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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0224700 |
| Transcript ID | LotjaGi4g1v0224700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53049708..53053696) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATGAATAGGCCTCTCCCAACAAATTATTCTCCATACACATTGTTGAGGGATCGAACCCTTGACTAAATGTTTAAGG AGTCCAGCTATCTATAACTGTGTTGGACCTTGTTTGTTGTGTTTAGTGTATATTAAAAGTGGAACAAAGTATAACAGATA ACATGGGATAAGATAATACAAAAAAAGTAACACATTTTTGGTTCCACTAAAGAGAATATACCAGAAGACTGTCAAATGTT AGTGTGTATTTAAATCCTGTTTATAGGTCACCTTTACAATATGAATTTTCCAAATAGTAGGTTGTTTTAAACTTTTTATC CTTTTCCTCCTCTGCCATTTGCATTGCCCACTTTTTTTTATCCTCTAACAGATTAAGGATATATAATTTTCCTTTGTTAC TTGTTTGAAACATGTACCTAGCCTCAGTTAAAGTAATTCCTCCAAGATCAGATGATTCTACTATCTTTACTTCTAGTTGA GTGCTTGTCGTTATCTTTATAATTTCCCTTTCTTATGGTAAAGCCTAGGGACCAGTATCATGCCTCTTACTCATTTCTTA CACCAACAAGGAAGAATACTTCTGTAACCCTGTCACTCTATGATTGTTTATTTAATCCTTCCAAGTTAGTTTACTTGCAT ATAATGGTCCTTGGAATCAAAGGTATAGCCTGAGATTTGAGATGCATTTATTATTTCTTATGATGGTAAAAATGCATTGT TTCAGATATAATATATTGGTTCAAATTCGAAACTGTATGCAGGGCTGCTTCTATTTCAAGGGGCAATGGAAGTGCTTGCC TTCAAATGAAGTTAGTTTACAACAAATTGGCACCCGTTTTTCTGTTTTTATATCAATGGATGGATTTCTCATGTTCATGT CTACTTCCAAGCCACTTCAATCTTTTCCGCGTAATTGTGTATAAGGTGTGTCTCTGCCTCTTATTATTTTCTAATTGAAG TATTAGCTTCGTCCTTTAATTTCATTATTTTTATTGATCTCTCTGTTTTTTATCTATTAGATTCACACCAATGGGAAGCC AAATACATATTCTTATGGAAGGAAAGCAACCATAAGGGAGTTCTATGGTAAGTACTAGAAACCTTGCTTCCGCCTACAAT CTGCTATGTTATTGTACAGAAGGCTATTTTGATGCCTCAGAGCTTTTAATATAATTCTATTCAACTTTATTCCCCTGCTT GACATAGCTGGTGATTTAAATTCTTCAAATATTATATTGATCAAAGGTGGCAATTTGGATTTTTTTTTTGTAATCAAGGA GTAAGTTCATCTAATAGAGTTGTACTGTTTTTGCACTTAACTAGCCCGGATTCATTAATCTACAATTGATTTGCAGGTGT TATATTACCTTCTCTTCAGCGTCTTCACGATGATTTAGTAGATACTAACATCATGAAAGAAAAAGATCGCAGCATCGAGG TGGTTATCGATAGGAGTGCGGATGATAGGAGGAAGCCTTTTGATTTGGACTCAGACAGAGAAAATGAGTGTGGTATCTGC TTAGAGTCTTGCACAAAAATGGTCTTACCTAATTGCTGCCATGCTATGTGTAAAAATTGTTACAGTGACTGGTAAGATCA TGCCCTCAGTTTTTCTTCTACTATCATGTAAAAACTAAAAACTAGTCATTGGTAATCTGAAAATGGAAGAACGGAGTTAT CACTAACAGTTAAGAAATCTGTTTGTCACATTATATTACAGGAACACAAGGTCAGAATCTTGTCCGTTTTGCCGGGGAAG TTTAAAGAGAGTTAACTCAGGTGATTTGTGGGTTCTAACAAGCAGTAGTGATGTGATTGATGCACAAACCGCGTACAGAG AAGATATTCTGTGCCTCTATCTCTTTGTAAATAACCTGCCAGAACATATTCCTGATGCTCTTTTCTTTATGTATTATGAG TACTTATTTTAATTGAAGAATATGTACAGGAGAGAAAAATGACAGCCAACAGTGTACAGAATCCTGTCAATTTTCTTGAT TATTTGTTTGTATATTACTCAGTGATAACACTCTTGCATATAATATATCACTTATAGTGTTTATCAAGATATCATTAGAA AATGAGGTGACTGTTTGCTTTTAACAGAAATGTCATATGTATAAACAACTTCCATCCTTGCATAGTCTTGGAGAGAATGG AGAAAATCCTCATTACCCTATACATATGTTAGGCTTCTAAATTATAGACTTATAGTCATAATATTATTAGTGGCATGGGC GTTTGGGTCTGGGTTGGATGTTGTCATTGGGTTCGGGTTTGGTTTTATCTATCTGTGTTAGTGTTAGTCCTGTTTGGCCG AGTCTGTTTTATCATTTGAGTTGTGCCTGTTTTGGGCCAGAGTTAATTGATTAGTAGGTTTAGATTAGTATATTTAAGAG TACTCTCATTGTTAACAAAAAAAAAAGCACTCTCATTATTAGCATTTGAGTATTGAGTTGTAAAAGGGTTTTACCCTTGG AATGGATTTTCCCTTGGAAGAAGGTTCGCCTTCTTGGGTTCGTTTTCAATAAATTCTAGTGTTATTTTAGAATTACTATT TTCCCCTATCCTTACTGTGTTTGGCTGTGAGGTTATTTTCTAACCTAACAACATGCAACACTACTCCTCATCTTTACCTC