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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0224700 |
| Transcript ID | LotjaGi4g1v0224700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53049099..53053556) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGAACCTCAACTCCAAAAAGAAGGTTAAGCAAATTTGAAGATGTTCAAATGGTGACTTATTGGAAGGGCAATGTCG GTCAAAACAAGGCCACTGAGCGTCTCGAAGGCTCAATAGACCTTTTCTGGTCAACACCCCCAACCCAAGAAGAAGCTTCC ATAGCATTCTTTTTGTGCCGTGGCGACCCCATTTATTCTCCTCCATTTTCCTTTCTCTCCAAGCACCACTCCTTCTCATT TCCTCTAAACGTAAGGACCATAATCCCTCCAAGTTCGAGAAATGTTGCGCTACCATATACTTGATTCAACCCCCACTTTC CAAGACTCCCTCAAGGCACTCGAGGCTGACATTCAACATGCCAATCTGCTGTGAGTTCTCTCCCTCTCTCTTGTATTTTC TTGCTTTGACCTTAATTGGGAATACGGGTTCATGGTGAACACAATGTAATTAGCATTTTAAGGTAGTAATAGTATAGCTA GGATTCAATATACAGGTTATAGTGACCAATGTGTGTAAGTATTATGTTTGTGTTTAGTGTATATTTGGTTTTACCAAGTA ACCCCGGCTGACAGCCATGAGACTAATCCCATCGAGGCTCTGAGATCAAGTAAATGAATAGGCCTCTCCCAACAAATTAT TCTCCATACACATTGTTGAGGGATCGAACCCTTGACTAAATGTTTAAGGAGTCCAGCTATCTATAACTGTGTTGGACCTT GTTTGTTGTGTTTAGTGTATATTAAAAGTGGAACAAAGTATAACAGATAACATGGGATAAGATAATACAAAAAAAGTAAC ACATTTTTGGTTCCACTAAAGAGAATATACCAGAAGACTGTCAAATGTTAGTGTGTATTTAAATCCTGTTTATAGGTCAC CTTTACAATATGAATTTTCCAAATAGTAGGTTGTTTTAAACTTTTTATCCTTTTCCTCCTCTGCCATTTGCATTGCCCAC TTTTTTTTATCCTCTAACAGATTAAGGATATATAATTTTCCTTTGTTACTTGTTTGAAACATGTACCTAGCCTCAGTTAA AGTAATTCCTCCAAGATCAGATGATTCTACTATCTTTACTTCTAGTTGAGTGCTTGTCGTTATCTTTATAATTTCCCTTT CTTATGGTAAAGCCTAGGGACCAGTATCATGCCTCTTACTCATTTCTTACACCAACAAGGAAGAATACTTCTGTAACCCT GTCACTCTATGATTGTTTATTTAATCCTTCCAAGTTAGTTTACTTGCATATAATGGTCCTTGGAATCAAAGGTATAGCCT GAGATTTGAGATGCATTTATTATTTCTTATGATGGTAAAAATGCATTGTTTCAGATATAATATATTGGTTCAAATTCGAA ACTGTATGCAGGGCTGCTTCTATTTCAAGGGGCAATGGAAGTGCTTGCCTTCAAATGAAGTTAGTTTACAACAAATTGGC ACCCGTTTTTCTGTTTTTATATCAATGGATGGATTTCTCATGTTCATGTCTACTTCCAAGCCACTTCAATCTTTTCCGCG TAATTGTGTATAAGGTGTGTCTCTGCCTCTTATTATTTTCTAATTGAAGTATTAGCTTCGTCCTTTAATTTCATTATTTT TATTGATCTCTCTGTTTTTTATCTATTAGATTCACACCAATGGGAAGCCAAATACATATTCTTATGGAAGGAAAGCAACC ATAAGGGAGTTCTATGGTAAGTACTAGAAACCTTGCTTCCGCCTACAATCTGCTATGTTATTGTACAGAAGGCTATTTTG ATGCCTCAGAGCTTTTAATATAATTCTATTCAACTTTATTCCCCTGCTTGACATAGCTGGTGATTTAAATTCTTCAAATA TTATATTGATCAAAGGTGGCAATTTGGATTTTTTTTTTGTAATCAAGGAGTAAGTTCATCTAATAGAGTTGTACTGTTTT