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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225600 |
| Transcript ID | LotjaGi4g1v0225600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53141350..53143966) extracted from Lotus japonicus Gifu genome v1.2.
TGATGTTAGTTATTAAAATTGACTCGGATGTAATGTGTAACAGTATTATACTTTGTAATAAAACTACTAAACAATGATTG TCCTCCTGCTCCTGCATGTGCCCTTTTTTCTTCCCTTGACTGTTTGGAACTTCCACCATGATTTGGGGCTTGCTTAACGG ACAAAACTACCCAACTGGTATCCCGTAAAACCTGAAATCACGAAGCACATTGGTCCTACATGTTCAGTTCAATCACGCCA TTTAGCCCGCCCTCACTCCCTTTATATACACCCCCACCCTACCTACATTCTCCTCACCACTCATCCCCATTCCCCTTCTC CTTCTTTCTCTCTCCCAACTCAATTTGCCAAAAATGCCAACCTCCACTTCACTCTCTTCCCTCCTCTTCCTCTTCTCTCT CCTCACCCCAACCCTCATTTCCTCTTCCCATCTTCAGGACCCTGAATTGGTTGTCCAAGAAGTAAATAGGTACTAATTCA TTAAAGCCACACACACTTTGTACTTCATTCCATTTCTCCTCCACACATGAAATGTTTTGTACATTATACCAAATGTTTCA GTACATTGCACGGGTTTACATCTAGTTATAACAAAATTTATGTTTTCATATAATTTTCTTATCTATGTTTTTATTTGAAA TTTGGACAGTAAAATCAATGCCTCAGTGGCTAGGAGGAATTTGGGCTACCTATCATGTGGGAGTGGAAACCCCATTGATG ATTGCTGGAGGTGTGACCCAAACTGGGAGAAGAACAGGCAGAGGCTAGCAGACTGTGCAATTGGCTTCGGCAAGAACGCC ATTGGTGGAAGGAACGGTAAGATATACGTGGTCACCGACTCCGGCGACGACAACGCCGTCACTCCGAAGCCAGGGACATT GCGGTACGCGGTGATCCAGGATGAGCCACTATGGATCATCTTCGCCAGAGACATGGTGATTCAGCTGAAGGAGGAGCTGA TCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGCTGGTGGGCCCTGCATCACGGTTCAGTAT GTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAGGGAATGCTATGGTGAGGGACTCCCCAAA GCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGTGGGAGCCATGTCTGGGTGGACCATTGCT CTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGCGATTACCATCTCTAACAATTACATGACG CACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACAAGAACATGCAGGTCACCATTGCTTTTAA CCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTAAAGTAAATTTCATTCATTCATTAATGCTAACCCGACAAATT GGATACACAGTGAAAAAACACAATAATACATAATTACAGTGTGCAGGGACAACTTCTCTTAATTCTTATGGCTGTCGACT GAGAAAATTTTAATTTTGCAATGATTTTTTATCATGTATTTAGTTAATTACCATTCCACTCAGATTTCAAATTGAGGTGC CCAAAACAAGAAAGGGAAAAAAGGGTAAGAGGAGGGTGGGTTGTCACTTGTCAACATGAAAAGCATAGATAAAAATTTAT TAATTTTTATGGAAGTGACTGTGTTAATTTTGTCAACATTTCTAATTATTAACTAAAACTATGTGGGGTCAGTGAATTCT GAAATTGGAGGAAATTTTGTGATTTGCATGTGCAGGTGCAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCA CTGGGAAATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCTAATGACA GATTCAGCAAAGAGGTAAGCATTAATTACAGAATCATTCTTAAAGTTTAATTCAATCATTTTTCTTAATTAGTTAATAGT TATGAAAATTGTTTAATTATATGGTTTGAATTTAATTTACATAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGG AAGGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAGCCTCTGG TAGCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGTGCACTCA ACTGTAGAAAAGGTTCTCATTGCTAGCTATAGATTATTAATTATGACCCCTCGAGCAAATGACTCTGCAGGCTGGTCTAT ATTAGTTCCAAGAAAGGTGTGAAAGAAAATATATGTAATTGAAGAAATTGGAAGGACCCCATAGTCTATAGACTATGGTC ATTTTCTTAACATTGTTTTCTACGTTTTGTCCTTTTTTTTAAAACTTTTGCTTGGGTGTTCAGATTTGTTCTGCTTTTTA CCATGATTACTTACAACCTCTGTCTGTTAAAATCTTGGAACCAAATCTGAGAATCTGGTCAAAGAGAAAGCATGCTAGTT CAAGAGTTGATATATGTGTAAAATTTGCAAATTTCAATGCAGAACCTTCTTTCTTTC
