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LotjaGi4g1v0212300.1

Overview

Field Value
Gene ID LotjaGi4g1v0212300
Transcript ID LotjaGi4g1v0212300.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|I1K0I6|I1K0I6_SOYBN ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi4g1v0212300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:49438000..49442756) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATAATAACAAAATCAGTAGGAAGATTAAAACGGCGTCGTATGATTCTTCATCTTCAACGTTGCAAGTAATCTGTTC ATCGGTGATTGAATCACAACAGTGGCTTTCTCTTCCTATCTTGCTTACTCTCCGTCTGAACATGGCGGTCGCGCCCTACA CGACCGGTTCCGCACCTCGTCTTTGTCCCCCTTCAAGGTTACAATCTCTGTCTCTTTTCATCCCACAAATGATTTTGATA GTAACGCCTTACCAGTTTTTCTCCTTTCATGTTGCAGTTGCGCTACAAAAATCTACACCGGGTTGAAACCCCAATCTGCG AGTGTGTTCTCTTCGCTCACTTTGGTGTTCTTCTTTTGTGTTTTTGTGTGGTTGGTTTCTCACTGTTTTTCCATTGCAGG TCCTTTTGGTGCGGCTATACCTAACGTCAACGCTGAGTTTTATGCCAAAGTTGATAAGACTCTTCAGTGCCGGTAATCCT TTGCTCTGCTCTTATATCCCCTACCCCATTTTCAATTTTTCTTCTTTTCTTAATTATGGGTTTGTAGGATTTTTTTTTTG TGGTTGTTGGTGCCATCTTTGATGTGCTAAATCTTGCAAATTAAACCTTGACTTGAATAGTAATATGTTGTATTTGAATT GCTACTCTTACGCCTCCGTTTGTATCAGCTAGTGATTAGTTAGTTATCTGACTATAATTGTTCCCTTGCATTTGTCACTT TCATGCAATGAACAATTTATTTTTAGGGGCCCTATTTCATTTCTTCCTCTTGGTAACTCTGTTTGCAAATAGTAAGAGAT GATGTATTGTCGTGTAAGTTTGGCTGCTCTAGTCCTCTAAGTAAGGCATCCCAATTGTGGATAAGAAAATCAAGAGAGCA CACTTTAGAAAATTTATGATTTAAATATGTGCATGTAATATCAATAGTTGATGTTCCAATTATGCGTTAGTTTTTTCGCT AAAGTGAGAGCTCACTTTTAGAGAAGGCAAGTTTATTACTGTATCTGTAATTCTGTATTCCAAAAATATGGGAGCACAAT GCTTTTAGTCCAATGCAGTTTTCCTTGCTGCAGGAAGCAAGCCCACTATATCTTCGTTCTTTTTTATTACTGTTTGATTA GCAAGTAATTTTACTCCATAATTAAATTCATAATGGCCATATGTATAATGATTTGCATTTTTAGTAACAATTGTGAATTG GAAAGAGCATTCAATACTTAATAATCTTTGACCTAGTGATAAGGATATAGCATGGTTTATGCCCCTTGAGAACAAACCAA TGTCACACTTTGTAAAAGAGTTTGTCACAAATGTTATATATCCTATATCATTTTGTGAACAGACTGATGCAAACAGTTTA AATTTTTCATTTGTTAGGTATGCTAACCACAAACCAGTAAGAGCACGAATTCAAATGATGCCTATAGGAACTCCGAGAGT CCCATATAGGACACCTGGTGAAGGAACTTGGCAATGGGTTGATATATGGAATGCCCTTGTAAGTTGTTATACCCGGAATA TATATTTAATTTTACACCTTATGCTTCTAAAAGATGCTGGCTTTTCTCTGTGTTGCATACGTATAGAGCACATGTGAACC CCAAGTTCTTATAGATTTTCATCTCTTTTGTAAAGTTAATTTCTGCAATAACGTGCATTATTGGATGCAGTATCGAGAAC GTGTTATCTTCATTGGACAAGAGATAGATGAAGAATTTAGTAATCAAATATTGGCAACTATGCTGTATCTTGACAGCGTA GATAACGCCAAGAAGCTCTATATGTACATCAATGGTCCTGGTGGGGATGTAAGTCTCAAAAGATTCTGGTGTTAGATGAT CAATCAATTACCATTTCTTGCTTCATCTTATTTTTTGACTAGTCACATGTTTAACTTGCTTAATCTTGCAACATTTGCAG CTTACACCAACCATGGCTATCTATGACACCATGCAGAGCTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTA TAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGGTACTATATCATCACGTGGCCTATGAATACAACTTGTAGGAGT TAAGTTTGTCCCACTATGGGGTTGTTCGGTTAGAGATTTCCAACAACAACAGTTACAAGTCTTTTTCCCACTATGCGGGG TCAGCTACATGGATCAACGATGCCATAATTCCTTGTCATGTATCAAGTCTAAAGATAGATCATTTACCTCCGAGTTTATC TTAATTGTTTGACATGTAGTTTTTGTTATTTTCCCTCCACCTCTAATTATTCAACTATCCTCTATGTGCTCAATATGACC TACCCTTTTTAGTGGTGCTTCTCCATATAATACTCGAATAAGTCAAGACTCTTCCATATGTTTCACAATAGGAACTATCA TAACTTTCTCTGTACTGATTATGTTCTTAATCCTATCTTGCCCTGTGTAACCACTCATGCAACATTCTCATTTCCGCCAC ACTAGTCTTGTTTTCTTCTTGGTTCTCAATTGCCTTACATTCTGTGCCATGCAAGTGCGACACTGCAGGTCTTATAGTTG TAAGGTTAGAGATGTCTGTTTTCAATATAACCAAAACATGATCTATGTTGTATGGACTTTATACTTGTCCATTGAAGAAT TATCTTTGTAACTTGTATCAATATATCTTTATCCACATCAATTTGTATCAAGATATCTGTACCCACACCACTAGCTCGAT TAAAAATTATGTTTGACATAAGTATACATTTTAAACGACTGACCTCATATCATTATATATCATTATATATAACCAAAATG GAAGAAAATAATTTTCTCTCTACTTGTGTGGCCTAAGGTGGAGTACCTGACATATGTGTTTTATATTTATAGCATTATCT TGTCTTTCATGAATCACCATCTTTTTCGGGACTGCATGTTACAATTATAAAGTTGTCAGGTCCTAAAGTTCTACTTTCTG ATCCATGCTGCTGTCTTGTCTGGTTCATGTCTAATTGGTTTCATGCAATTTGTGCCTTGTGCTCATTGTATCGAGCCAAT TAATCTTTCTGCATTAAAAATAGTTCTGATGTTCTGTTGGTCTTTACATGATGTTCTGTTGGTCTTTACATGATGTTCTG TTGTATCAAGGGAAATCGTTATGCAATGCCTCTTTCAAGAATTGCGCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCAGG TATGTTTGTTTTCTGTCTGAGATGTATGAATGGGGTTGATTTTATCTTTTGATGCTGACATAATGAATTTTTTTTCAGGC TGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTTTTCAATGAGTTGGCTACCAAAACAGGCC AGCCTGTTGAGAAGGTCAGTTCACTCTACAATGAAATACATGATAAATGAGTTTGTATAACTTCTGTTATCATTCACATC TCATGACTGTAAATTTGTTTGGCCCATCAACTTACTATATGACCCAAAAAATGAAGCTTTTGAAAAATATTAGCTTTTCT TTGGGAATGAAGTTTTTGAAAAATATTAGCTTTTCTTTGGGAATGAAGTCAAATTCAACCTTGACGTACTGCTCAACAAG GCTTTTTGTGTGTTTGTATTTCTGTTAGTGCACATTCTAATGCAATTTTGATGTGCTTTTGGTCAATCCAATTCCCTTGT GTCATTGGAGTGGACCTGTTTTTTATCAACTAACAAAGTAAACAGATTAAGCACTTATGGCAATAAGCGCTTACATAAGC TAACTTGAGAATTGAAATAAACTGATAATAGGTTATGGTTAAGCATAAGCTCTTATTCATAAGCTAATCAAAAACAACTT AAGGTAGACCATATGTTATTTACATTAGTTCTCCCGAGCACTTGCATAAGCACTTGTGTTATAAGCTCAAAGCTCTTCCA AACGGGGCCTAAGCCTCTTGCATTTATAAGTGTTTAGTTCCTCCCTTGCTTGGCGTTTATATTAAAATTTGAGAATATGA GCTTTATTAGCTTGAAAACTAATGTTTAATGCATCTGTTCAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGC ACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTGTCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACG GAAGCACAGGGCTGGGTTAAGAACTCATGATTTGCAATCCACATGCTGAGTAATTATTGCAGAATCAAAATGTTCCTCAT GTTATATTTCCTTCACCAATTTTTGCAAGATGTGTAACGTTTGATAGTTATATATATTTTCATGTATCTAGAAATGGATG AATTCCAATTCTTATTGATAGCAGTAACAGAAGGTGGCTGAAGTTGCTGCCTAACTTTACAACACCCTCCTTTCTTGTCC