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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0222400 |
| Transcript ID | LotjaGi4g1v0222400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWI/SNF complex component SNF12 like; TAIR: AT5G14170.1 SWIB/MDM2 domain superfamily protein; Swiss-Prot: sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog; TrEMBL-Plants: tr|A0A1J7HXV2|A0A1J7HXV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0222400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52745968..52750013) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTAAAGTGTATAACTGTATATACATTAAAGAAATTAAAGAAAAAAAAGAAATTGATAAGCAAAGCAAAGGGCAGAG AGGTTTAAAGAATAGAAGATGAAGAAAGTGTAAGAGAAAGGGTATAGCAACAGCACAACGGAAGTGATGAAGTGAAGTCA TTGAATCGAATCGAATCGAATCGAACCCTAACTGTAAGAATGCTTTCTTCCTATACTCTCTTTTCTGCGTAATCATCGTT TTCCAATTAGGGTTTTCAATTTTCCATTCTTTACATTTTCCGAACACATTTAGATTCAAATTTTGTTGTTTTTCCACAAC CCAGGTTCTCTAAGAAGCAATTTTGGGTCATACCCACGATTCTCTGAACAATGAACAACAACAATCCAGCCAAGAATCCA GTGACGCCGTCGTTTCAGCTTCTCACCCAGTCTCAGCCTCAAATCCAAGGTGCTGTTCAGTTCCCTGGCCACTTTCAGCT TTCACAACCCCAAACCCATTTGATTGCACAACAAGCACAATATGCACAACCTCGTCTTCACCCTCAAATGCCGCCGCAGC AACAGCTGCAGTATCAGCAACAGCAGCAGCAGCAGCAACAGAAGCAACAACAGCATCAGTTACAGCAGCAGCAGAAGCCT GTTGGTCTATTGCATAACAGTGGCAACACCCATGTGGGCACTGCTGCTCCTGGAACTGCGAGTGCGAAGCGCGCGAATCA GAAGCCGCCTTCTCGCGGGCCTCAAGGTTCACCCAGTGCTAACCAATCGTCGGCATTTAAGACCATGGAGTTGACTCCGG CTCCTCTGAGGAGGAAGAGAAGCTACCCGGAGAAGCAAATTCCGGAAAGGGTGGCTAAGCTTGTGCCTGAGTGTGCTGTT TATACGAGGTTGCGTGAGCTCGAGGCGCAGATAGATGCTGCTTTGTTTAGGAAAAAGATTGATGTGCAGGAGGCTGTTAG AAACCCTACCTGTGTTCAGAAAACTATGCGTGTTTATGTGTATAATACCTTTTCAAATCAGAATAAAATGGATTCCGGGA AGAATGATGCAGAGGAGCCTTCTTGGTCCCTCAAGATAACGGGAAGGTTATTGGAAGATGGTAAGGATCCTGTGGTGGCA GGAGTTTCACAGAGGGAAAGTCCTCCGTGCCCTAAGTTTTCGGCTTTCTTCAAGAAAATTACCATATACTTGGATCAGGG CTTTTACCCAGATAATCATGTCATTGTTTGGGAAAGTGGCCGTTCGCCTAATCAACGAGATGGTTTTGAGGTGAAGAGGA AAGGAGATAAAGAGTTCACTGCAGTGATCAGACTAATGATGAATTATTCACCTGAGAAGTTCATGGTTTCGACACAACTG TCTAAAGTTTTGGGGATTGAGTTTGATACCCGCCCCAGGATAATAGCTGCACTTTGGCATTATGTGAAGTCCAAGAAGCT ACAGAGCCCAAATGACCCTTCATTCTTCATGTGTGATGCTCCTCTTCAAAGGGTGTTCGGGGAAGAGAAAATGAAATTCT CCATGGCTTCACAAAAGATATCACAACATTTGTCTCTACCACAGCCTATACACCTGGAGCATAAACTCAAGTTTTCTGGA ACTTGTCCCGTCGGAACTGCATGTTACGATATACAGGTTGATGTACCTCTTCCACTAGAGAAAGATATGTCTGCATTCTT GACAAGCATTGAGAGTCACAAAGAGATTGATAATTTTGATGAAGTGATTTGTTCTTCCATAAAGAAGATCCAAGGGCATC TTAGGAGGCGGGCATTCTTTCTTGGCTTTAGTCAGTCACCTGCAGAGTTTATAAATTCTTTGATCACCTCTCAGAGCAAG GATCTAAAGGTTGTTGCTGGTGATGCCAGCCATAGTGCTGATAATGAACGACGTTCTGAATTCTACAACCAATCTTGGTA