CDS sequence (LotjaGi4g1v0225600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAACCTCCACTTCACTCTCTTCCCTCCTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCATCT TCAGGACCCTGAATTGGTTGTCCAAGAAGTAAATAGTAAAATCAATGCCTCAGTGGCTAGGAGGAATTTGGGCTACCTAT CATGTGGGAGTGGAAACCCCATTGATGATTGCTGGAGGTGTGACCCAAACTGGGAGAAGAACAGGCAGAGGCTAGCAGAC TGTGCAATTGGCTTCGGCAAGAACGCCATTGGTGGAAGGAACGGTAAGATATACGTGGTCACCGACTCCGGCGACGACAA CGCCGTCACTCCGAAGCCAGGGACATTGCGGTACGCGGTGATCCAGGATGAGCCACTATGGATCATCTTCGCCAGAGACA TGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGAGCGAGTGTGCACATCGCT GGTGGGCCCTGCATCACGGTTCAGTATGTGACCAACATCATCATCCATGGGATACACATACATGATTGCAAGCAGGGAGG GAATGCTATGGTGAGGGACTCCCCAAAGCACTTTGGGTGGAGGACTGTATCGGACGGTGATGGTGTGTCCATCTTTGGTG GGAGCCATGTCTGGGTGGACCATTGCTCTTTGTCTAACTGTAATGATGGGTTGATCGACGCCATCCATGGTTCCACGGCG ATTACCATCTCTAACAATTACATGACGCACCATGATAAGGTCATGCTGCTGGGCCACAGCGATAGTTACACCCAAGACAA GAACATGCAGGTCACCATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGCAGGCATGGATATT TTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAA GGCAATAGGTTTGTTGCACCTAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAGTGGAA GGGGTGGAATTGGAGATCAGAAGGGGATTTGTTGTTAAACGGTGCGTTTTTCACAGCAACTGGAGCTGGAGCCTCTGGTA GCTATGCAAGAGCTTCAAGCCTGAGTGCAAGACCATCAACCCTAGTGGGTACTATAACCACTGGTGCTGGTGCACTCAAC TGTAGAAAAGGTTCTCATTGCTAG
Protein sequence (LotjaGi4g1v0225600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTSTSLSSLLFLFSLLTPTLISSSHLQDPELVVQEVNSKINASVARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLAD CAIGFGKNAIGGRNGKIYVVTDSGDDNAVTPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIA GGPCITVQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA ITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFVAPNDRFSKEVTKHEDAPESEWKGWNWRSEGDLLLNGAFFTATGAGASGSYARASSLSARPSTLVGTITTGAGALN CRKGSHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 7 | 407 | 401 | 4.6E-254 | – | |
| PANTHER | 7 | 407 | 401 | 4.6E-254 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 407 | 383 | - | – | |
| SUPERFAMILY | 38 | 402 | 365 | 2.51E-106 | ||
| Gene3D | 58 | 400 | 343 | 1.5E-125 | ||
| PRINTS | 81 | 98 | 18 | 1.3E-84 | ||
| PRINTS | 105 | 130 | 26 | 1.3E-84 | ||
| SMART | 133 | 330 | 198 | 5.3E-107 | ||
| PRINTS | 141 | 157 | 17 | 1.3E-84 | ||
| Pfam | 143 | 324 | 182 | 1.2E-20 | ||
| PRINTS | 205 | 226 | 22 | 1.3E-84 | ||
| PRINTS | 285 | 304 | 20 | 1.3E-84 | ||
| PRINTS | 307 | 326 | 20 | 1.3E-84 | ||
| PRINTS | 349 | 373 | 25 | 1.3E-84 | ||
| PRINTS | 378 | 401 | 24 | 1.3E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0225600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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