TGCACTTAACTAGCCCGGATTCATTAATCTACAATTGATTTGCAGGTGTTATATTACCTTCTCTTCAGCGTCTTCACGAT GATTTAGTAGATACTAACATCATGAAAGAAAAAGATCGCAGCATCGAGGTGGTTATCGATAGGAGTGCGGATGATAGGAG GAAGCCTTTTGATTTGGACTCAGACAGAGAAAATGAGTGTGGTATCTGCTTAGAGTCTTGCACAAAAATGGTCTTACCTA ATTGCTGCCATGCTATGTGTAAAAATTGTTACAGTGACTGGTAAGATCATGCCCTCAGTTTTTCTTCTACTATCATGTAA AAACTAAAAACTAGTCATTGGTAATCTGAAAATGGAAGAACGGAGTTATCACTAACAGTTAAGAAATCTGTTTGTCACAT TATATTACAGGAACACAAGGTCAGAATCTTGTCCGTTTTGCCGGGGAAGTTTAAAGAGAGTTAACTCAGGTGATTTGTGG GTTCTAACAAGCAGTAGTGATGTGATTGATGCACAAACCGCGTACAGAGAAGATATTCTGTGCCTCTATCTCTTTGTAAA TAACCTGCCAGAACATATTCCTGATGCTCTTTTCTTTATGTATTATGAGTACTTATTTTAATTGAAGAATATGTACAGGA GAGAAAAATGACAGCCAACAGTGTACAGAATCCTGTCAATTTTCTTGATTATTTGTTTGTATATTACTCAGTGATAACAC TCTTGCATATAATATATCACTTATAGTGTTTATCAAGATATCATTAGAAAATGAGGTGACTGTTTGCTTTTAACAGAAAT GTCATATGTATAAACAACTTCCATCCTTGCATAGTCTTGGAGAGAATGGAGAAAATCCTCATTACCCTATACATATGTTA GGCTTCTAAATTATAGACTTATAGTCATAATATTATTAGTGGCATGGGCGTTTGGGTCTGGGTTGGATGTTGTCATTGGG TTCGGGTTTGGTTTTATCTATCTGTGTTAGTGTTAGTCCTGTTTGGCCGAGTCTGTTTTATCATTTGAGTTGTGCCTGTT TTGGGCCAGAGTTAATTGATTAGTAGGTTTAGATTAGTATATTTAAGAGTACTCTCATTGTTAACAAAAAAAAAAGCACT CTCATTATTAGCATTTGAGTATTGAGTTGTAAAAGGGTTTTACCCTTGGAATGGATTTTCCCTTGGAAGAAGGTTCGCCT TCTTGGGTTCGTTTTCAATAAATTCTAGTGTTATTTTAGAATTACTATTTTCCCCTATCCTTACTGTGTTTGGCTGTGAG GTTATTTTCTAACCTAACAACATGCAACACTACTCCTCATCTTTACCTCTATGTCTATCATATCAACCATTGGATTAATA TCCTTTCGTGCTAGCTCTCTCATGTTGAAATTTTGTGTCTATCTCTCTCTTCATACCTATTCAATAGGTTAGACCCTTTA AATATATATATGAAAGGATATCCTATATGAAGAGAGAAATAAACACAATTTTTTCTTGACATTGCCATGTGATATATATA TGCTCATCTCTTCATATGTATCACCTATTGTGCTAGGATAATTTCTCATAATAAAGCAAGACAATACACATTTTATCTTA TCTAATTATATGATGACGGTGGCGTGGCACCAACGATGTAAGCTTTCCTGCATGTACCCACCCATTGCCATTTGGGATAG GTAGTTGTGACTTTTGATGCTTAAGCTATTACTTACAATTGCTTGTTGAAAAACACATGCCATGTCTGAAGTATTGAATC ATGAGATGTTACTGTATCAGAGTGCGGTATTTAAATCATCGCACTTATTGCTTTATTAAGTATGATTGACACTTAACAAG AATGGCCGCACCTGTTTTGGCAACTGGCAGTTTATCTTCATAATGAGAGTGAAGAAGAGGGAGGATGTACCCATTTATTA GGACCACTGGCTCAGACTAGCATTGAATGTTTTCCAGTTTCTTTATTGGTGTGATTTACAGTTTGTGGTGCTCCTCTTGT CCTTTTTTTTTAGTTTTACTCCACAACAAGAAGCATGTGCTAATTAATGTTGATCACCTTCTGCAGACTGCAAAAACCAA