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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212300 |
| Transcript ID | LotjaGi4g1v0212300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G12410.1 CLP protease proteolytic subunit 2; Swiss-Prot: sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7I6X0|A0A1J7I6X0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0212300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49438577..49441678) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCCACTATATCTTCGTTCTTTTTTATTACTGTTTGATTAGCAAGTAATTTTACTCCATAATTAAATTCATAATGGCC ATATGTATAATGATTTGCATTTTTAGTAACAATTGTGAATTGGAAAGAGCATTCAATACTTAATAATCTTTGACCTAGTG ATAAGGATATAGCATGGTTTATGCCCCTTGAGAACAAACCAATGTCACACTTTGTAAAAGAGTTTGTCACAAATGTTATA TATCCTATATCATTTTGTGAACAGACTGATGCAAACAGTTTAAATTTTTCATTTGTTAGGTATGCTAACCACAAACCAGT AAGAGCACGAATTCAAATGATGCCTATAGGAACTCCGAGAGTCCCATATAGGACACCTGGTGAAGGAACTTGGCAATGGG TTGATATATGGAATGCCCTTGTAAGTTGTTATACCCGGAATATATATTTAATTTTACACCTTATGCTTCTAAAAGATGCT GGCTTTTCTCTGTGTTGCATACGTATAGAGCACATGTGAACCCCAAGTTCTTATAGATTTTCATCTCTTTTGTAAAGTTA ATTTCTGCAATAACGTGCATTATTGGATGCAGTATCGAGAACGTGTTATCTTCATTGGACAAGAGATAGATGAAGAATTT AGTAATCAAATATTGGCAACTATGCTGTATCTTGACAGCGTAGATAACGCCAAGAAGCTCTATATGTACATCAATGGTCC TGGTGGGGATGTAAGTCTCAAAAGATTCTGGTGTTAGATGATCAATCAATTACCATTTCTTGCTTCATCTTATTTTTTGA CTAGTCACATGTTTAACTTGCTTAATCTTGCAACATTTGCAGCTTACACCAACCATGGCTATCTATGACACCATGCAGAG CTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTATAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGG TACTATATCATCACGTGGCCTATGAATACAACTTGTAGGAGTTAAGTTTGTCCCACTATGGGGTTGTTCGGTTAGAGATT TCCAACAACAACAGTTACAAGTCTTTTTCCCACTATGCGGGGTCAGCTACATGGATCAACGATGCCATAATTCCTTGTCA TGTATCAAGTCTAAAGATAGATCATTTACCTCCGAGTTTATCTTAATTGTTTGACATGTAGTTTTTGTTATTTTCCCTCC ACCTCTAATTATTCAACTATCCTCTATGTGCTCAATATGACCTACCCTTTTTAGTGGTGCTTCTCCATATAATACTCGAA TAAGTCAAGACTCTTCCATATGTTTCACAATAGGAACTATCATAACTTTCTCTGTACTGATTATGTTCTTAATCCTATCT TGCCCTGTGTAACCACTCATGCAACATTCTCATTTCCGCCACACTAGTCTTGTTTTCTTCTTGGTTCTCAATTGCCTTAC ATTCTGTGCCATGCAAGTGCGACACTGCAGGTCTTATAGTTGTAAGGTTAGAGATGTCTGTTTTCAATATAACCAAAACA TGATCTATGTTGTATGGACTTTATACTTGTCCATTGAAGAATTATCTTTGTAACTTGTATCAATATATCTTTATCCACAT CAATTTGTATCAAGATATCTGTACCCACACCACTAGCTCGATTAAAAATTATGTTTGACATAAGTATACATTTTAAACGA CTGACCTCATATCATTATATATCATTATATATAACCAAAATGGAAGAAAATAATTTTCTCTCTACTTGTGTGGCCTAAGG TGGAGTACCTGACATATGTGTTTTATATTTATAGCATTATCTTGTCTTTCATGAATCACCATCTTTTTCGGGACTGCATG TTACAATTATAAAGTTGTCAGGTCCTAAAGTTCTACTTTCTGATCCATGCTGCTGTCTTGTCTGGTTCATGTCTAATTGG TTTCATGCAATTTGTGCCTTGTGCTCATTGTATCGAGCCAATTAATCTTTCTGCATTAAAAATAGTTCTGATGTTCTGTT GGTCTTTACATGATGTTCTGTTGGTCTTTACATGATGTTCTGTTGTATCAAGGGAAATCGTTATGCAATGCCTCTTTCAA GAATTGCGCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCAGGTATGTTTGTTTTCTGTCTGAGATGTATGAATGGGGTTG