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LotjaGi4g1v0223500.2

Overview

Field Value
Gene ID LotjaGi4g1v0223500
Transcript ID LotjaGi4g1v0223500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Malate synthase; TAIR: AT5G03860.1 malate synthase; Swiss-Prot: sp|P45458|MASY_SOYBN Malate synthase, glyoxysomal; TrEMBL-Plants: tr|I1MUM7|I1MUM7_SOYBN Malate synthase; Found in the gene: LotjaGi4g1v0223500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:52872793..52876563) extracted from Lotus japonicus Gifu genome v1.2.

CATTTTCTTCACAATGTTTTAAAAATATAATTTTTTATAATCACAAACGGACATGATATCAACTAAAAATAAAAAACAGA GAAAACCAAAAACATTATCAGAACATTCAATTCAACTATCCCACTTGTTCTGTATAAATTCTAATATTTTTTTCCCCTAT AAGCTATATAAATTGTACTTAATCCTTGCTCCCAATTCCCATTCCATTTCCACACCACTATTCCAGCAAGAAAGAAAAGC CATGGACCTGGGTTATGGCTATCCCCCACAAGCAGTGGCAGGGAAAAAGATCGACTCTAGCTATGATGTGCCAGAAGGAG TGGACATTAGGGGAAGATACGATGCAGAGTTTGCTAAAATTCTCACAAAAGATGCTTTGAAATTCGTTGCTGACCTGCAA CGTGAGTTCAGAAACCACATCAAGTATGCGCTTGAGTGCAGAAAAGAAGCAAAGAGGAGGTACAATGAAGGGGCTGTACC AGGGTTTGATCCGGCCACAAGGTGCATAAGAGAAGGGGAGTGGCTGTGTGCACCAGTTCCAGCAGCTGTTTGTGATAGGA AAGTGGAGATCACTGGCCCTGTAGAGAGAAAGATGGTCATCAATGCTCTTAACTCTGGAGCTAAAGTCTTCATGGTTAGT ACTACTAAACTAAAACACTTCTATATATGCTTGTGTTGTGTGCATGTGTTTTCAGTTTTCTTGTTAAACAAGCTTTTCAT GGACTAATTCTTGCATCCCTTATAGCATTAATATTAACATAATTGACAAAGACTGACAGATTGTTATTTTTATAATATAT TTGGATAAACTTCATTTTTCCCATAATCAATTATGGCACCAAGAAGCTATTCACATAAACTTTTCTTCATAATTAATTTT GACTTAAGAATAAGTTGTAGAGAGATTTCCAAATCAATTCTAGCACTCAAAAACTACTCGCATAGACTTCTCTCCATGAT TGATTTTGGCTTTATAATCAATTGTAAAGAGATTTCCAAAACAATTCTAACACTTAGAAGGTACTCATATGAGCTTATCT TAATAATTGATTTTAGGTTTAGAATCAATTGTAAAGAGATTTCCAGACATGTACTTGGTGCCTGTGTGGAAATTTTTCTA CAACTGATTTTGAAGGCAAAATCAATTTCGGGAAGAAACTTTGTAAGTAGCTTCTAATGGAAACATGCTAATAATAATAA ATATATCACAAGTTTGTTTAATTTGATCAGTTCTAAAACTAAAACACTGATTTTTCTTTCTTAGGCTGATTTTGAAGATG CACTCTCTCCCAGCTGGGAGAATCTTATGAGAGGCCAAGTGAACTTGAAGGATGCTGTGTCTGGGACCATAAGTTTCCAT GACAAGAACAGAAACAGAGTTTACAAGCTCAATGATCAGATAGCTAAACTATTTGTGAGGCCAAGAGGTTGGCACTTACC TGAGGCTCATATTCTGATCGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTACTTCTACCACAATCACT CAACCTTCAGGCGTACTCAAGGTGCTGGGTTTGGCCCTTTCTTCTATCTCCCCAAAATGGAGCATTCAAGGTGAGCACTA TGTTCTCTTGTTTTGGGCTCTCATGTCTCTCCAACACATATGCATTCATAAATCAACTTGGTCCCTGAAAGTTTTTGGCC GCGCTGGCAAATTAGGCTGTGTTGGCGAATTAGACCCTGAAAGAAGGAAATATATTCCCAAGTCTCTGAATATGTAAAAC ATCAATCAAGTTAAAGAACTAATTTGACATATGTTTTACACATTAAGGTACTTTCGAACACATTTATTTTATTTTAGGAA CTAAGTTGTCGGCGCCAAAAGTTTTCAAGCGTTAAATTGACCGTTCACTCCGCAAAAGAAAATTGGTTTAATAGATTTCA AGCTTTTAGTAAAGGTTAGAAAATTGGTTTTGTGGTCATATGTATAACTTCATTTGTGATTGACAGGGAAGCTAAGATAT GGAACAATGTGTTTGAGAGGGCAGAGAAGATGGCACGCATTGAAAGAGGAAGCATTAGGGCCACTGTCCTAATTGAAACA