AGCATATACCTAATCTCTTGTGTTGTGAAGCATGCATGAACAGTATTCAATTTACTTCTTGGTTGGCTATGACTTATGTT GGTATTTATCTTCTAGAATTAAGAGTTGAAAAGAGTAGTAATACTGTGTTAGACAATAGACACTAATTTTAGACATGATG GTACTTCAAGGAGCTCTTAAATACACTATATTTCATACTGTATTGTGGCGTATGTCTGTGTCCCATGTTCTTAGATGGCA ACTAATAGGAAATGGACCAGCCACCAAAGAGATCAAGGGTGAATTGACCCTTGACTTGATTCAAAAGTACATCTTAATTT TAATCTACTAGATTTAAAAGTATACATCATTGCTTTTTTCTTATAGAGACAAACTCATTTTAGAGTAACCTTTTCCACAT TTTACTACCATTTTATGGCTTGTACAGAGTTTTGATTGTGCTCTGAAATGCTGCATACATTATTCAGAGACTAAAAAGTT TTGTTTAAGTCTGATTTGGGGCATAAAAGCAGTGAGGGATTTAGTCTAGATGTAATATTAAAGCAACGGAGATTCAGGAC CCATTTTTAGGTGTACCTTCTTTTAAGGAAAAATAATTTCCTTTTCTTTTTGTTTTTCACATTAAAAGACATGTCTAATT TATTATTTTTTTTAACAATAAGATACATCTTTACTTACAGAAGCAACTAATCAATTTAGAGATCTTAAAAAAATGGAGGA GCTTTTTATATATTGTATTACCATCTTAGGACTTTTACAGAGTTCTGTTTGTGCTGTTAAATGATGCATGCATGCATTTC AAGTGACTTCAAAACCGCAAAATCTTAAGTCTGACTTGGGGCATAAGGCAGTAAGGGATTTAATCTAGATGTAATATAAT AGGATTGGAGATTTAGGACCCGGTTGTTTGCGCATTTTTATGAAGAAATGTTTTATTAATTGAAAATGTTTTAAAAATTG TAATAATTAGATAAAATTTTGGAATAAAGTTAGTACTTTTCTTAGAAGTGAGAAAAAAGACTAATAAAAGTGATTTCATA AAAGGCATTTTTTCCAAGTTTATCGGAAGGAAATAATGAGGAGAGCCTTGGGGTTTGTTTGAGTTAAATGATTTTCGGTA GGGTTAGTTTTGAAAGAATGTGTTTTGTTAAAGTGATTTTTGTGTTTGGTCTGTTATTGTAAAAGTAAGTTTTAAGAATT TTTGTTTGGATGGTATGGTAGAATTCTTTTGTAAGAATAGTGAACTTTTATTCATTTGAGTAGGATGTCCTGCATCTTGT GTTCATTTGAGGTAATATAGGCCATCCAATGTATTAGAATAGAGATTTAATGGAAAGCTATTTCTGATCAGTTTTTGTTC TTTTATGAATATTTCCAGGGTTGAGGATGCTATCATTCGCTACCTGAGCCGGAAAACTGCTCGGAGTGATGCTCCTGGAA ACATCTGAGGAAAAAGTGTACAATAGATTGTTTTTGTTTCTTTCTTAGGATGGGGGAGGTGGTTAATTTTTTTGGCATCA CTCGAATGTCTTACTCCAACTTTGCTAATTTTTTGTTCCACCCTTCAATTTTTCGTAGTGAAGTACACGAGTATATGGGC TCGAGAATTCTGATAGGGCTCATTTTTGAAGTTCCTAAATCATGTTGTATCTGCTAATTCTCATCGCCCATTGCCATATT CACTATGGTAGCTTGAGCCTAGAACAATGAGCTAGCTAACATCATGCGTAGCATCAATTACGCTATTTCTTGGTACATTT TTTTGGGTTAGAACTCTATTTTATCCTTTATTCCAGGTTGGTAGAATATTTCATGTTGCTAAAAATAGTGAATTGTCACA TGAAATTCGTGAAGGATTAGACCAATGTCGCCATTGTACTTTATAAAACTAATTTTTACTGTAAATATATTACACTAATG CTTATTATTACGAATATCATTCCAACGAAACGAAACGAATGATTATAGTTGGATATCCCCTGTATGATAAGGAATACCTT TCTGTTTTTCTTTTCTTCAAATAATCACTATAAAGTTGACATGTGTTCTTACCTATTGTACGTGGTTTGTTTCGGTTGAA ATAGTATTGCTCCTTTTCCATGAACTCCCACTTCCGCTAGCTACTG
CDS sequence (LotjaGi4g1v0222400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAACAACAATCCAGCCAAGAATCCAGTGACGCCGTCGTTTCAGCTTCTCACCCAGTCTCAGCCTCAAATCCAAGG TGCTGTTCAGTTCCCTGGCCACTTTCAGCTTTCACAACCCCAAACCCATTTGATTGCACAACAAGCACAATATGCACAAC CTCGTCTTCACCCTCAAATGCCGCCGCAGCAACAGCTGCAGTATCAGCAACAGCAGCAGCAGCAGCAACAGAAGCAACAA CAGCATCAGTTACAGCAGCAGCAGAAGCCTGTTGGTCTATTGCATAACAGTGGCAACACCCATGTGGGCACTGCTGCTCC TGGAACTGCGAGTGCGAAGCGCGCGAATCAGAAGCCGCCTTCTCGCGGGCCTCAAGGTTCACCCAGTGCTAACCAATCGT