GCAGACTGGGGACGAAATAAAATGGAATTCTGGAGTACTAAGTATGGCATGAATTCAATAGGTAGTTCTAGATGCTTCAT TGCTTAATTCCTCTCTTCAGATCCACCTTCCAAGAGGCAGAAGCAGATCCTCTGTCCCCTTTCCATGACTCATTTTTCTG ACCCATCAATGAGAGCTTGCCATAAAAGATGGGGTGGTTACAAATTTACATGTGTATCCTTTTTGCTAATATATTAAAAT TTCATTATTGTGACAGACAAATGAGACATAATTTGGGGATAAGAGATTTTAATCCCAAAAAGCTAACTTAATTAGGATGA AGTCAGGCGACCAAGTCTATCTTATGGTATGAGACTATCCCTCATTGTTGTAGCATGAGAGGAGACATGAATATATATTT TTTATACACCGAATCTTTCACCCAGAATCCTAAGACATTAGGTCATGTCACATTGTTG
CDS sequence (LotjaGi4g1v0224700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCGCTACCATATACTTGATTCAACCCCCACTTTCCAAGACTCCCTCAAGGCACTCGAGGCTGACATTCAACATGC CAATCTGCTGGCTGCTTCTATTTCAAGGGGCAATGGAAGTGCTTGCCTTCAAATGAAGTTAGTTTACAACAAATTGGCAC CCGTTTTTCTGTTTTTATATCAATGGATGGATTTCTCATGTTCATGTCTACTTCCAAGCCACTTCAATCTTTTCCGCGTA ATTGTGTATAAGATTCACACCAATGGGAAGCCAAATACATATTCTTATGGAAGGAAAGCAACCATAAGGGAGTTCTATGG TGTTATATTACCTTCTCTTCAGCGTCTTCACGATGATTTAGTAGATACTAACATCATGAAAGAAAAAGATCGCAGCATCG AGGTGGTTATCGATAGGAGTGCGGATGATAGGAGGAAGCCTTTTGATTTGGACTCAGACAGAGAAAATGAGTGTGGTATC TGCTTAGAGTCTTGCACAAAAATGGTCTTACCTAATTGCTGCCATGCTATGTGTAAAAATTGTTACAGTGACTGGAACAC AAGGTCAGAATCTTGTCCGTTTTGCCGGGGAAGTTTAAAGAGAGTTAACTCAGGTGATTTGTGGGTTCTAACAAGCAGTA GTGATGTGATTGATGCACAAACCGCGTACAGAGAAGATATTCTGTGCCTCTATCTCTTTACTGCAAAAACCAAGCAGACT GGGGACGAAATAAAATGGAATTCTGGAGTACTAAGTATGGCATGA
Protein sequence (LotjaGi4g1v0224700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRYHILDSTPTFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLLPSHFNLFRV IVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDRSIEVVIDRSADDRRKPFDLDSDRENECGI CLESCTKMVLPNCCHAMCKNCYSDWNTRSESCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFTAKTKQT GDEIKWNSGVLSMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 237 | 229 | 5.3E-110 | – | |
| PANTHER | 9 | 237 | 229 | 5.3E-110 | – | |
| Gene3D | 126 | 205 | 80 | 1.6E-12 | ||
| Pfam | 156 | 196 | 41 | 1.1E-7 | ||
| SUPERFAMILY | 157 | 201 | 45 | 1.3E-12 | – | |
| SMART | 158 | 195 | 38 | 1.6E-4 | ||
| ProSiteProfiles | 158 | 196 | 39 | 11.796 | ||
| ProSitePatterns | 173 | 182 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0224700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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