Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0210300 |
Transcript ID | LotjaGi4g1v0210300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP synthase subunit beta; TAIR: ATCG00480.1 ATP synthase subunit beta (ChrC); Swiss-Prot: sp|Q4VZI5|ATPB_CUCSA ATP synthase subunit beta, chloroplastic; TrEMBL-Plants: tr|M0ZKF0|M0ZKF0_SOLTU Uncharacterized protein; Found in the gene: LotjaGi4g1v0210300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48884392..48885702) extracted from Lotus japonicus Gifu genome v1.2.
GAATTAATCAATAACATTGCCAAAGCTCATGGGGGTGTGTCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAA CGGTCTTTACATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAATATTGCAGAATCAAAAGTAGCTCTAGTCTACGG TCAAATGAATGAACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTGA ATGAACAAGACGTACTTCTATTTATCGACAATATCTTTCGTTTCGTCCAAGCAGGATCCGAAGTATCCGCTTTATTAGGT CGAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAA AGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGATGATTTAACTGATCCCGCCCCCGCCACGACATTTG CACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCA ACGTCAACTATGCTCCAACCCCGAATCGTTGGTGAAGAACATTACAAAACTGCGCAAAGAGTTAAACAAACTTTACAACG TTACAAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGATGAATTATCTGAAGAGGACCGTTTGACCGTAGCAAGAG CACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTTGTAGCAAAAGTATTTACCGGTTCATCGGGGAAATATGTTGGT CTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGTGAATTAGATAGTCTTCCCGAACAAGCCTTTTATTTGGT GGGTAATATCGATGAAGCTACCGTGAAGGCTACGAATTTAGAAAAGGAGAGAAAATTGAAGAAATGACTTTAAATCTTTG TGTACTGACCCCAAATCGAATTGTTTGGGATTCCGACGCGAAGGAAATTATTTTATCTACAAATAGTGGACAAGTTGGAA TATTACCCAATCACGCGCCTCTGGCTATGGCTTTAGATATAGGTATTTTGATAATACGCCTTAACGACCAATGGTTAACT ATGGCTCTGATGGGCGGTTTTGCTCGAATAGGCAATAATGAAATCACTGTTTTAGTAAATGATGCGGAAAAAGGAAGTGA CATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCATAAGCTAATTTAAAGGAGGCTAAGGGCAAGAGACAAACAA TTGAGGAAAATCTCGCTCTCAGACGAGCTAG
CDS sequence (LotjaGi4g1v0210300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGAACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTGAATGA ACAAGACGTACTTCTATTTATCGACAATATCTTTCGTTTCGTCCAAGCAGGATCCGAAGTATCCGCTTTATTAGGTCGAA TGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAA GGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGATGATTTAACTGATCCCGCCCCCGCCACGACATTTGCACA TTTAGATGCTACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGT CAACTATGCTCCAACCCCGAATCGTTGGTGAAGAACATTACAAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTAC AAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGATGAATTATCTGAAGAGGACCGTTTGACCGTAGCAAGAGCACG AAAAATTGAGCGTTTCTTATCACAACCTTTTTTTGTAGCAAAAGTATTTACCGGTTCATCGGGGAAATATGTTGGTCTAG CAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGTGAATTAGATACGAAGGAAATTATTTTATCTACAAATAGTGGA CAAGTTGGAATATTACCCAATCACGCGCCTCTGGCTATGGCTTTAGATATAGGTATTTTGATAATACGCCTTAACGACCA ATGGTTAACTATGGCTCTGATGGGCGGTTTTGCTCGAATAGGCAATAATGAAATCACTGTTTTAGTAAATGATGCGGAAA AAGGAAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCATAA
Protein sequence (LotjaGi4g1v0210300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKE GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYKTAQRVKQTLQRY KELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAKVFTGSSGKYVGLAETIRGFKLILSGELDTKEIILSTNSG QVGILPNHAPLAMALDIGILIIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 1 | 134 | 134 | 3.0E-42 | ||
PANTHER | 1 | 230 | 230 | 1.6E-149 | – | |
PANTHER | 1 | 230 | 230 | 1.6E-149 | – | |
Gene3D | 1 | 136 | 136 | 1.1E-60 | – | |
SUPERFAMILY | 1 | 139 | 139 | 9.03E-48 | ||
ProSitePatterns | 125 | 134 | 10 | - | ||
SUPERFAMILY | 137 | 231 | 95 | 1.6E-42 | – | |
Gene3D | 137 | 237 | 101 | 6.9E-47 | ||
CDD | 141 | 229 | 89 | 5.04776E-63 | – | |
Hamap | 210 | 309 | 100 | 12.214 | ||
CDD | 221 | 310 | 90 | 7.4962E-24 | ||
SUPERFAMILY | 226 | 293 | 68 | 3.79E-16 | ||
Pfam | 227 | 292 | 66 | 2.4E-17 | ||
TIGRFAM | 229 | 310 | 82 | 5.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | ATP synthesis coupled proton transport | The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. | ||
Cellular component | Proton-transporting ATP synthase complex, catalytic core F(1) | The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. | ||
Molecular function | Proton-transporting ATP synthase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. |
Expression pattern of LotjaGi4g1v0210300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…