CGGCATTTAAGACCATGGAGTTGACTCCGGCTCCTCTGAGGAGGAAGAGAAGCTACCCGGAGAAGCAAATTCCGGAAAGG GTGGCTAAGCTTGTGCCTGAGTGTGCTGTTTATACGAGGTTGCGTGAGCTCGAGGCGCAGATAGATGCTGCTTTGTTTAG GAAAAAGATTGATGTGCAGGAGGCTGTTAGAAACCCTACCTGTGTTCAGAAAACTATGCGTGTTTATGTGTATAATACCT TTTCAAATCAGAATAAAATGGATTCCGGGAAGAATGATGCAGAGGAGCCTTCTTGGTCCCTCAAGATAACGGGAAGGTTA TTGGAAGATGGTAAGGATCCTGTGGTGGCAGGAGTTTCACAGAGGGAAAGTCCTCCGTGCCCTAAGTTTTCGGCTTTCTT CAAGAAAATTACCATATACTTGGATCAGGGCTTTTACCCAGATAATCATGTCATTGTTTGGGAAAGTGGCCGTTCGCCTA ATCAACGAGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAAGAGTTCACTGCAGTGATCAGACTAATGATGAATTATTCA CCTGAGAAGTTCATGGTTTCGACACAACTGTCTAAAGTTTTGGGGATTGAGTTTGATACCCGCCCCAGGATAATAGCTGC ACTTTGGCATTATGTGAAGTCCAAGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATGTGTGATGCTCCTCTTCAAA GGGTGTTCGGGGAAGAGAAAATGAAATTCTCCATGGCTTCACAAAAGATATCACAACATTTGTCTCTACCACAGCCTATA CACCTGGAGCATAAACTCAAGTTTTCTGGAACTTGTCCCGTCGGAACTGCATGTTACGATATACAGGTTGATGTACCTCT TCCACTAGAGAAAGATATGTCTGCATTCTTGACAAGCATTGAGAGTCACAAAGAGATTGATAATTTTGATGAAGTGATTT GTTCTTCCATAAAGAAGATCCAAGGGCATCTTAGGAGGCGGGCATTCTTTCTTGGCTTTAGTCAGTCACCTGCAGAGTTT ATAAATTCTTTGATCACCTCTCAGAGCAAGGATCTAAAGGTTGTTGCTGGTGATGCCAGCCATAGTGCTGATAATGAACG ACGTTCTGAATTCTACAACCAATCTTGGGTTGAGGATGCTATCATTCGCTACCTGAGCCGGAAAACTGCTCGGAGTGATG CTCCTGGAAACATCTGA
Protein sequence (LotjaGi4g1v0222400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNNNPAKNPVTPSFQLLTQSQPQIQGAVQFPGHFQLSQPQTHLIAQQAQYAQPRLHPQMPPQQQLQYQQQQQQQQQKQQ QHQLQQQQKPVGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKRSYPEKQIPER VAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVYVYNTFSNQNKMDSGKNDAEEPSWSLKITGRL LEDGKDPVVAGVSQRESPPCPKFSAFFKKITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLMMNYS PEKFMVSTQLSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQKISQHLSLPQPI HLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNFDEVICSSIKKIQGHLRRRAFFLGFSQSPAEF INSLITSQSKDLKVVAGDASHSADNERRSEFYNQSWVEDAIIRYLSRKTARSDAPGNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 47 | 139 | 93 | - | – | |
| MobiDBLite | 47 | 154 | 108 | - | – | |
| Coils | 68 | 88 | 21 | - | – | |
| PANTHER | 73 | 537 | 465 | 2.5E-251 | – | |
| PANTHER | 73 | 537 | 465 | 2.5E-251 | – | |
| SUPERFAMILY | 313 | 404 | 92 | 3.49E-23 | ||
| Gene3D | 316 | 401 | 86 | 2.4E-22 | ||
| SMART | 320 | 399 | 80 | 2.0E-14 | ||
| Pfam | 323 | 394 | 72 | 2.4E-20 | ||
| CDD | 326 | 394 | 69 | 9.52282E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0222400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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