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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212300 |
| Transcript ID | LotjaGi4g1v0212300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49438577..49440857) extracted from Lotus japonicus Gifu genome v1.2.
TTAATCTTGCAACATTTGCAGCTTACACCAACCATGGCTATCTATGACACCATGCAGAGCTTGCAAAGTCCTGTAGCCAC CCATTGTGTTGGCTATGCTTATAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGGTACTATATCATCACGTGGCCT ATGAATACAACTTGTAGGAGTTAAGTTTGTCCCACTATGGGGTTGTTCGGTTAGAGATTTCCAACAACAACAGTTACAAG TCTTTTTCCCACTATGCGGGGTCAGCTACATGGATCAACGATGCCATAATTCCTTGTCATGTATCAAGTCTAAAGATAGA TCATTTACCTCCGAGTTTATCTTAATTGTTTGACATGTAGTTTTTGTTATTTTCCCTCCACCTCTAATTATTCAACTATC CTCTATGTGCTCAATATGACCTACCCTTTTTAGTGGTGCTTCTCCATATAATACTCGAATAAGTCAAGACTCTTCCATAT GTTTCACAATAGGAACTATCATAACTTTCTCTGTACTGATTATGTTCTTAATCCTATCTTGCCCTGTGTAACCACTCATG CAACATTCTCATTTCCGCCACACTAGTCTTGTTTTCTTCTTGGTTCTCAATTGCCTTACATTCTGTGCCATGCAAGTGCG ACACTGCAGGTCTTATAGTTGTAAGGTTAGAGATGTCTGTTTTCAATATAACCAAAACATGATCTATGTTGTATGGACTT TATACTTGTCCATTGAAGAATTATCTTTGTAACTTGTATCAATATATCTTTATCCACATCAATTTGTATCAAGATATCTG TACCCACACCACTAGCTCGATTAAAAATTATGTTTGACATAAGTATACATTTTAAACGACTGACCTCATATCATTATATA TCATTATATATAACCAAAATGGAAGAAAATAATTTTCTCTCTACTTGTGTGGCCTAAGGTGGAGTACCTGACATATGTGT TTTATATTTATAGCATTATCTTGTCTTTCATGAATCACCATCTTTTTCGGGACTGCATGTTACAATTATAAAGTTGTCAG GTCCTAAAGTTCTACTTTCTGATCCATGCTGCTGTCTTGTCTGGTTCATGTCTAATTGGTTTCATGCAATTTGTGCCTTG TGCTCATTGTATCGAGCCAATTAATCTTTCTGCATTAAAAATAGTTCTGATGTTCTGTTGGTCTTTACATGATGTTCTGT TGGTCTTTACATGATGTTCTGTTGTATCAAGGGAAATCGTTATGCAATGCCTCTTTCAAGAATTGCGCTCCAATCTCCAG CAGGAGCTGCTCGTGGTCAGGTATGTTTGTTTTCTGTCTGAGATGTATGAATGGGGTTGATTTTATCTTTTGATGCTGAC ATAATGAATTTTTTTTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTTTTCAATG AGTTGGCTACCAAAACAGGCCAGCCTGTTGAGAAGGTCAGTTCACTCTACAATGAAATACATGATAAATGAGTTTGTATA ACTTCTGTTATCATTCACATCTCATGACTGTAAATTTGTTTGGCCCATCAACTTACTATATGACCCAAAAAATGAAGCTT TTGAAAAATATTAGCTTTTCTTTGGGAATGAAGTTTTTGAAAAATATTAGCTTTTCTTTGGGAATGAAGTCAAATTCAAC CTTGACGTACTGCTCAACAAGGCTTTTTGTGTGTTTGTATTTCTGTTAGTGCACATTCTAATGCAATTTTGATGTGCTTT TGGTCAATCCAATTCCCTTGTGTCATTGGAGTGGACCTGTTTTTTATCAACTAACAAAGTAAACAGATTAAGCACTTATG GCAATAAGCGCTTACATAAGCTAACTTGAGAATTGAAATAAACTGATAATAGGTTATGGTTAAGCATAAGCTCTTATTCA TAAGCTAATCAAAAACAACTTAAGGTAGACCATATGTTATTTACATTAGTTCTCCCGAGCACTTGCATAAGCACTTGTGT TATAAGCTCAAAGCTCTTCCAAACGGGGCCTAAGCCTCTTGCATTTATAAGTGTTTAGTTCCTCCCTTGCTTGGCGTTTA TATTAAAATTTGAGAATATGAGCTTTATTAGCTTGAAAACTAATGTTTAATGCATCTGTTCAGATTACCCAAGACCTGAG CAGGATGAAACGTTTCAATGCACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTGTCAGGCCACCCCGCATAAAGG CTGATGCACCTGTCAAGGACGGAAGCACAGGGCTGGGTTAA
CDS sequence (LotjaGi4g1v0212300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATCTATGACACCATGCAGAGCTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTATAATCTTGCAGC ATTTCTCCTTGCGGCTGGATTGAAGGGAAATCGTTATGCAATGCCTCTTTCAAGAATTGCGCTCCAATCTCCAGCAGGAG CTGCTCGTGGTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTTTTCAATGAGTTG GCTACCAAAACAGGCCAGCCTGTTGAGAAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGCACAAGAGGCTCT TGAATATGGGCTCATTGATCGAATTGTCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACGGAAGCACAGGGC TGGGTTAA
Protein sequence (LotjaGi4g1v0212300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDYLFNEL ATKTGQPVEKITQDLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGSTGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 8.8E-73 | – | |
| Pfam | 1 | 117 | 117 | 1.8E-40 | ||
| PANTHER | 1 | 135 | 135 | 8.8E-73 | ||
| CDD | 1 | 115 | 115 | 1.90004E-45 | ||
| SUPERFAMILY | 1 | 119 | 119 | 1.99E-34 | ||
| Gene3D | 1 | 117 | 117 | 6.7E-39 | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 34 | 21 | - | – | |
| PRINTS | 16 | 33 | 18 | 3.2E-15 | ||
| Phobius | 35 | 135 | 101 | - | – | |
| PRINTS | 37 | 56 | 20 | 3.2E-15 | ||
| PRINTS | 94 | 113 | 20 | 3.2E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0212300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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