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LotjaGi4g1v0212300.3

Overview

Field Value
Gene ID LotjaGi4g1v0212300
Transcript ID LotjaGi4g1v0212300.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:49438577..49441678) extracted from Lotus japonicus Gifu genome v1.2.

AAGCCCACTATATCTTCGTTCTTTTTTATTACTGTTTGATTAGCAAGTAATTTTACTCCATAATTAAATTCATAATGGCC ATATGTATAATGATTTGCATTTTTAGTAACAATTGTGAATTGGAAAGAGCATTCAATACTTAATAATCTTTGACCTAGTG ATAAGGATATAGCATGGTTTATGCCCCTTGAGAACAAACCAATGTCACACTTTGTAAAAGAGTTTGTCACAAATGTTATA TATCCTATATCATTTTGTGAACAGACTGATGCAAACAGTTTAAATTTTTCATTTGTTAGGTATGCTAACCACAAACCAGT AAGAGCACGAATTCAAATGATGCCTATAGGAACTCCGAGAGTCCCATATAGGACACCTGGTGAAGGAACTTGGCAATGGG TTGATATATGGAATGCCCTTGTAAGTTGTTATACCCGGAATATATATTTAATTTTACACCTTATGCTTCTAAAAGATGCT GGCTTTTCTCTGTGTTGCATACGTATAGAGCACATGTGAACCCCAAGTTCTTATAGATTTTCATCTCTTTTGTAAAGTTA ATTTCTGCAATAACGTGCATTATTGGATGCAGTATCGAGAACGTGTTATCTTCATTGGACAAGAGATAGATGAAGAATTT AGTAATCAAATATTGGCAACTATGCTGTATCTTGACAGCGTAGATAACGCCAAGAAGCTCTATATGTACATCAATGGTCC TGGTGGGGATGTAAGTCTCAAAAGATTCTGGTGTTAGATGATCAATCAATTACCATTTCTTGCTTCATCTTATTTTTTGA CTAGTCACATGTTTAACTTGCTTAATCTTGCAACATTTGCAGCTTACACCAACCATGGCTATCTATGACACCATGCAGAG CTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTATAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGG TACTATATCATCACGTGGCCTATGAATACAACTTGTAGGAGTTAAGTTTGTCCCACTATGGGGTTGTTCGGTTAGAGATT TCCAACAACAACAGTTACAAGTCTTTTTCCCACTATGCGGGGTCAGCTACATGGATCAACGATGCCATAATTCCTTGTCA TGTATCAAGTCTAAAGATAGATCATTTACCTCCGAGTTTATCTTAATTGTTTGACATGTAGTTTTTGTTATTTTCCCTCC ACCTCTAATTATTCAACTATCCTCTATGTGCTCAATATGACCTACCCTTTTTAGTGGTGCTTCTCCATATAATACTCGAA TAAGTCAAGACTCTTCCATATGTTTCACAATAGGAACTATCATAACTTTCTCTGTACTGATTATGTTCTTAATCCTATCT TGCCCTGTGTAACCACTCATGCAACATTCTCATTTCCGCCACACTAGTCTTGTTTTCTTCTTGGTTCTCAATTGCCTTAC ATTCTGTGCCATGCAAGTGCGACACTGCAGGTCTTATAGTTGTAAGGTTAGAGATGTCTGTTTTCAATATAACCAAAACA TGATCTATGTTGTATGGACTTTATACTTGTCCATTGAAGAATTATCTTTGTAACTTGTATCAATATATCTTTATCCACAT CAATTTGTATCAAGATATCTGTACCCACACCACTAGCTCGATTAAAAATTATGTTTGACATAAGTATACATTTTAAACGA CTGACCTCATATCATTATATATCATTATATATAACCAAAATGGAAGAAAATAATTTTCTCTCTACTTGTGTGGCCTAAGG TGGAGTACCTGACATATGTGTTTTATATTTATAGCATTATCTTGTCTTTCATGAATCACCATCTTTTTCGGGACTGCATG TTACAATTATAAAGTTGTCAGGTCCTAAAGTTCTACTTTCTGATCCATGCTGCTGTCTTGTCTGGTTCATGTCTAATTGG TTTCATGCAATTTGTGCCTTGTGCTCATTGTATCGAGCCAATTAATCTTTCTGCATTAAAAATAGTTCTGATGTTCTGTT GGTCTTTACATGATGTTCTGTTGGTCTTTACATGATGTTCTGTTGTATCAAGGGAAATCGTTATGCAATGCCTCTTTCAA GAATTGCGCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCAGGTATGTTTGTTTTCTGTCTGAGATGTATGAATGGGGTTG ATTTTATCTTTTGATGCTGACATAATGAATTTTTTTTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAA TCAGAGATTACCTTTTCAATGAGTTGGCTACCAAAACAGGCCAGCCTGTTGAGAAGGTCAGTTCACTCTACAATGAAATA