CTTGCTCTCCATTGTCCAATCTCATCTCAGTGCGTGAAAAAGAACTAATATCATCTCCCCAAATGAGATTTGTGAGCAAA GTAAAGGAGAGTAAGACACAAACATTACTAATAAAATATTCATTTTAATGCATTAAGAAGTTCCATATTAAAGATCATTT TATATTATGAATTCTGCGTGTTAGAGCGAAGATATGTCTAGTAAGGGTATTTTCGAAAATGAGATGGCATGAAGATGAAA GGGGGTGATACCATAATCAAATCCCTGTAATTGTCATAAGCTCGTGACATTGAAGTAAGGGTGTATGAATTCAGGAGTTT TCTACACATACTATACAGTAGTACTAGTTTGTTTGGC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGTCGCGCCCTACACGACCGGTTCCGCACCTCGTCTTTGTCCCCCTTCAAGTTGCGCTACAAAAATCTACACCGG GTTGAAACCCCAATCTGCGAGTCCTTTTGGTGCGGCTATACCTAACGTCAACGCTGAGTTTTATGCCAAAGTTGATAAGA CTCTTCAGTGCCGGTATGCTAACCACAAACCAGTAAGAGCACGAATTCAAATGATGCCTATAGGAACTCCGAGAGTCCCA TATAGGACACCTGGTGAAGGAACTTGGCAATGGGTTGATATATGGAATGCCCTTTATCGAGAACGTGTTATCTTCATTGG ACAAGAGATAGATGAAGAATTTAGTAATCAAATATTGGCAACTATGCTGTATCTTGACAGCGTAGATAACGCCAAGAAGC TCTATATGTACATCAATGGTCCTGGTGGGGATCTTACACCAACCATGGCTATCTATGACACCATGCAGAGCTTGCAAAGT CCTGTAGCCACCCATTGTGTTGGCTATGCTTATAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGGGAAATCGTTA TGCAATGCCTCTTTCAAGAATTGCGCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCAGGCTGATGACATCCAGAATGAAG CAAATGAACTTCTTAGAATCAGAGATTACCTTTTCAATGAGTTGGCTACCAAAACAGGCCAGCCTGTTGAGAAGATTACC CAAGACCTGAGCAGGATGAAACGTTTCAATGCACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTGTCAGGCCACC CCGCATAAAGGCTGATGCACCTGTCAAGGACGGAAGCACAGGGCTGGGTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0212300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVAPYTTGSAPRLCPPSSCATKIYTGLKPQSASPFGAAIPNVNAEFYAKVDKTLQCRYANHKPVRARIQMMPIGTPRVP YRTPGEGTWQWVDIWNALYRERVIFIGQEIDEEFSNQILATMLYLDSVDNAKKLYMYINGPGGDLTPTMAIYDTMQSLQS PVATHCVGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDYLFNELATKTGQPVEKIT QDLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGSTGLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10381:SF46
66 283 218 2.1E-123 –
PANTHER
PTHR10381
66 283 218 2.1E-123
IPR023562
Gene3D
G3DSA:3.90.226.10
75 273 199 5.8E-60 –
Hamap
MF_00444
75 267 193 33.455
IPR001907
SUPERFAMILY
SSF52096
86 267 182 1.27E-55
IPR029045
Pfam
PF00574
90 265 176 8.7E-64
IPR023562
PRINTS
PR00127
93 108 16 2.8E-33
IPR001907
CDD
cd07017
93 263 171 2.68963E-77
IPR001907
PRINTS
PR00127
133 153 21 2.8E-33
IPR001907
PRINTS
PR00127
164 181 18 2.8E-33
IPR001907
PRINTS
PR00127
185 204 20 2.8E-33
IPR001907
PRINTS
PR00127
242 261 20 2.8E-33
IPR001907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0212300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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