CTTCCTGCTGTGTTTCAAATGGATGAAATTCTGTATGAGCTCAGGGAGCACTCTGTGGGTCTCAACTGTGGGCGCTGGGA TTACATTTTCAGTTATGTTAAGACCTTCCAGGCTCACCCAGATCGCTTGCTGCCAGATAGAGTCCTGGTTGGCATGACTC AACACTTCATGAGGAGCTACTCTGATCTTCTCATAAGAACATGCCATAGGCGCGGCGTGCACGCTATGGGAGGAATGGTA AGTGTTGTAAATTCAATTGAGTCTAGAAATTACTTCGAAATTGATAAGTTAATGAAAATATAATATATAAGACCCACATA CTGAGTGTCTTAAAGTTTTGAGTGGGGATCTGGTATCTTGTTTAGCTACTTGTATTGAAGTCTTCATATCAATGTGGAGA TCAAGAGAAGCTATCCACACATACTTTCAGCCATAACCATGGTCTCACTATGGGCTTTGATATTACTTGTTAATTAGTTT TCTTACTTCTTAGCAAAGTGGGTATATATATATATATAGACTATAAAATCTTGAATGCTAAATGAACTGTGATAGATAGA AAAATTAGAAAGTGATCAGAGTATACATGGCCTACATTTAAATCTATCAGATGAACTTAATTGAGTGTATGCTTGGATTT AACTATGTGTTTGGATTAGCGTTTCTCACAATGGTAAAAATTGATTATAGGAAGAGTAAATTGAAAGTTGAGGGATTCAT GTTTGGATACATATGAAAAAATGATTTTTGTTGGGTAATGTTGTGAAACTAAATTGTAAAATCTCACAATTGATTAAACT CACCACATAATGATTTCCAAACATCAATATTTTCATCTAGAATTCAGTTTGAGGTTTCCCAACGGAAAACCCAACACACT TACATTAATCTAAGTATTTTTTTCCAATCAATTGTGAGGGGTAGATTTCATTAATAGTACTTTTAACTATTACTCACCAA AATCTAAACACACACTAAATGAGGAAAAAATCATAGATGCTTAATAATGTTGCTGAGTTCAAATTGTTCAACAGGCAGCA CAGATTCCAATCAGAGATGATCCAGCAGCTAATGAGGCAGCAGTGGAACTGGTAAGGAAGGACAAACTCAGAGAAGTGAA GGCAGGGCATGATGGAACCTGGGCTGCACACCCTGGCCTAATCCCAACTTGCATGGAGGTTTTCAACTCCAACATGGGCA CTGCTCCCAATCAGATAAAAACAATGAAACGTGATGATGCTGCAAGCATAACTGAAGAAGACCTCTTGCAGATACCGAGA GGAGCCCGCACGATGGACGGTCTTCGCCTGAACACACGGGTCGGGATACAGTATGTCGCGGCGTGGCTAACCGGAGCTGG CTCAGTGCCTCTCTACAACCTCATGGAGGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGATCAAGT ATGGAGTTGAGCTGAATGGGGATGGGGTTGGAGTGAAGGTGAATAAAGAGCTCTTTGGCAGAGTGGTTGAAGAGGAGATG GCTAGGATTGAAAGAGAGGTGGGCAAAGAGAAGTTCAAGAAGGGAATGTACAAGGAAGCTTGCAAGATTTTTACAAGGCA ATGCACATCCCTTGCACTAGATGATTTTCTCACTCTGGATGCCTATAATTCTATAGTCATGCATCATCCCAGGGAACAGT CAAAGCTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0223500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACCTGGGTTATGGCTATCCCCCACAAGCAGTGGCAGGGAAAAAGATCGACTCTAGCTATGATGTGCCAGAAGGAGT GGACATTAGGGGAAGATACGATGCAGAGTTTGCTAAAATTCTCACAAAAGATGCTTTGAAATTCGTTGCTGACCTGCAAC GTGAGTTCAGAAACCACATCAAGTATGCGCTTGAGTGCAGAAAAGAAGCAAAGAGGAGGTACAATGAAGGGGCTGTACCA GGGTTTGATCCGGCCACAAGGTGCATAAGAGAAGGGGAGTGGCTGTGTGCACCAGTTCCAGCAGCTGTTTGTGATAGGAA AGTGGAGATCACTGGCCCTGTAGAGAGAAAGATGGTCATCAATGCTCTTAACTCTGGAGCTAAAGTCTTCATGGCTGATT TTGAAGATGCACTCTCTCCCAGCTGGGAGAATCTTATGAGAGGCCAAGTGAACTTGAAGGATGCTGTGTCTGGGACCATA AGTTTCCATGACAAGAACAGAAACAGAGTTTACAAGCTCAATGATCAGATAGCTAAACTATTTGTGAGGCCAAGAGGTTG GCACTTACCTGAGGCTCATATTCTGATCGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTACTTCTACC ACAATCACTCAACCTTCAGGCGTACTCAAGGTGCTGGGTTTGGCCCTTTCTTCTATCTCCCCAAAATGGAGCATTCAAGG GAAGCTAAGATATGGAACAATGTGTTTGAGAGGGCAGAGAAGATGGCACGCATTGAAAGAGGAAGCATTAGGGCCACTGT