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LotjaGi4g1v0208700.2

Overview

Field Value
Gene ID LotjaGi4g1v0208700
Transcript ID LotjaGi4g1v0208700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G34560.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2; TrEMBL-Plants: tr|I3SHP0|I3SHP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0208700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:48414651..48415865) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATTCAAAGTTTGGGAGGAA GAAGGTTGTGCAGAATGGCGAGACTAATGATAAAGTTGTCGGTAATGGAAGTTCGTTGAGCATAATATCGAATGGTAATG GGCATTCCAAAAGGTCATCAGATATGGCCATTTACGAGCAGCTTCGGAGCCAGGGGCATAATGGGATCCACACTAATGAT GTTTCACCGAACAATATGTATGAAAGGCCGCATAAGTGTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGC AGAGAGCTTAAGTAGGGATATCATTTGTGGGAGTCTAGATGTGAAGTGGGAAAGCATAAAGGGGCTAGAGAATGCAAAAT GCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGGTTTGTTATCACCATGGAAGGGAATT CTCCTTTTTGGCCCCCCAGGGACGGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAA TATTTCAACATCATCTGTTGTCAGTAAATGGCGAGGAGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGC ATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGGA GCAAGTAGACGATTGAAAACTGAGCTACTCATTCAAATGGACGGTTTAACACAGACAGATGAACTTGTTTTTGTTTTGGC TGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCTGAAC CAGAGGCGAGAATAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTC AACCAGACCGAGGGGTATTCTGGCTCGGATATTCGATTACTTTGTAAAGAGGTAGCAATGCAGCCTTTGAGACGTTTGAT GTCACAACTTGAATAGAGACAAGATTTGGTGCCTGAAGAAGAGCTACCAAAAGTTGGGCCAATCAGACCTGAGGATATAC TGGCAGCTTTGAGGAACACAAGGCCATCTGCACATCTCCATGCCCACAAATATGACAAGTTTAATGCTGATTATGGTAGT CAAATACTTCAATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0208700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATTCAAAGTTTGGGAGGAA GAAGGTTGTGCAGAATGGCGAGACTAATGATAAAGTTGTCGGTAATGGAAGTTCGTTGAGCATAATATCGAATGGTAATG GGCATTCCAAAAGGTCATCAGATATGGCCATTTACGAGCAGCTTCGGAGCCAGGGGCATAATGGGATCCACACTAATGAT GTTTCACCGAACAATATGTATGAAAGGCCGCATAAGTGTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGC AGAGAGCTTAAGTAGGGATATCATTTGTGGGAGTCTAGATGTGAAGTGGGAAAGCATAAAGGGGCTAGAGAATGCAAAAT GCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGGTTTGTTATCACCATGGAAGGGAATT CTCCTTTTTGGCCCCCCAGGGACGGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAA TATTTCAACATCATCTGTTATGGACGGTTTAACACAGACAGATGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCT GGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCTGAACCAGAGGCGAGAATAGCA ATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTCAACCAGACCGAGGGGTA TTCTGGCTCGGATATTCGATTACTTTGTAAAGAGGTAGCAATGCAGCCTTTGAGACGTTTGATGTCACAACTTGAATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0208700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQNGETNDKVVGNGSSLSIISNGNGHSKRSSDMAIYEQLRSQGHNGIHTND VSPNNMYERPHKCLLPPFESAEMRTLAESLSRDIICGSLDVKWESIKGLENAKCLLKEAVVMPIKYPKYFTGLLSPWKGI LLFGPPGTGKTMLAKAVATECKTTFFNISTSSVMDGLTQTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARIA MFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23074
4 193 190 2.5E-139 –
PANTHER
PTHR23074:SF147
4 193 190 2.5E-139 –
SUPERFAMILY
SSF52540
119 281 163 2.75E-33
IPR027417
Gene3D
G3DSA:3.40.50.300
120 193 74 8.7E-33 –
CDD
cd00009
154 197 44 6.41279E-10 –
Pfam
PF00004
160 194 35 2.4E-10
IPR003959
Gene3D
G3DSA:3.40.50.300
194 232 39 1.6E-29 –
PANTHER
PTHR23074:SF147
194 292 99 2.5E-139 –
PANTHER
PTHR23074
194 292 99 2.5E-139 –
Gene3D
G3DSA:1.10.8.60
233 291 59 1.6E-29 –
Pfam
PF17862
258 289 32 1.9E-8
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0208700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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