TATGTCTATCATATCAACCATTGGATTAATATCCTTTCGTGCTAGCTCTCTCATGTTGAAATTTTGTGTCTATCTCTCTC TTCATACCTATTCAATAGGTTAGACCCTTTAAATATATATATGAAAGGATATCCTATATGAAGAGAGAAATAAACACAAT TTTTTCTTGACATTGCCATGTGATATATATATGCTCATCTCTTCATATGTATCACCTATTGTGCTAGGATAATTTCTCAT AATAAAGCAAGACAATACACATTTTATCTTATCTAATTATATGATGACGGTGGCGTGGCACCAACGATGTAAGCTTTCCT GCATGTACCCACCCATTGCCATTTGGGATAGGTAGTTGTGACTTTTGATGCTTAAGCTATTACTTACAATTGCTTGTTGA AAAACACATGCCATGTCTGAAGTATTGAATCATGAGATGTTACTGTATCAGAGTGCGGTATTTAAATCATCGCACTTATT GCTTTATTAAGTATGATTGACACTTAACAAGAATGGCCGCACCTGTTTTGGCAACTGGCAGTTTATCTTCATAATGAGAG TGAAGAAGAGGGAGGATGTACCCATTTATTAGGACCACTGGCTCAGACTAGCATTGAATGTTTTCCAGTTTCTTTATTGG TGTGATTTACAGTTTGTGGTGCTCCTCTTGTCCTTTTTTTTTAGTTTTACTCCACAACAAGAAGCATGTGCTAATTAATG TTGATCACCTTCTGCAGACTGCAAAAACCAAGCAGACTGGGGACGAAATAAAATGGAATTCTGGAGTACTAAGTATGGCA TGAATTCAATAGGTAGTTCTAGATGCTTCATTGCTTAATTCCTCTCTTCAGATCCACCTTCCAAGAGGCAGAAGCAGATC CTCTGTCCCCTTTCCATGACTCATTTTTCTGACCCATCAATGAGAGCTTGCCATAAAAGATGGGGTGGTTACAAATTTAC ATGTGTATCCTTTTTGCTAATATATTAAAATTTCATTATTGTGACAGACAAATGAGACATAATTTGGGGATAAGAGATTT TAATCCCAAAAAGCTAACTTAATTAGGATGAAGTCAGGCGACCAAGTCTATCTTATGGTATGAGACTATCCCTCATTGTT GTAGCATGAGAGGAGACATGAATATATATTTTTTATACACCGAATCTTTCACCCAGAATCCTAAGACATTAGGTCATGTC ACATTGTTGTTCAACACTTACTTTTTCATCCAATGTGTGATGACTTCTTTATATACTTTTTTAATTTCTTACTCACTTAA AGTCTCAAGTGCGTAGCTGTATACACGGCGGAAAATAATAGTGAGGTTAAAATTATGGGAGACAGTCAC
CDS sequence (LotjaGi4g1v0224700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTAGTTTACAACAAATTGGCACCCGTTTTTCTGTTTTTATATCAATGGATGGATTTCTCATGTTCATGTCTACT TCCAAGCCACTTCAATCTTTTCCGCGTAATTGTGTATAAGATTCACACCAATGGGAAGCCAAATACATATTCTTATGGAA GGAAAGCAACCATAAGGGAGTTCTATGGTGTTATATTACCTTCTCTTCAGCGTCTTCACGATGATTTAGTAGATACTAAC ATCATGAAAGAAAAAGATCGCAGCATCGAGGTGGTTATCGATAGGAGTGCGGATGATAGGAGGAAGCCTTTTGATTTGGA CTCAGACAGAGAAAATGAGTGTGGTATCTGCTTAGAGTCTTGCACAAAAATGGTCTTACCTAATTGCTGCCATGCTATGT GTAAAAATTGTTACAGTGACTGGAACACAAGGTCAGAATCTTGTCCGTTTTGCCGGGGAAGTTTAAAGAGAGTTAACTCA GGTGATTTGTGGGTTCTAACAAGCAGTAGTGATGTGATTGATGCACAAACCGCGTACAGAGAAGATATTCTGTGCCTCTA TCTCTTTACTGCAAAAACCAAGCAGACTGGGGACGAAATAAAATGGAATTCTGGAGTACTAAGTATGGCATGA
Protein sequence (LotjaGi4g1v0224700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLVYNKLAPVFLFLYQWMDFSCSCLLPSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTN IMKEKDRSIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSESCPFCRGSLKRVNS GDLWVLTSSSDVIDAQTAYREDILCLYLFTAKTKQTGDEIKWNSGVLSMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 8.6E-93 | – | |
| PANTHER | 1 | 193 | 193 | 8.6E-93 | – | |
| Gene3D | 82 | 161 | 80 | 1.1E-12 | ||
| Pfam | 112 | 152 | 41 | 8.5E-8 | ||
| SUPERFAMILY | 113 | 157 | 45 | 8.25E-13 | – | |
| ProSiteProfiles | 114 | 152 | 39 | 11.796 | ||
| SMART | 114 | 151 | 38 | 1.6E-4 | ||
| ProSitePatterns | 129 | 138 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0224700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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