Domain Predictions — View

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SSF47060

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0214329.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13 [Glycine max] gi\|351722010\|ref\|NP_001237229.1\|	Domains IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	13
Lj1g3v3328940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi\|502127199\|ref\|XP_004499600.1\|	Domains G3DSA:1.10.287.10 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR000738 IPR002314 IPR002315 IPR004154 IPR006195 IPR009068 IPR027031 IPR033731 NON_CYTOPLASMIC_DOMAIN PF00458 PF00587 PF03129 PR01043 PS50862 PS51185 PTHR10745 PTHR10745:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00991 SSF47060 SSF52954 SSF55681 SignalP-TM_GRAM_POSITIVE TIGR00389 cd00774 cd00858	32
Lj3g3v2171540.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	30S ribosomal protein S15 [Medicago truncatula] gi\|357468029\|ref\|XP_003604299.1\|	Domains Coil G3DSA:1.10.287.10 IPR000589 IPR005290 IPR009068 MF_01343_B PD157043 PF00312 PTHR23321 PTHR23321:SF26 SM01387 SSF47060 TIGR00952 cd00353 mobidb-lite	15
Lj3g3v2171540.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	30S ribosomal protein S15 [Medicago truncatula] gi\|357468029\|ref\|XP_003604299.1\|	Domains Coil G3DSA:1.10.287.10 IPR000589 IPR009068 PD157043 PF00312 PTHR23321 PTHR23321:SF26 SSF47060 mobidb-lite	10
Lj3g3v2736240.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13 [Glycine max] gi\|351722010\|ref\|NP_001237229.1\|	Domains IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	13
LotjaGi1g1v0551900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp\|O23627\|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A072U6L4\|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900	Domains G3DSA:1.10.287.10 G3DSA:1.10.30.30 G3DSA:1.20.1430.20 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR000738 IPR002314 IPR002315 IPR004154 IPR006195 IPR009068 IPR027031 IPR033731 IPR036621 NON_CYTOPLASMIC_DOMAIN PF00458 PF00587 PF03129 PR01043 PS50862 PS51185 PTHR10745 PTHR10745:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00991 SSF47060 SSF52954 SSF55681 SignalP-TM TIGR00389 cd00774 cd00858	35
LotjaGi3g1v0352400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	30S ribosomal protein S15; TAIR: AT1G80620.1 S15/NS1, RNA-binding protein; Swiss-Prot: sp\|B7IFB5\|RS15_THEAB 30S ribosomal protein S15; TrEMBL-Plants: tr\|M5WYW8\|M5WYW8_PRUPE Uncharacterized protein; Found in the gene: LotjaGi3g1v0352400	Domains Coil G3DSA:1.10.287.10 IPR000589 IPR005290 IPR009068 MF_01343_B PF00312 PTHR47546 PTHR47546:SF3 SM01387 SSF47060 SignalP-TM TIGR00952 cd00353 mobidb-lite	15
LotjaGi3g1v0434000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp\|P62302\|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr\|I3T8Q2\|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0434000	Domains G3DSA:1.10.287.10 G3DSA:1.10.8.1030 IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	15
LotjaGi3g1v0434000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp\|P62302\|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr\|I3T8Q2\|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0434000	Domains G3DSA:1.10.287.10 G3DSA:1.10.8.1030 IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	15
LotjaGi4g1v0214100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp\|P62302\|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr\|I3T8Q2\|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214100	Domains G3DSA:1.10.287.10 G3DSA:1.10.8.1030 IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	15
LotjaGi4g1v0214100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	40S ribosomal protein S13; TAIR: AT4G00100.1 ribosomal protein S13A; Swiss-Prot: sp\|P62302\|RS13_SOYBN 40S ribosomal protein S13; TrEMBL-Plants: tr\|I3T8Q2\|I3T8Q2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214100	Domains G3DSA:1.10.287.10 G3DSA:1.10.8.1030 IPR000589 IPR009068 IPR012606 IPR023029 MF_01343_A PF00312 PF08069 PS00362 PTHR11885 SM01386 SM01387 SSF47060 cd00353	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00353	CDD	1	9.09