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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0210300 |
| Transcript ID | LotjaGi4g1v0210300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: ATCG00480.1 ATP synthase subunit beta (ChrC); Swiss-Prot: sp|Q4VZI5|ATPB_CUCSA ATP synthase subunit beta, chloroplastic; TrEMBL-Plants: tr|M0ZKF0|M0ZKF0_SOLTU Uncharacterized protein; Found in the gene: LotjaGi4g1v0210300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48883844..48885736) extracted from Lotus japonicus Gifu genome v1.2.
ATGATAATAAATACTACCACTTCTGATCCCGAAGTTTCTGCTCTTGAAAAGAAAATACGGGACGTATCGCCCAAATAATT GGTCCGGTACTAGATGTAAATTTTCCCCCAGGGAAGATGCCCAATATTTACATTGCTCTAATAGTTAAAGGTCGAGATAC TGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGCGTTAGAGCTGTAGCTATGAGAG CTACGGATGGTCTAACGAGAGGAATGGAAGTTATTGACACAGGAGCTGCTCTAAGTGTTCCGGTGGGTGGAGTAACTCTA GGACGAATTTTCAACGTACTTGGCGAGCCTATTGATAATTTGGGTCTCGTAGATACTCGTACAACATCTCCTATTCACAG ATTCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTC CTTATCGCTGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTAATCAAT AACATTGCCAAAGCTCATGGGGGTGTGTCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAACGGTCTTTACAT GGAAATGAAAGAATCCGGAGTAATTAATGAAAAAATATTGCAGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGA ACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTGAATGAACAAGACG TACTTCTATTTATCGACAATATCTTTCGTTTCGTCCAAGCAGGATCCGAAGTATCCGCTTTATTAGGTCGAATGCCTTCC GCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCAT AACTTCTATTCAAGCAGTTTATGTACCCGCAGATGATTTAACTGATCCCGCCCCCGCCACGACATTTGCACATTTAGATG CTACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATG CTCCAACCCCGAATCGTTGGTGAAGAACATTACAAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACT TCAGGATATTATAGCTATCCTTGGGTTGGATGAATTATCTGAAGAGGACCGTTTGACCGTAGCAAGAGCACGAAAAATTG AGCGTTTCTTATCACAACCTTTTTTTGTAGCAAAAGTATTTACCGGTTCATCGGGGAAATATGTTGGTCTAGCAGAAACA ATTAGAGGGTTTAAATTGATTCTTTCTGGTGAATTAGATAGTCTTCCCGAACAAGCCTTTTATTTGGTGGGTAATATCGA TGAAGCTACCGTGAAGGCTACGAATTTAGAAAAGGAGAGAAAATTGAAGAAATGACTTTAAATCTTTGTGTACTGACCCC AAATCGAATTGTTTGGGATTCCGACGCGAAGGAAATTATTTTATCTACAAATAGTGGACAAGTTGGAATATTACCCAATC ACGCGCCTCTGGCTATGGCTTTAGATATAGGTATTTTGATAATACGCCTTAACGACCAATGGTTAACTATGGCTCTGATG GGCGGTTTTGCTCGAATAGGCAATAATGAAATCACTGTTTTAGTAAATGATGCGGAAAAAGGAAGTGACATTGATCCACA AGAAGCACAGCAAACTCTTGAAATAGCATAAGCTAATTTAAAGGAGGCTAAGGGCAAGAGACAAACAATTGAGGAAAATC TCGCTCTCAGACGAGCTAGAACACGAGTAAAGTCTATCAATATGATTTCATAA
CDS sequence (LotjaGi4g1v0210300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGAACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTGAATGA ACAAGACGTACTTCTATTTATCGACAATATCTTTCGTTTCGTCCAAGCAGGATCCGAAGTATCCGCTTTATTAGGTCGAA TGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAA GGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGATGATTTAACTGATCCCGCCCCCGCCACGACATTTGCACA TTTAGATGCTACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGT CAACTATGCTCCAACCCCGAATCGTTGGTGAAGAACATTACAAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTAC AAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGATGAATTATCTGAAGAGGACCGTTTGACCGTAGCAAGAGCACG AAAAATTGAGCGTTTCTTATCACAACCTTTTTTTGTAGCAAAAGTATTTACCGGTTCATCGGGGAAATATGTTGGTCTAG CAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGTGAATTAGATACGAAGGAAATTATTTTATCTACAAATAGTGGA CAAGTTGGAATATTACCCAATCACGCGCCTCTGGCTATGGCTTTAGATATAGGTATTTTGATAATACGCCTTAACGACCA ATGGTTAACTATGGCTCTGATGGGCGGTTTTGCTCGAATAGGCAATAATGAAATCACTGTTTTAGTAAATGATGCGGAAA AAGGAAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCATAA
Protein sequence (LotjaGi4g1v0210300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKE GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYKTAQRVKQTLQRY KELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAKVFTGSSGKYVGLAETIRGFKLILSGELDTKEIILSTNSG QVGILPNHAPLAMALDIGILIIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 134 | 134 | 3.0E-42 | ||
| PANTHER | 1 | 230 | 230 | 1.6E-149 | – | |
| PANTHER | 1 | 230 | 230 | 1.6E-149 | – | |
| Gene3D | 1 | 136 | 136 | 1.1E-60 | – | |
| SUPERFAMILY | 1 | 139 | 139 | 9.03E-48 | ||
| ProSitePatterns | 125 | 134 | 10 | - | ||
| SUPERFAMILY | 137 | 231 | 95 | 1.6E-42 | – | |
| Gene3D | 137 | 237 | 101 | 6.9E-47 | ||
| CDD | 141 | 229 | 89 | 5.04776E-63 | – | |
| Hamap | 210 | 309 | 100 | 12.214 | ||
| CDD | 221 | 310 | 90 | 7.4962E-24 | ||
| SUPERFAMILY | 226 | 293 | 68 | 3.79E-16 | ||
| Pfam | 227 | 292 | 66 | 2.4E-17 | ||
| TIGRFAM | 229 | 310 | 82 | 5.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | ATP synthesis coupled proton transport | The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. | ||
| Cellular component | Proton-transporting ATP synthase complex, catalytic core F(1) | The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. | ||
| Molecular function | Proton-transporting ATP synthase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. |
Expression pattern of LotjaGi4g1v0210300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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