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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0203000 |
Transcript ID | LotjaGi4g1v0203000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Asparagine-tRNA ligase; TAIR: AT4G17300.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JIW4|G7JIW4_MEDTR Asparagine-tRNA ligase; Found in the gene: LotjaGi4g1v0203000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47008710..47010082) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTTCACTCACTCACTGTTCACATACACACTGCAGAGAGAGATGAACCAAATATACTGAAGTTGTTTTAAGTTTTA ACCATTTCAGGATATTAAGGCATTCTATATGCGACAGAATGATGATGGAAAAACAGTTGCAGCTATGGACATGTTGGTTC CAAAGGTAATTTATGGGATATCACTTTTTATTCATTATTGCCTTCAATTAGTGTTTGTGAGAATGAGTAGCATATTCTCA GTACTCCTATCCAAAAGGGTAGTGGTTTAGTTTTGGTAATACCTGAAAAAAAGAAGAGAGCCTGCCTTGTGTCTTATAAT GTTATTCAGCTGGGGCCTGGGATGATATTCTGGTGGATAACATGGGATATCTTCTAAAATATATAGCCTAATATCCTCGG CTGGTGAAGCTTTGTGATTATATACATGTACTGTACTATGTTTTTGGACAACACAAAACTATGCATGTGTCCTAATGATT TATTGTCTGTGTTAGATTGGTGAACTTATTGGCGGAAGCCAAAGAGAAGAAAGGCTTGAACATCTAGAAGCTCGTTTAGA TGATTTAAAGCTGAATAAGGATGCATATTGGTGGTATCTTGATTTGCGTCGTTATGGTACAGGTCAGATGTCTCTCTCTC TTTACCCTCTTTCCTCAAGTTACCCATAGTCATATTATTAACCTAACTGTTAAGGAGTTAAAGTTAAACATTTTTAAAAT AATAGATCCCCCCATTGTCATGTCATAACTTTTTGCATGATTTCTGCATATATGCTGAACTCATGCAACGAAACTGATCT CTTGTGGAGGCAAATTTGAAGTATTATTGACTTTACTGAAGAAAACAGATCATGTGCATATGGCATATGCTACCTCTCTA CTCAATAAATCTTCGTGTATTTTTTTTTTCGGGTTATAAAACACAGTTTTATTTTTAAGGAAAGAGGAAACACAACCATC AAGGATAGTTAGCCACACGTCCACAGTGAAAAGCCTAAATAAAATTTGCTGTTTTTATCAAACTTGGTTAACGGAACACA CTCATTTCTCCCTTTTAACGTTTTTTTCATTGGAAAGTGGGATTTGTCTTTCCAATGTATGGTAACTGAGTTTTGGAGTT AAACCAAACGCTCACTTAATTACTAGCTTCGTGCGATTGTTTGTTTGGCGCCGTAATTTGCAATGTTAAACTCTTTATTT AATATATGAGAGATTGGTGATTTACTCTCCTTTGTACTGGTCTATTGTTGAATGCAGTACCTCATGCGGGCTTTGGTTTG GGGTTTGAAAGACTCGTTCAGTTCGCAACAGGAATGGACAATATAAGGGACGTGAGTCCTTTTCCTCGAGCACCTGGTTC AGCTGAGTTTTAG
CDS sequence (LotjaGi4g1v0203000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGACAGAATGATGATGGAAAAACAGTTGCAGCTATGGACATGTTGGTTCCAAAGATTGGTGAACTTATTGGCGGAAG CCAAAGAGAAGAAAGGCTTGAACATCTAGAAGCTCGTTTAGATGATTTAAAGCTGAATAAGGATGCATATTGGTGGTATC TTGATTTGCGTCGTTATGGTACAGTACCTCATGCGGGCTTTGGTTTGGGGTTTGAAAGACTCGTTCAGTTCGCAACAGGA ATGGACAATATAAGGGACGTGAGTCCTTTTCCTCGAGCACCTGGTTCAGCTGAGTTTTAG
Protein sequence (LotjaGi4g1v0203000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQNDDGKTVAAMDMLVPKIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGTVPHAGFGLGFERLVQFATG MDNIRDVSPFPRAPGSAEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 99 | 99 | 2.4E-51 | – | |
PANTHER | 1 | 99 | 99 | 2.4E-51 | – | |
Gene3D | 1 | 98 | 98 | 4.9E-35 | – | |
SUPERFAMILY | 1 | 94 | 94 | 8.95E-32 | – | |
Pfam | 2 | 92 | 91 | 1.6E-28 | ||
PRINTS | 14 | 30 | 17 | 3.5E-8 | ||
Coils | 26 | 46 | 21 | - | – | |
PRINTS | 54 | 68 | 15 | 3.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. |
Expression pattern of LotjaGi4g1v0203000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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