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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0214100 |
| Transcript ID | LotjaGi4g1v0214100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp|P62302|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr|I3T8Q2|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49743924..49746881) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAACGACGTAGTATCAGGTCAGATGCCTTGTCTTCTCTATATATATAACCTAAATCTCTAGGGTTTCAGAAATCGT CACCTGTGCACAACCCTAATCAGAACAGCGCGCAGCTCCAACAGCAACCATGGGTCGTATGCACAGTCGTGGGTTCGTAT CGATACTTCCAATCTCAATCTCAATCTCAATCTTCTTCTACCTTCAAATCTGTGTTCTCTAACGTTCATTTCTTACTTGA TTTCAGTAAGGGTATTTCCTCTTCTGCTTTGCCATACAAGAGAACTCCACCAAGCTGGCTCAAAATCGCTTCCCAAGATG TAAATTTCTCTCTACACCCACCATTTTATCTTCTGATTTGCTTACTCATTTAATATCATGTTTTTTTTCTGCTTGATTTG TAGGTTGAGGAGAATATCTGCAAGTTTGCGAAGAAGGGTTTGACCCCATCTCAGATCGGTGTCATTCTTAGGGATTCTCA TGGTATTGCTCAGGTTAGGAGTGTCACTGGAAGCAAGATCCTTCGTATCCTGAAAGCTCATGGTTTGTCCCTTTCTTTTG ATGTCTCAGAATATCTTTTGGTAAGTTTGTTGTTTTGGATTTTATGGTTTAAATAATGATGATTTTTGGGGTTGTTTTTT CAGGGCTTGCACCTGAGATTCCTGAGGATCTGTACCATTTGATCAAGAAAGCTGTCTCTATCCGTAAGCATTTGGAGAGG AACAGGAAGGATAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATCCACAGGCTTGCTCGCTACTACAAGAA GACCAAGAAGCTCCCACCAGTCTGGAAGTAGTAAGTACCCTAGCACCCCTACCCTTAAGTACTTCCCTCTTTTGGAAGAA GATTACTGATGGTTTGTTAGAGTTTTACTCAGTTTCGGTGTTGTGCTTGGAGTATTGTGGATCCATTTAAGGTCTTTTTT GTGTGCTGTGCAATTGTTAGGGTGTGTCTATATCCTATCTGTATGGTATGATTCAAGGGTTAAGGAATACACATTATGAC ATGAGTTGTTTTATCTAAAATTAATTTCTCCTGTCTGTATGGTATGATTCAAGAGTTAAGGAATACACATTGCAACATGA GTTGTTTTATTTACAATTGATTTCTACAAGACCACAACTATTTTTTCAAGTCTCTTTTTCTCTCTCCATCTTAGCATCCA TGTTATCACACTTTTCTCTTTCACCCCTTTCTATCACTCTTAATTGAGTGCGCGTCGGAAGCTAAGTGCTTTTCCACGTG AGGGGCATAAGGATTATGTGGGAAACTATTGGAAGTAGCTTTGGGGGTGTTTATAGTAGTGATTTTGAGAGATTTTACCA CGAATTCAAACATGCTATGAATAGAAAATAATTTTTGGTATTAATTTCTCTTTGGATCAGTTCATGACTTGATGTGCATT CTATATACTTCCTTAAATTAGTTTTTATATTACTATTTATAATGTGTTGATATGGTGGGAATCTTTCTTACTTAAACGAA ATTGAGTGGAGGCTAAGTGAGGGTTAGGGCCACTTTTTTCCCCTAACGTCTGATTGTTTTAGCTTCTATCTACTATTTTC TGAACACGTTTATTTTGTTTGGAGAAGCATGTTGCTCAAGTGTTTCTTTGAGATGAGTGACCAAAAGTAACCTCATGCAG CTCACCATTAGGTAGTGTCAGGGCACATGTCTATTTCTTTCTCTTTTGTTTCACCCATTTAACCAAAATGTATTGCTTAT GTGTCTTATAACATGTTCTATTCTACTTCTAAAGAACAGAACCAATATGCCTGTTATGTTGTGTTATGATCTGGCTATCA AATGCTACTAAAGTCTTTATATTACATAGTCTATTTGTTACCTGAAAATGGTCTTATGTCATAATTGAAAGTCATTATCA