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IPR009068 is a uS15/NS1, RNA-binding domain superfamily.
<p>The RNA-binding domains of the small ribosomal subunit protein uS15, also known as ribosomal protein S15, and the influenza virus non-structural protein NS1 share the same structural fold, consisting of three helices in an irregular array. uS15 is one of 21 proteins in the small, bacterial 30S ribosomal subunit, and is required for assembly of the subunit through its binding to 16S rRNA [[cite:PUB00013311]]. The multifunctional glutamyl-prolyl-tRNA synthase (EPRS) contains three tandem repeats linking two catalytic domains, all three of which contribute to RNA-binding; the second repeated element bears structural resemblance to the uS15/NS1 RNA-binding domain [[cite:PUB00013215]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | 40S ribosomal protein S13 [Glycine max] gi|351722010|ref|NP_001237229.1| | 13 | ||
| – | PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1| | 32 | ||
| – | 30S ribosomal protein S15 [Medicago truncatula] gi|357468029|ref|XP_003604299.1| | 15 | ||
| – | 30S ribosomal protein S15 [Medicago truncatula] gi|357468029|ref|XP_003604299.1| | 10 | ||
| – | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| | 18 | ||
| – | 40S ribosomal protein S13 [Glycine max] gi|351722010|ref|NP_001237229.1| | 13 | ||
| – | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum] gi|502138744|ref|XP_004503515.1| | 28 | ||
| – | Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 | 35 | ||
| – | 30S ribosomal protein S15; TAIR: AT1G80620.1 S15/NS1, RNA-binding protein; Swiss-Prot: sp|B7IFB5|RS15_THEAB 30S ribosomal protein S15; TrEMBL-Plants: tr|M5WYW8|M5WYW8_PRUPE Uncharacterized protein; Found in the gene: LotjaGi3g1v0352400 | 15 | ||
| – | 40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp|P62302|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr|I3T8Q2|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0434000 | 15 | ||
| – | 40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp|P62302|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr|I3T8Q2|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0434000 | 15 | ||
| – | 40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp|P62302|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr|I3T8Q2|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214100 | 15 | ||
| – | 40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp|P62302|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr|I3T8Q2|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214100 | 15 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00353 | CDD | 1 | 7.69 |