CATGATAAATGAGTTTGTATAACTTCTGTTATCATTCACATCTCATGACTGTAAATTTGTTTGGCCCATCAACTTACTAT ATGACCCAAAAAATGAAGCTTTTGAAAAATATTAGCTTTTCTTTGGGAATGAAGTTTTTGAAAAATATTAGCTTTTCTTT GGGAATGAAGTCAAATTCAACCTTGACGTACTGCTCAACAAGGCTTTTTGTGTGTTTGTATTTCTGTTAGTGCACATTCT AATGCAATTTTGATGTGCTTTTGGTCAATCCAATTCCCTTGTGTCATTGGAGTGGACCTGTTTTTTATCAACTAACAAAG TAAACAGATTAAGCACTTATGGCAATAAGCGCTTACATAAGCTAACTTGAGAATTGAAATAAACTGATAATAGGTTATGG TTAAGCATAAGCTCTTATTCATAAGCTAATCAAAAACAACTTAAGGTAGACCATATGTTATTTACATTAGTTCTCCCGAG CACTTGCATAAGCACTTGTGTTATAAGCTCAAAGCTCTTCCAAACGGGGCCTAAGCCTCTTGCATTTATAAGTGTTTAGT TCCTCCCTTGCTTGGCGTTTATATTAAAATTTGAGAATATGAGCTTTATTAGCTTGAAAACTAATGTTTAATGCATCTGT TCAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGCACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTG TCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACGGAAGCACAGGGCTGGGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0212300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCCTATAGGAACTCCGAGAGTCCCATATAGGACACCTGGTGAAGGAACTTGGCAATGGGTTGATATATGGAATGC CCTTTATCGAGAACGTGTTATCTTCATTGGACAAGAGATAGATGAAGAATTTAGTAATCAAATATTGGCAACTATGCTGT ATCTTGACAGCGTAGATAACGCCAAGAAGCTCTATATGTACATCAATGGTCCTGGTGGGGATCTTACACCAACCATGGCT ATCTATGACACCATGCAGAGCTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTATAATCTTGCAGCATTTCT CCTTGCGGCTGGATTGAAGGGAAATCGTTATGCAATGCCTCTTTCAAGAATTGCGCTCCAATCTCCAGCAGGAGCTGCTC GTGGTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTTTTCAATGAGTTGGCTACC AAAACAGGCCAGCCTGTTGAGAAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGCACAAGAGGCTCTTGAATA TGGGCTCATTGATCGAATTGTCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACGGAAGCACAGGGCTGGGTT AA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0212300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMPIGTPRVPYRTPGEGTWQWVDIWNALYRERVIFIGQEIDEEFSNQILATMLYLDSVDNAKKLYMYINGPGGDLTPTMA IYDTMQSLQSPVATHCVGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDYLFNELAT KTGQPVEKITQDLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGSTGLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10381:SF46
5 213 209 8.1E-123 –
PANTHER
PTHR10381
5 213 209 8.1E-123
IPR023562
Hamap
MF_00444
5 197 193 33.455
IPR001907
Gene3D
G3DSA:3.90.226.10
6 203 198 2.3E-60 –
SUPERFAMILY
SSF52096
16 197 182 4.98E-56
IPR029045
Pfam
PF00574
20 195 176 3.5E-64
IPR023562
PRINTS
PR00127
23 38 16 9.1E-34
IPR001907
CDD
cd07017
23 193 171 6.61119E-77
IPR001907
PRINTS
PR00127
63 83 21 9.1E-34
IPR001907
PRINTS
PR00127
94 111 18 9.1E-34
IPR001907
PRINTS
PR00127
115 134 20 9.1E-34
IPR001907
PRINTS
PR00127
172 191 20 9.1E-34
IPR001907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0212300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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