCTCACCATGTGCCCTTCTTGTGAGCGCGTG GCCGTGCCGTCCTCTGCCGTTGAGGCTGCAACGCGCCACCATCCCATGGCCCAAGCCCATCATCGGCCCATGCCTGTTGG CCCATGGGCTTCTGCAGCGTCTATCACTCACCGCCCTTTTGATGTTTTCCGTCACTGA
Protein sequence (LotjaGi4g1v0200100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVAKEDLGLSLSLNFPQKTPNPHPLNLMSSSTYSSSPSGCNPQKPSWNEHFTSSDRNSETCRGEAGPFLFGIDVNRLPS AVDCEEEAGVSSPNSTVSTVSGKRSERETNGEEEHDGDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKR LGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERV AVPSSAVEAATRHHPMAQAHHRPMPVGPWASAASITHRPFDVFRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 2 | 108 | 107 | 2.7E-32 | ||
| PANTHER | 3 | 279 | 277 | 1.8E-137 | – | |
| PANTHER | 3 | 279 | 277 | 1.8E-137 | – | |
| MobiDBLite | 15 | 61 | 47 | - | – | |
| MobiDBLite | 84 | 127 | 44 | - | – | |
| MobiDBLite | 89 | 104 | 16 | - | – | |
| SUPERFAMILY | 121 | 183 | 63 | 4.18E-18 | ||
| ProSiteProfiles | 122 | 182 | 61 | 17.216 | ||
| SMART | 124 | 186 | 63 | 4.2E-16 | ||
| CDD | 126 | 183 | 58 | 1.06408E-15 | ||
| Pfam | 126 | 180 | 55 | 2.6E-16 | ||
| Gene3D | 130 | 180 | 51 | 6.4E-19 | – | |
| PRINTS | 153 | 162 | 10 | 2.8E-5 | ||
| ProSitePatterns | 157 | 180 | 24 | - | ||
| PRINTS | 162 | 178 | 17 | 2.8E-5 | ||
| Coils | 181 | 218 | 38 | - | – | |
| Pfam | 182 | 216 | 35 | 1.5E-11 | ||
| SMART | 182 | 225 | 44 | 4.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0200100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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