CAGACACGGTTTTTTAGAGTCCAGTTCAATAGGCAATGCATATGATAATGAGGTTGCATTGTTATCAGGGGTAATTTAAA TGCTATTAAAGCTTTCTTTGTTATGCATTCTTAGTTTAGTTGTGCATAGCCAGCATGATGTTCTCCAATCCTTTATGTTT GTAATTTTTCACGCCAACCTCCCCTCCTTTATTTGCTGTGATACCTCTATCTCTCATCCTATTAATGTTTTGTTTCATTT GCAGCGAATCAACCACTGCCAGCACTTTGGTTGCTTAGAGAATGTGTCAGATTTCATTTGCTTTTGTAGTTGCTTCTGGA TTAGCAATTTGAGGTTTCTTTTCAGCCTGGATAGGTGGTTGTACCTTAGTTTGCTATGAACCAGCTCTTAAAATTTGTCA ATGTTGTGTTCTTTTTCTTAGTTGTTGGACAACAGGCTGCTGTCATTTTAAGACTTTGCTGACTTCAGTTGTGTTTTAAT TTGAAGTTATATTGAGAAGTTTTGAAGGATCACATTTGACTGCATTTTTGCATCATTCCGTTTCTGAATTTTCAGAATTA AGACGACTCTATTTTGTTTGTGCTTGTGTTATGCACAACTGCAGAAGTGCCCAATGGCTCTTGATAATTGGATTTTGGAT AAAATGAAGTAAATTATTATATTTTGTTAGTCATATTACCAAGGTTATTAAAACCGGACCGGTGAGTAAACCGGTGAGGG TACCGTTTCACGGTTCTTTGGTTCAACCGTAATCAAACCGTGGTTCAACCGGTATTACCGCATTAATATTATTTAAGAAT ATATATGTAACATATAAGGTAATATTTAAAACAATTATCGAATAAATAAATAAAGGAAGTTCAAAACAATTACTCCCAAT GATTATTCGTAAGACATTTAAAAGGAAATTGAATGAAATTCAATACCATTAATATCCATTCAATGTAAAAAGGAATCATG CATTGTGTGCCACCAATTCAGCCCAACATTGTGTCACCAATTCAGCCCAATGATTGTACAACCAATTCAGCATTGGCC
CDS sequence (LotjaGi4g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCCTCTTCTGCTTTGCCATACAAGAGAACTCCACCAAGCTGGCTCAA AATCGCTTCCCAAGATGTTGAGGAGAATATCTGCAAGTTTGCGAAGAAGGGTTTGACCCCATCTCAGATCGGTGTCATTC TTAGGGATTCTCATGGTATTGCTCAGGTTAGGAGTGTCACTGGAAGCAAGATCCTTCGTATCCTGAAAGCTCATGGGCTT GCACCTGAGATTCCTGAGGATCTGTACCATTTGATCAAGAAAGCTGTCTCTATCCGTAAGCATTTGGAGAGGAACAGGAA GGATAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATCCACAGGCTTGCTCGCTACTACAAGAAGACCAAGA AGCTCCCACCAGTCTGGAAGTACGAATCAACCACTGCCAGCACTTTGGTTGCTTAG
Protein sequence (LotjaGi4g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRMHSRGKGISSSALPYKRTPPSWLKIASQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGL APEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 5.4E-92 | ||
| SMART | 1 | 60 | 60 | 8.4E-40 | ||
| Pfam | 1 | 60 | 60 | 1.1E-31 | ||
| Hamap | 3 | 149 | 147 | 32.002 | ||
| Gene3D | 35 | 82 | 48 | 1.1E-29 | – | |
| SUPERFAMILY | 66 | 142 | 77 | 7.36E-22 | ||
| CDD | 70 | 143 | 74 | 7.58871E-27 | ||
| SMART | 70 | 149 | 80 | 2.9E-15 | ||
| Pfam | 74 | 145 | 72 | 4.4E-15 | ||
| Gene3D | 83 | 151 | 69 | 4.3E-38 | – | |
| ProSitePatterns | 98 | 128 | 31 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi4g1v0214100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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