ATTTTATCTTTTGATGCTGACATAATGAATTTTTTTTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAA TCAGAGATTACCTTTTCAATGAGTTGGCTACCAAAACAGGCCAGCCTGTTGAGAAGGTCAGTTCACTCTACAATGAAATA CATGATAAATGAGTTTGTATAACTTCTGTTATCATTCACATCTCATGACTGTAAATTTGTTTGGCCCATCAACTTACTAT ATGACCCAAAAAATGAAGCTTTTGAAAAATATTAGCTTTTCTTTGGGAATGAAGTTTTTGAAAAATATTAGCTTTTCTTT GGGAATGAAGTCAAATTCAACCTTGACGTACTGCTCAACAAGGCTTTTTGTGTGTTTGTATTTCTGTTAGTGCACATTCT AATGCAATTTTGATGTGCTTTTGGTCAATCCAATTCCCTTGTGTCATTGGAGTGGACCTGTTTTTTATCAACTAACAAAG TAAACAGATTAAGCACTTATGGCAATAAGCGCTTACATAAGCTAACTTGAGAATTGAAATAAACTGATAATAGGTTATGG TTAAGCATAAGCTCTTATTCATAAGCTAATCAAAAACAACTTAAGGTAGACCATATGTTATTTACATTAGTTCTCCCGAG CACTTGCATAAGCACTTGTGTTATAAGCTCAAAGCTCTTCCAAACGGGGCCTAAGCCTCTTGCATTTATAAGTGTTTAGT TCCTCCCTTGCTTGGCGTTTATATTAAAATTTGAGAATATGAGCTTTATTAGCTTGAAAACTAATGTTTAATGCATCTGT TCAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGCACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTG TCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACGGAAGCACAGGGCTGGGTTAA
CDS sequence (LotjaGi4g1v0212300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCTATAGGAACTCCGAGAGTCCCATATAGGACACCTGGTGAAGGAACTTGGCAATGGGTTGATATATGGAATGC CCTTGTGCATTATTGGATGCAGTATCGAGAACGTGTTATCTTCATTGGACAAGAGATAGATGAAGAATTTAGTAATCAAA TATTGGCAACTATGCTGTATCTTGACAGCGTAGATAACGCCAAGAAGCTCTATATGTACATCAATGGTCCTGGTGGGGAT CTTACACCAACCATGGCTATCTATGACACCATGCAGAGCTTGCAAAGTCCTGTAGCCACCCATTGTGTTGGCTATGCTTA TAATCTTGCAGCATTTCTCCTTGCGGCTGGATTGAAGGGAAATCGTTATGCAATGCCTCTTTCAAGAATTGCGCTCCAAT CTCCAGCAGGAGCTGCTCGTGGTCAGGCTGATGACATCCAGAATGAAGCAAATGAACTTCTTAGAATCAGAGATTACCTT TTCAATGAGTTGGCTACCAAAACAGGCCAGCCTGTTGAGAAGATTACCCAAGACCTGAGCAGGATGAAACGTTTCAATGC ACAAGAGGCTCTTGAATATGGGCTCATTGATCGAATTGTCAGGCCACCCCGCATAAAGGCTGATGCACCTGTCAAGGACG GAAGCACAGGGCTGGGTTAA
Protein sequence (LotjaGi4g1v0212300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPIGTPRVPYRTPGEGTWQWVDIWNALVHYWMQYRERVIFIGQEIDEEFSNQILATMLYLDSVDNAKKLYMYINGPGGD LTPTMAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGLKGNRYAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDYL FNELATKTGQPVEKITQDLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPVKDGSTGLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 219 | 215 | 3.4E-119 | – | |
| PANTHER | 5 | 219 | 215 | 3.4E-119 | ||
| Hamap | 5 | 203 | 199 | 31.853 | ||
| Gene3D | 11 | 209 | 199 | 3.3E-57 | – | |
| CDD | 23 | 199 | 177 | 2.43268E-74 | ||
| PRINTS | 29 | 44 | 16 | 5.4E-29 | ||
| SUPERFAMILY | 30 | 203 | 174 | 6.64E-53 | ||
| Pfam | 33 | 201 | 169 | 4.8E-61 | ||
| PRINTS | 69 | 89 | 21 | 5.4E-29 | ||
| PRINTS | 100 | 117 | 18 | 5.4E-29 | ||
| PRINTS | 121 | 140 | 20 | 5.4E-29 | ||
| PRINTS | 178 | 197 | 20 | 5.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0212300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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