CCTAATTGAAACACTTCCTGCTGTGTTTCAAATGGATGAAATTCTGTATGAGCTCAGGGAGCACTCTGTGGGTCTCAACT GTGGGCGCTGGGATTACATTTTCAGTTATGTTAAGACCTTCCAGGCTCACCCAGATCGCTTGCTGCCAGATAGAGTCCTG GTTGGCATGACTCAACACTTCATGAGGAGCTACTCTGATCTTCTCATAAGAACATGCCATAGGCGCGGCGTGCACGCTAT GGGAGGAATGGCAGCACAGATTCCAATCAGAGATGATCCAGCAGCTAATGAGGCAGCAGTGGAACTGGTAAGGAAGGACA AACTCAGAGAAGTGAAGGCAGGGCATGATGGAACCTGGGCTGCACACCCTGGCCTAATCCCAACTTGCATGGAGGTTTTC AACTCCAACATGGGCACTGCTCCCAATCAGATAAAAACAATGAAACGTGATGATGCTGCAAGCATAACTGAAGAAGACCT CTTGCAGATACCGAGAGGAGCCCGCACGATGGACGGTCTTCGCCTGAACACACGGGTCGGGATACAGTATGTCGCGGCGT GGCTAACCGGAGCTGGCTCAGTGCCTCTCTACAACCTCATGGAGGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAAC TGGCAGTGGATCAAGTATGGAGTTGAGCTGAATGGGGATGGGGTTGGAGTGAAGGTGAATAAAGAGCTCTTTGGCAGAGT GGTTGAAGAGGAGATGGCTAGGATTGAAAGAGAGGTGGGCAAAGAGAAGTTCAAGAAGGGAATGTACAAGGAAGCTTGCA AGATTTTTACAAGGCAATGCACATCCCTTGCACTAGATGATTTTCTCACTCTGGATGCCTATAATTCTATAGTCATGCAT CATCCCAGGGAACAGTCAAAGCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0223500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLGYGYPPQAVAGKKIDSSYDVPEGVDIRGRYDAEFAKILTKDALKFVADLQREFRNHIKYALECRKEAKRRYNEGAVP GFDPATRCIREGEWLCAPVPAAVCDRKVEITGPVERKMVINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVSGTI SFHDKNRNRVYKLNDQIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNHSTFRRTQGAGFGPFFYLPKMEHSR EAKIWNNVFERAEKMARIERGSIRATVLIETLPAVFQMDEILYELREHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVL VGMTQHFMRSYSDLLIRTCHRRGVHAMGGMAAQIPIRDDPAANEAAVELVRKDKLREVKAGHDGTWAAHPGLIPTCMEVF NSNMGTAPNQIKTMKRDDAASITEEDLLQIPRGARTMDGLRLNTRVGIQYVAAWLTGAGSVPLYNLMEDAATAEISRVQN WQWIKYGVELNGDGVGVKVNKELFGRVVEEEMARIEREVGKEKFKKGMYKEACKIFTRQCTSLALDDFLTLDAYNSIVMH HPREQSKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001363
18 559 542 2.6E-242
IPR006252
SUPERFAMILY
SSF51645
19 558 540 1.01E-186
IPR011076
PANTHER
PTHR42902:SF1
20 563 544 7.8E-292 –
PANTHER
PTHR42902
20 563 544 7.8E-292
IPR006252
Gene3D
G3DSA:3.20.20.360
23 433 411 1.1E-185 –
Pfam
PF01274
28 558 531 2.8E-222
IPR001465
CDD
cd00727
40 558 519 0.0
IPR006252
TIGRFAM
TIGR01344
40 557 518 8.7E-223
IPR006252
ProSitePatterns
PS00510
286 301 16 -
IPR019830
Gene3D
G3DSA:1.20.1220.12
434 558 125 2.3E-43 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004474
Molecular function Malate synthase activity Catalysis of the reaction: acetyl-CoA + glyoxylate + H(2)O = (S)-malate + CoA + H(+).
Subterm of
GO:0006097
Biological process Glyoxylate cycle A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0223500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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